Homologs of GFF3948 from Xanthobacter sp. DMC5

Ribosomal silencing factor RsfS
SEED: Ribosomal silencing factor RsfA (former Iojap)
KEGG: ribosome-associated protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF3948 Ribosomal silencing factor RsfS insig. 100 100
o Rhodopseudomonas palustris CGA009 TX73_000865 ribosome silencing factor insig. 55 98
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14820 ribosome silencing factor cofit 65 78
  Caulobacter crescentus NA1000 CCNA_03545 iojap protein family no data 64 80
  Caulobacter crescentus NA1000 Δfur CCNA_03545 iojap protein family no data 64 80
o Azospirillum brasilense Sp245 AZOBR_RS04065 ribosome-associated protein IOJAP insig. 62 84
o Bosea sp. OAE506 ABIE41_RS07570 ribosome silencing factor insig. 62 85
  Agrobacterium fabrum C58 Atu2777 hypothetical protein strong 62 88
o Magnetospirillum magneticum AMB-1 AMB_RS23800 ribosome silencing factor insig. 61 80
  Rhodospirillum rubrum S1H Rru_A1236 Iojap-related protein (NCBI) insig. 63 83
  Rhizobium sp. OAE497 ABIE40_RS18960 ribosome silencing factor insig. 63 79
o Sphingobium sp. HT1-2 GFF750 Ribosomal silencing factor RsfA cofit 61 84
  Sinorhizobium meliloti 1021 SMc03780 hypothetical protein sig. 56 93
o Phaeobacter inhibens DSM 17395 PGA1_c29760 iojap-like ribosome-associated protein sig. 56 92
o Dinoroseobacter shibae DFL-12 Dshi_0087 iojap-like protein (RefSeq) insig. 60 85
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2504 ribosome silencing factor RsfS/YbeB/iojap strong 54 93
  Azospirillum sp. SherDot2 MPMX19_01941 Ribosomal silencing factor RsfS insig. 65 67
o Pseudomonas stutzeri RCH2 Psest_0510 iojap-like ribosome-associated protein sig. 46 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1358 Iojap protein no data 43 98
  Pectobacterium carotovorum WPP14 HER17_RS15235 ribosome silencing factor insig. 48 77
o Pseudomonas sp. S08-1 OH686_09330 ribosome silencing factor insig. 45 88
  Pseudomonas fluorescens FW300-N2C3 AO356_15300 ribosome silencing factor no data 47 88
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4995 Iojap protein no data 47 88
  Pantoea sp. MT58 IAI47_14015 ribosome silencing factor sig. 49 77
  Pseudomonas putida KT2440 PP_4809 Ribosomal silencing factor RsfS no data 47 88
  Pseudomonas fluorescens FW300-N2E3 AO353_06485 ribosome silencing factor no data 44 99
o Pseudomonas segetis P6 ACVTMO_RS05205 rsfS ribosome silencing factor insig. 43 89
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03290 ribosome silencing factor cofit 48 77
o Pseudomonas syringae pv. syringae B728a Psyr_4367 Iojap-related protein insig. 45 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4367 Iojap-related protein insig. 45 88
  Erwinia amylovora T8 OLJFJH_17215 ribosome silencing factor insig. 48 77
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09060 ribosome silencing factor no data 53 75
o Dickeya dianthicola ME23 DZA65_RS06570 ribosome silencing factor insig. 46 90
  Pseudomonas fluorescens SBW25 PFLU_RS26665 ribosome silencing factor no data 45 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26665 ribosome silencing factor no data 45 88
  Pseudomonas simiae WCS417 PS417_24735 ribosome-associated protein IOJAP no data 45 88
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2690 Iojap protein no data 44 88
  Dickeya dianthicola 67-19 HGI48_RS06225 ribosome silencing factor insig. 48 77
o Shewanella sp. ANA-3 Shewana3_0997 iojap-like protein (RefSeq) no data 46 85
  Pseudomonas sp. SVBP6 COO64_RS15620 rsfS ribosome silencing factor sig. 44 89
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4550 Iojap protein insig. 46 77
o Shewanella oneidensis MR-1 SO1170 iojap domain protein (NCBI ptt file) sig. 46 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05100 Ribosomal silencing factor RsfS no data 44 88
  Pseudomonas orientalis W4I3 QF045_RS27020 ribosome silencing factor cofit 44 88
o Kangiella aquimarina DSM 16071 B158DRAFT_0086 iojap-like ribosome-associated protein strong 42 84
  Klebsiella michiganensis M5al BWI76_RS08045 ribosome silencing factor RsfS no data 48 77
  Enterobacter asburiae PDN3 EX28DRAFT_2326 ribosome silencing factor RsfS/YbeB/iojap insig. 47 77
  Enterobacter sp. TBS_079 MPMX20_01296 Ribosomal silencing factor RsfS insig. 47 77
o Alteromonas macleodii MIT1002 MIT1002_01853 Ribosomal silencing factor RsfS insig. 43 86
