Homologs of PS417_20155 from Pseudomonas simiae WCS417

23S rRNA methyltransferase
SEED: tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35)
KEGG: RNA methyltransferase, TrmA family

246 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 94 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 94 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 93 100
o Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 86 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 87 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 86 100
o Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 85 100
o Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 84 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 86 100
o Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 84 100
o Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 78 100
o Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 77 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 77 100
o Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 74 100
o Pseudomonas segetis P6 ACVTMO_RS08190 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 71 100
o Pseudomonas sp. BP01 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 75 100
o Pseudomonas aeruginosa MRSN321 DY961_RS07780 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 69 100
o Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 69 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS45015 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 69 100
o Pseudomonas putida KT2440 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 74 100
o Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 67 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 46 97
o Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 47 94
o Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 44 93
o Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 42 94
o Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 96
o Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 43 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 45 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 43 93
o Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 93
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 44 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 44 93
o Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 94
o Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 94
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 94
o Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 43 95
o Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 41 94
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 94
o Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 94
o Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 42 95
o Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 41 94
o Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 93
o Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 43 93
o Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 43 93
o Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 43 93
o Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 96
o Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 41 96
o Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 42 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 43 95
o Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 41 95
o Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 95
o Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 42 93
o Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 96
o Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 40 93
o Klebsiella pneumoniae MRSN742743 KFA93_RS18420 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 93
o Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 41 93
o Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 39 96
o Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 43 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 39 99
o Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 41 95
o Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 38 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 41 90
o Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 40 90
o Ralstonia sp. UNC404CL21Col ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 93
o Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 98
o Ralstonia solanacearum PSI07 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 39 93
o Variovorax sp. SCN45 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 38 93
o Herbaspirillum seropedicae SmR1 HSERO_RS14825 23S rRNA methyltransferase insig. 38 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Ralstonia solanacearum UW163 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 37 97
o Ralstonia solanacearum GMI1000 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 37 93
o Acidovorax sp. GW101-3H11 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 36 93
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 36 93
  Paraburkholderia graminis OAS925 ABIE53_002060 tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) sig. 42 64
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 30 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 93
  Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 30 94
  Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 30 95
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 94
  Magnetospirillum magneticum AMB-1 AMB_RS01660 class I SAM-dependent RNA methyltransferase insig. 34 93
  Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA cofit 29 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 27 94
  Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 90
  Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 28 92
  Xanthobacter sp. DMC5 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 94
  Fusobacterium nucleatum SB010 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 23 91
  Agrobacterium fabrum C58 Atu0735 RNA methyltransferase insig. 32 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 92
  Bacteroides stercoris CC31F HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 28 94
  Rhizobium sp. OAE497 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase insig. 32 94
  Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 28 94
  Rhodopseudomonas palustris CGA009 TX73_004885 methyltransferase insig. 32 94
