Homologs of PS417_20155 from Pseudomonas simiae WCS417

23S rRNA methyltransferase
SEED: tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)
KEGG: RNA methyltransferase, TrmA family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 94 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 94 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 93 100
o Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 86 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 87 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 86 100
o Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 85 100
o Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 84 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 86 100
o Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 84 100
o Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 78 100
o Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 77 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 77 100
o Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 74 100
o Pseudomonas segetis P6 ACVTMO_RS08190 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 71 100
o Pseudomonas sp. BP01 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 75 100
o Pseudomonas aeruginosa MRSN321 DY961_RS07780 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 69 100
o Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 69 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS45015 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 69 100
o Pseudomonas putida KT2440 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 74 100
o Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 67 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 46 97
o Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 47 94
o Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 44 93
o Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 42 94
o Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 96
o Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 43 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 45 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 43 93
o Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 93
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 44 93
o Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 94
o Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 94
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 94
o Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 43 95
o Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 41 94
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 94
o Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 94
o Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 95
o Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 41 94
o Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 93
o Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 43 93
o Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 43 93
o Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 93
o Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 96
o Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 41 96
o Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 42 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 43 95
o Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 41 95
o Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 95
o Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 42 93
o Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 93
o Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 93
o Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 39 96
o Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 39 99
o Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 41 95
o Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 38 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 41 90
o Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 40 90
o Ralstonia sp. UNC404CL21Col ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 93
o Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Ralstonia solanacearum PSI07 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 93
o Variovorax sp. SCN45 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 38 93
o Herbaspirillum seropedicae SmR1 HSERO_RS14825 23S rRNA methyltransferase insig. 38 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Ralstonia solanacearum UW163 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Ralstonia solanacearum GMI1000 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 37 93
o Acidovorax sp. GW101-3H11 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 36 93
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 36 93
  Paraburkholderia graminis OAS925 ABIE53_002060 tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) sig. 42 64
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 30 93
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 93
o Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 30 94
o Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 30 95
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 94
o Magnetospirillum magneticum AMB-1 AMB_RS01660 class I SAM-dependent RNA methyltransferase insig. 34 93
o Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 94
o Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA cofit 29 94
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 27 94
o Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 90
o Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 28 92
o Xanthobacter sp. DMC5 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 93
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 94
o Fusobacterium nucleatum SB010 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 23 91
o Agrobacterium fabrum C58 Atu0735 RNA methyltransferase insig. 32 94