Homologs of GFF5774 from Variovorax sp. SCN45

RNA polymerase sigma factor for flagellar operon
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF5774 RNA polymerase sigma factor for flagellar operon insig. 100 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS28940 RNA polymerase sigma factor FliA strong 58 99
o Paraburkholderia graminis OAS925 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA strong 57 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 57 100
o Burkholderia phytofirmans PsJN BPHYT_RS18925 RNA polymerase sigma70 strong 56 100
o Cupriavidus basilensis FW507-4G11 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor insig. 57 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS17485 RNA polymerase sigma factor FliA insig. 59 99
o Ralstonia solanacearum UW163 UW163_RS21665 RNA polymerase sigma factor FliA insig. 59 99
o Herbaspirillum seropedicae SmR1 HSERO_RS10160 flagellar biosynthesis sigma factor strong 56 99
o Ralstonia solanacearum GMI1000 RS_RS23830 RNA polymerase sigma factor FliA insig. 57 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS18040 RNA polymerase sigma factor FliA strong 57 99
o Ralstonia solanacearum PSI07 RPSI07_RS06165 RNA polymerase sigma factor FliA insig. 58 99
o Methylophilus sp. DMC18 GFF1338 RNA polymerase sigma factor FliA cofit 54 99
o Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 53 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1428 RNA polymerase sigma factor for flagellar operon insig. 52 99
o Dechlorosoma suillum PS Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family cofit 52 98
o Rahnella sp. WP5 EX31_RS09450 RNA polymerase sigma factor FliA cofit 48 99
o Dickeya dadantii 3937 DDA3937_RS13300 RNA polymerase sigma factor FliA strong 48 98
o Dickeya dianthicola 67-19 HGI48_RS13350 RNA polymerase sigma factor FliA cofit 48 98
o Dickeya dianthicola ME23 DZA65_RS13835 RNA polymerase sigma factor FliA strong 48 98
o Pectobacterium carotovorum WPP14 HER17_RS08355 RNA polymerase sigma factor FliA cofit 48 99
o Castellaniella sp019104865 MT123 ABCV34_RS05605 RNA polymerase sigma factor FliA sig. 52 95
o Escherichia coli Nissle 1917 ECOLIN_RS10975 RNA polymerase sigma factor FliA insig. 48 100
o Escherichia coli BW25113 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) sig. 48 100
o Escherichia coli ECOR27 NOLOHH_16400 fliA RNA polymerase sigma factor FliA cofit 48 100
o Escherichia coli ECOR38 HEPCGN_04135 fliA RNA polymerase sigma factor FliA insig. 48 100
o Escherichia coli ECRC100 OKFHMN_25780 fliA RNA polymerase sigma factor FliA cofit 48 100
o Escherichia coli ECRC101 MCAODC_19610 fliA RNA polymerase sigma factor FliA insig. 48 100
o Escherichia coli ECRC102 NIAGMN_02270 fliA RNA polymerase sigma factor FliA insig. 48 100
o Escherichia coli ECRC62 BNILDI_15190 fliA RNA polymerase sigma factor FliA cofit 48 100
o Escherichia coli ECRC98 JDDGAC_00370 fliA RNA polymerase sigma factor FliA insig. 48 100
o Escherichia coli ECRC99 KEDOAH_02310 fliA RNA polymerase sigma factor FliA no data 48 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01807 RNA polymerase sigma factor FliA insig. 48 100
o Escherichia fergusonii Becca EFB2_02023 RNA polymerase sigma factor FliA insig. 48 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_21960 fliA RNA polymerase sigma factor FliA cofit 47 98
o Erwinia tracheiphila SCR3 LU632_RS13785 RNA polymerase sigma factor FliA insig. 47 98
o Pantoea sp. MT58 IAI47_08160 RNA polymerase sigma factor FliA cofit 47 98
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS02055 RNA polymerase sigma factor FliA cofit 47 98
o Erwinia amylovora T8 OLJFJH_12555 RNA polymerase sigma factor FliA sig. 47 98
o Enterobacter asburiae PDN3 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family cofit 48 100
o Enterobacter sp. TBS_079 MPMX20_02847 RNA polymerase sigma factor FliA strong 48 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1690 RNA polymerase sigma factor for flagellar operon strong 47 100
o Serratia liquefaciens MT49 IAI46_15785 RNA polymerase sigma factor FliA cofit 46 99
o Marinobacter adhaerens HP15 HP15_2302 flagellar biosynthesis sigma factor FliA strong 46 99
o Alteromonas macleodii MIT1002 MIT1002_01103 Sigma-F factor sig. 45 97
o Shewanella amazonensis SB2B Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) strong 47 95
o Shewanella loihica PV-4 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) strong 47 95
o Shewanella oneidensis MR-1 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) strong 48 95
o Pseudomonas aeruginosa MRSN321 DY961_RS05635 fliA;inference=COORDINATES RNA polymerase sigma factor FliA strong 44 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS47155 fliA;inference=COORDINATES RNA polymerase sigma factor FliA strong 44 98