  Dickeya dadantii 3937 DDA3937_RS06180 ribosome silencing factor insig. 47 77
  Klebsiella pneumoniae MKP103 KDGMDA_16405 ribosome silencing factor strong 47 77
  Rhodanobacter denitrificans MT42 LRK55_RS02455 ribosome silencing factor insig. 52 75
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02700 ribosome silencing factor sig. 52 75
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_02455 rsfS ribosome silencing factor cofit 46 77
  Erwinia tracheiphila SCR3 LU632_RS16365 rsfS ribosome silencing factor insig. 46 77
  Escherichia coli BL21 ECD_00606 ribosomal silencing factor cofit 45 77
  Escherichia fergusonii Becca EFB2_03455 Ribosomal silencing factor RsfS insig. 45 77
  Escherichia coli ECOR27 NOLOHH_23730 rsfS ribosome silencing factor strong 45 77
  Escherichia coli ECOR38 HEPCGN_00920 rsfS ribosome silencing factor sig. 45 77
  Escherichia coli ECRC100 OKFHMN_07355 rsfS ribosome silencing factor cofit 45 77
  Escherichia coli ECRC101 MCAODC_26570 rsfS ribosome silencing factor sig. 45 77
  Escherichia coli ECRC102 NIAGMN_05410 rsfS ribosome silencing factor insig. 45 77
  Escherichia coli ECRC62 BNILDI_21740 rsfS ribosome silencing factor cofit 45 77
  Escherichia coli ECRC98 JDDGAC_11000 rsfS ribosome silencing factor insig. 45 77
  Escherichia coli ECRC99 KEDOAH_20615 rsfS ribosome silencing factor no data 45 77
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03069 Ribosomal silencing factor RsfS insig. 45 77
  Escherichia coli Nissle 1917 ECOLIN_RS03470 ribosome silencing factor no data 45 77
  Escherichia coli BW25113 b0637 ybeB orf, hypothetical protein (VIMSS) no data 45 77
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS07245 ribosome silencing factor insig. 52 75
  Rhodanobacter sp. FW510-T8 OKGIIK_09755 rsfS ribosome silencing factor sig. 52 75
  Rahnella sp. WP5 EX31_RS23130 ribosome silencing factor insig. 47 77
o Pseudomonas aeruginosa MRSN321 DY961_RS12830 rsfS;go_function=ribosome ribosome silencing factor sig. 45 80
o Pseudomonas aeruginosa PA14 IKLFDK_20655 ribosome silencing factor sig. 45 80
o Pseudomonas aeruginosa PUPa3 DQ20_RS48160 rsfS;go_function=ribosome ribosome silencing factor sig. 45 80
o Marinobacter adhaerens HP15 HP15_603 Iojap-related protein sig. 43 88
  Pseudomonas sp. BP01 JOY50_RS17690 rsfS ribosome silencing factor insig. 44 88
  Serratia liquefaciens MT49 IAI46_05940 ribosome silencing factor no data 44 77
o Shewanella loihica PV-4 Shew_2933 iojap-like protein (RefSeq) no data 42 88
  Pseudomonas sp. DMC3 GFF3878 Ribosomal silencing factor RsfS no data 43 88
  Pseudomonas sp. RS175 PFR28_03870 Ribosomal silencing factor RsfS no data 44 80
o Acinetobacter baumannii LAC-4 RR41_RS16120 ribosome silencing factor no data 41 90
o Shewanella amazonensis SB2B Sama_2586 iojap domain-containing protein (RefSeq) sig. 42 84
  Acinetobacter radioresistens SK82 MPMX26_00531 Ribosomal silencing factor RsfS strong 40 88
o Methylophilus sp. DMC18 GFF826 Ribosomal silencing factor RsfS cofit 44 82
o Dechlorosoma suillum PS Dsui_0452 iojap-like ribosome-associated protein insig. 43 83
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1874.1 Iojap protein insig. 44 91
  Castellaniella sp019104865 MT123 ABCV34_RS02535 ribosome silencing factor insig. 42 79
o Desulfovibrio vulgaris Hildenborough JW710 DVU1618 iojap-related protein (TIGR) no data 37 90
  Lysobacter sp. OAE881 ABIE51_RS06745 ribosome silencing factor insig. 46 83
  Vibrio cholerae E7946 ATCC 55056 CSW01_04870 ribosome silencing factor insig. 38 77
  Ralstonia solanacearum PSI07 RPSI07_RS13665 ribosome silencing factor insig. 41 79
  Ralstonia solanacearum GMI1000 RS_RS11010 ribosome silencing factor insig. 41 79
  Ralstonia sp. UNC404CL21Col ABZR87_RS15425 ribosome silencing factor sig. 41 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03560 ribosome silencing factor strong 41 79
  Ralstonia solanacearum UW163 UW163_RS10110 ribosome silencing factor insig. 41 79
  Cupriavidus basilensis FW507-4G11 RR42_RS04715 ribosome silencing factor RsfS insig. 42 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04518 ribosome-associated protein insig. 40 79
  Paraburkholderia graminis OAS925 ABIE53_001542 ribosome-associated protein sig. 39 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS24415 ribosome silencing factor insig. 41 83
  Burkholderia phytofirmans PsJN BPHYT_RS06390 ribosome-associated protein IOJAP sig. 39 79