  Bosea sp. OAE506 ABIE41_RS22255 RNA methyltransferase insig. 31 93
  Azospirillum sp. SherDot2 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 97
  Bifidobacterium breve UCC2003 BBR_RS16615 class I SAM-dependent RNA methyltransferase strong 30 93
  Sinorhizobium meliloti 1021 SMc00974 RNA methyltransferase insig. 32 93
  Shewanella amazonensis SB2B Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 29 79
  Azospirillum brasilense Sp245 AZOBR_RS01195 RNA methyltransferase insig. 32 93
  Caulobacter crescentus NA1000 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein sig. 30 94
  Caulobacter crescentus NA1000 Δfur CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein cofit 30 94
  Dinoroseobacter shibae DFL-12 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) insig. 33 94
  Escherichia coli ECRC100 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 28 79
  Escherichia coli ECRC101 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli ECRC102 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 28 79
  Escherichia coli ECRC98 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli ECRC99 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC no data 28 79
  Escherichia coli BL21 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent insig. 28 79
  Escherichia coli ECRC62 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Phaeobacter inhibens DSM 17395 PGA1_c34810 putative RNA methyltransferase insig. 31 93
  Escherichia coli ECOR27 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli Nissle 1917 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli ECOR38 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia fergusonii Becca EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Escherichia coli BW25113 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) sig. 28 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 29 79
  Rhodospirillum rubrum S1H Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) no data 31 90
  Klebsiella michiganensis M5al BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase insig. 28 79
  Shewanella oneidensis MR-1 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) insig. 26 79
  Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 38 42
  Klebsiella pneumoniae MKP103 KDGMDA_17730 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Klebsiella pneumoniae MRSN742743 KFA93_RS01150 rlmC;go_function=rRNA 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 79
  Enterobacter asburiae PDN3 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB insig. 27 79
  Enterobacter sp. TBS_079 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 79
  Shewanella sp. ANA-3 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 27 79
  Pseudomonas fluorescens SBW25 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 28 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 28 76
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase insig. 30 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05030 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 29 75
  Pseudomonas sp. BP01 JOY50_RS27500 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 34 39
  Sphingobium sp. HT1-2 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 30 80
  Rahnella sp. WP5 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 79
  Dickeya dadantii 3937 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 80
  Dickeya dianthicola 67-19 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 80
  Pseudomonas orientalis W4I3 QF045_RS26680 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 28 76
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) insig. 28 79
  Pseudomonas aeruginosa PUPa3 DQ20_RS52695 trmA;go_function=tRNA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 29 76
  Pseudomonas sp. DMC3 GFF3938 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 28 76
  Pseudomonas putida KT2440 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase strong 34 39
  Pseudomonas segetis P6 ACVTMO_RS19815 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 34 39
  Pseudomonas aeruginosa MRSN321 DY961_RS09335 trmA;go_function=S-adenosylmethionine-dependent tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 29 76
  Pseudomonas aeruginosa PA14 IKLFDK_30015 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 29 76
  Pseudomonas syringae pv. syringae B728a Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 27 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 27 76
  Dickeya dianthicola ME23 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 80
  Pantoea sp. MT58 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 79
  Pseudomonas simiae WCS417 PS417_24385 tRNA (uracil-5-)-methyltransferase sig. 28 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS04310 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 27 79
  Pseudomonas stutzeri RCH2 Psest_3451 tRNA (uracil-5-)-methyltransferase sig. 34 38
  Pseudomonas sp. SVBP6 COO64_RS02860 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 28 76
  Pseudomonas fluorescens FW300-N2E3 AO353_13905 tRNA (uracil-5-)-methyltransferase sig. 30 61
  Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 36 41
  Erwinia tracheiphila SCR3 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) insig. 28 75
  Pseudomonas sp. S08-1 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase cofit 34 38
  Pseudomonas fluorescens FW300-N2C3 AO356_15600 tRNA (uracil-5-)-methyltransferase insig. 34 39
  Rahnella sp. WP5 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 27 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) strong 33 39
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 26 79
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) cofit 27 77
  Pseudomonas sp. RS175 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 33 39
  Alteromonas macleodii MIT1002 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase insig. 29 68
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) sig. 27 74
  Acinetobacter baumannii LAC-4 RR41_RS11900 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 29 61
  Escherichia coli ECOR38 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 26 77
  Escherichia coli BL21 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase cofit 26 77
  Escherichia coli ECOR27 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 26 77