o Pseudomonas sp. S08-1 OH686_02730 RNA polymerase sigma factor for flagellar operon cofit 46 97
o Pseudomonas aeruginosa PA14 IKLFDK_06920 flagellar biosynthesis sigma factor FliA strong 44 98
o Lysobacter sp. OAE881 ABIE51_RS16865 RNA polymerase sigma factor FliA strong 45 98
o Shewanella sp. ANA-3 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) strong 47 95
o Pseudomonas segetis P6 ACVTMO_RS15490 fliA RNA polymerase sigma factor FliA strong 45 97
o Pseudomonas stutzeri RCH2 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family strong 44 97
o Pseudomonas syringae pv. syringae B728a Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 43 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG cofit 43 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS20265 RNA polymerase sigma factor FliA insig. 43 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_10335 RNA polymerase sigma factor FliA cofit 44 98
o Rhodanobacter sp. FW510-T8 OKGIIK_02830 fliA RNA polymerase sigma factor FliA cofit 45 93
o Pseudomonas fluorescens FW300-N2C3 AO356_03730 flagellar biosynthesis sigma factor strong 44 93
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon strong 44 93
o Rhodanobacter denitrificans MT42 LRK55_RS13320 RNA polymerase sigma factor FliA cofit 44 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13580 RNA polymerase sigma factor FliA strong 44 93
o Pseudomonas simiae WCS417 PS417_19695 flagellar biosynthesis sigma factor strong 44 95
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS14995 RNA polymerase sigma factor FliA insig. 44 94
o Pseudomonas fluorescens SBW25 PFLU_RS21660 RNA polymerase sigma factor FliA cofit 43 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21660 RNA polymerase sigma factor FliA strong 43 98
o Pseudomonas putida KT2440 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons strong 42 98
o Pseudomonas sp. DMC3 GFF2472 RNA polymerase sigma factor FliA cofit 44 93
o Pseudomonas sp. RS175 PFR28_00852 RNA polymerase sigma factor FliA strong 44 93
o Pseudomonas orientalis W4I3 QF045_RS21835 RNA polymerase sigma factor FliA insig. 42 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon insig. 44 93
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04138 RNA polymerase sigma factor FliA cofit 42 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon insig. 44 93
o Pseudomonas fluorescens FW300-N2E3 AO353_18785 flagellar biosynthesis sigma factor strong 44 93
o Pseudomonas sp. SVBP6 COO64_RS25625 fliA RNA polymerase sigma factor FliA cofit 42 98
o Pseudomonas sp. BP01 JOY50_RS00585 fliA RNA polymerase sigma factor FliA cofit 42 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon cofit 47 94
  Erwinia amylovora T8 OLJFJH_10105 RNA polymerase sigma factor FliA insig. 38 100
o Desulfovibrio vulgaris Miyazaki F DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) strong 36 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) strong 34 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4065 RNA polymerase sigma factor for flagellar operon insig. 35 95
o Sphingobium sp. HT1-2 GFF3722 RNA polymerase sigma factor for flagellar operon cofit 33 93
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family cofit 33 93
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_14635 RNA polymerase sigma factor FliA no data 34 91
  Erwinia tracheiphila SCR3 LU632_RS20475 FliA/WhiG family RNA polymerase sigma factor no data 34 91
  Pseudomonas stutzeri RCH2 Psest_4160 RNA polymerase sigma factor, FliA/WhiG family insig. 36 91
  Cellulophaga baltica 18 M666_RS16155 RNA polymerase sigma factor RpoD/SigA insig. 29 83
  Escherichia coli Nissle 1917 ECOLIN_RS10960 sigma-70 family RNA polymerase sigma factor no data 64 24
  Mycobacterium tuberculosis H37Rv Rv3286c Alternative RNA polymerase sigma factor SigF insig. 30 83
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 30 82
  Synechococcus elongatus PCC 7942 Synpcc7942_0569 rpoD4 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like strong 31 83
  Cellulophaga baltica 18 M666_RS16995 RNA polymerase sigma factor RpoD/SigA insig. 29 82
  Synechococcus elongatus PCC 7942 Synpcc7942_0649 rpoD1 RNA polymerase sigma factor RpoD no data 26 93
  Synechococcus elongatus PCC 7942 Synpcc7942_1557 rpoD6 principal RNA polymerase sigma factor SigA strong 30 83
  Cellulophaga baltica 18 M666_RS08520 sigma-70 family RNA polymerase sigma factor strong 29 82
  Synechocystis sp000284455 PCC 6803 SGL_RS17245 RNA polymerase sigma factor RpoD no data 26 93
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 25 81