  Escherichia coli ECRC62 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 26 77
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 26 77
  Escherichia coli BW25113 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) sig. 26 77
  Serratia liquefaciens MT49 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 79
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08425 class I SAM-dependent RNA methyltransferase cofit 27 93
  Pectobacterium carotovorum WPP14 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 27 76
  Mycobacterium tuberculosis H37Rv Rv2689c Conserved alanine and valine and glycine rich protein insig. 29 92
  Enterobacter sp. TBS_079 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 26 77
  Shewanella loihica PV-4 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 25 80
  Escherichia coli ECRC101 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 25 77
  Escherichia coli ECRC100 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 25 77
  Escherichia coli ECRC102 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 25 77
  Escherichia coli ECRC98 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 25 77
  Escherichia coli ECRC99 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA no data 25 77
  Escherichia fergusonii Becca EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 25 77
  Escherichia coli Nissle 1917 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 25 77
  Shewanella sp. ANA-3 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 31 38
  Serratia liquefaciens MT49 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 27 77
  Pectobacterium carotovorum WPP14 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 80
  Klebsiella michiganensis M5al BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 26 77
  Enterobacter asburiae PDN3 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase insig. 25 77
  Pantoea sp. MT58 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 32 39
  Klebsiella pneumoniae MKP103 KDGMDA_09400 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 26 77
  Klebsiella pneumoniae MRSN742743 KFA93_RS22875 trmA;go_function=tRNA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 26 77
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13145 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 27 68
  Erwinia tracheiphila SCR3 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 27 68
  Vibrio cholerae E7946 ATCC 55056 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 31 38
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18390 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 32 39
  Shewanella loihica PV-4 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 25 76
  Acinetobacter radioresistens SK82 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 34 38
  Dickeya dianthicola ME23 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 32 39
  Dickeya dianthicola 67-19 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 32 39
  Dickeya dadantii 3937 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 31 39
  Shewanella oneidensis MR-1 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) sig. 29 38
  Erwinia amylovora T8 OLJFJH_06160 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 26 75
  Shewanella amazonensis SB2B Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) sig. 31 42
  Dechlorosoma suillum PS Dsui_2239 tRNA (uracil-5-)-methyltransferase insig. 29 72
  Paraburkholderia graminis OAS925 ABIE53_002059 putative RNA-binding protein with TRAM domain sig. 33 28
  Bacteroides ovatus ATCC 8483 BACOVA_04930 methyltransferase domain protein insig. 30 19
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_13 SAM-dependent methyltransferase YafE (UbiE paralog) sig. 41 16
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3946 SAM-dependent methyltransferase YafE (UbiE paralog) sig. 36 20
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI insig. 36 19
  Pseudomonas fluorescens FW300-N2E3 AO353_20630 SAM-dependent methyltransferase cofit 40 16
  Escherichia coli ECRC100 OKFHMN_28455 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 30 37
  Escherichia coli ECRC101 MCAODC_21805 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 30 37
  Escherichia coli ECRC102 NIAGMN_27780 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 30 37
  Escherichia coli ECRC98 JDDGAC_06120 prmC peptide chain release factor N(5)-glutamine methyltransferase insig. 30 37
  Escherichia coli ECRC99 KEDOAH_25450 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 30 37
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02475 Release factor glutamine methyltransferase insig. 30 37
  Escherichia coli BW25113 b1212 prmC N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (NCBI) no data 30 37
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07045 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 32 18
  Escherichia coli ECOR27 NOLOHH_20605 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 31 35
  Escherichia coli BL21 ECD_01187 RF-1 and RF-2 N5-glutamine methyltransferase no data 30 37
  Escherichia coli ECOR38 HEPCGN_24920 prmC peptide chain release factor N(5)-glutamine methyltransferase strong 30 37
  Escherichia coli ECRC62 BNILDI_18760 prmC peptide chain release factor N(5)-glutamine methyltransferase cofit 30 37
  Escherichia fergusonii Becca EFB2_02715 Release factor glutamine methyltransferase no data 30 37
  Escherichia coli Nissle 1917 ECOLIN_RS07325 peptide chain release factor N(5)-glutamine methyltransferase no data 30 37
  Vibrio cholerae E7946 ATCC 55056 CSW01_10840 protein-(glutamine-N5) methyltransferase, release factor-specific no data 32 27
  Dickeya dianthicola ME23 DZA65_RS11395 peptide chain release factor N(5)-glutamine methyltransferase insig. 33 26
  Pseudomonas sp. DMC3 GFF787 putative methyltransferase YcgJ cofit 40 16
  Pseudomonas fluorescens SBW25 PFLU_RS20570 class I SAM-dependent methyltransferase insig. 33 20
  Pseudomonas fluorescens SBW25-INTG PFLU_RS20570 class I SAM-dependent methyltransferase strong 33 20
  Rhodanobacter denitrificans MT42 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase insig. 37 17
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase insig. 37 17
  Dinoroseobacter shibae DFL-12 Dshi_2099 protein-L-isoaspartate(D-aspartate) O-methyltransferase (RefSeq) no data 42 16