Homologs of GFF39 from Sphingobium sp. HT1-2

Replication-associated recombination protein RarA
SEED: FIG065221: Holliday junction DNA helicase
KEGG: putative ATPase

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Sphingobium sp. HT1-2	GFF39		Replication-associated recombination protein RarA	cofit	100	100
o	Azospirillum sp. SherDot2	MPMX19_01528		Replication-associated recombination protein A	insig.	67	95
o	Rhodospirillum rubrum S1H	Rru_A2660		AAA ATPase, central region (NCBI)	cofit	66	96
o	Azospirillum brasilense Sp245	AZOBR_RS06885		ATPase AAA	insig.	68	96
o	Sinorhizobium meliloti 1021	SMc01279		recombination factor protein RarA	sig.	64	100
o	Xanthobacter sp. DMC5	GFF1351		Replication-associated recombination protein A	insig.	63	100
o	Rhodopseudomonas palustris CGA009	TX73_016655		replication-associated recombination protein A	insig.	64	96
o	Agrobacterium fabrum C58	Atu1914		ATPase, AAA family protein	insig.	64	96
o	Rhizobium sp. OAE497	ABIE40_RS08045		replication-associated recombination protein A	insig.	63	95
o	Bosea sp. OAE506	ABIE41_RS14690		replication-associated recombination protein A	insig.	62	100
o	Magnetospirillum magneticum AMB-1	AMB_RS17620		replication-associated recombination protein A	cofit	64	100
o	Caulobacter crescentus NA1000	CCNA_01342		ATPase, AAA family	insig.	64	99
o	Caulobacter crescentus NA1000 Δfur	CCNA_01342		ATPase, AAA family	cofit	64	99
o	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS07890		replication-associated recombination protein A	insig.	63	99
o	Dinoroseobacter shibae DFL-12	Dshi_0313		AAA ATPase central domain protein (RefSeq)	insig.	63	99
o	Phaeobacter inhibens DSM 17395	PGA1_c01930		replication-associated recombination protein A	strong	59	100
o	Pseudomonas sp. RS175	PFR28_02606		Replication-associated recombination protein A	insig.	51	94
o	Pseudomonas sp. BP01	JOY50_RS06525		replication-associated recombination protein A	cofit	50	98
o	Pseudomonas fluorescens FW300-N2E3	AO353_27640		recombination factor protein RarA	strong	52	94
o	Pseudomonas putida KT2440	PP_4002		DNA-dependent ATPase required for recombination	strong	50	98
o	Pseudomonas sp. SVBP6	COO64_RS24170		replication-associated recombination protein A	insig.	50	98
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_299		FIG065221: Holliday junction DNA helicase	strong	50	94
o	Pseudomonas fluorescens FW300-N2C3	AO356_22185		recombination factor protein RarA	cofit	50	94
o	Pseudomonas syringae pv. syringae B728a	Psyr_3177		Recombination protein MgsA	insig.	49	98
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_3177		Recombination protein MgsA	insig.	49	98
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_4062		FIG065221: Holliday junction DNA helicase	sig.	51	94
o	Pseudomonas aeruginosa PA14	IKLFDK_13115		recombination factor protein RarA	sig.	50	98
o	Pseudomonas sp. DMC3	GFF1532		Replication-associated recombination protein A	insig.	51	94
o	Pseudomonas aeruginosa MRSN321	DY961_RS04155		replication-associated recombination protein A	insig.	50	98
o	Pseudomonas aeruginosa PUPa3	DQ20_RS35180		replication-associated recombination protein A	insig.	50	98
o	Kangiella aquimarina DSM 16071	B158DRAFT_1819		ATPase related to the helicase subunit of the Holliday junction resolvase	strong	50	96
o	Methylophilus sp. DMC18	GFF351		Replication-associated recombination protein A	insig.	48	99
o	Pseudomonas simiae WCS417	PS417_16480		recombination factor protein RarA	strong	50	98
o	Pseudomonas fluorescens SBW25	PFLU_RS18520		replication-associated recombination protein A	insig.	50	98
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS18520		replication-associated recombination protein A	insig.	50	98
o	Variovorax sp. SCN45	GFF6034		Replication-associated recombination protein RarA	insig.	50	95
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_03623		Replication-associated recombination protein A	cofit	50	97
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_2653		FIG065221: Holliday junction DNA helicase	sig.	50	98
o	Pseudomonas sp. S08-1	OH686_00270		Replication-associated recombination protein RarA	cofit	50	98
o	Pseudomonas orientalis W4I3	QF045_RS18235		replication-associated recombination protein A	cofit	49	98
o	Pseudomonas segetis P6	ACVTMO_RS12580		replication-associated recombination protein A	insig.	50	93
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS16030		replication-associated recombination protein A	insig.	49	95
o	Paraburkholderia graminis OAS925	ABIE53_001292		putative ATPase	strong	49	95
o	Pseudomonas stutzeri RCH2	Psest_2034		ATPase related to the helicase subunit of the Holliday junction resolvase	strong	49	99
o	Variovorax sp. OAS795	ABID97_RS07835		replication-associated recombination protein A	sig.	50	96
o	Ralstonia solanacearum PSI07	RPSI07_RS13205		replication-associated recombination protein A	insig.	48	95
o	Paraburkholderia sabiae LMG 24235	QEN71_RS03415		replication-associated recombination protein A	insig.	49	95
o	Burkholderia phytofirmans PsJN	BPHYT_RS05100		ATPase AAA	insig.	48	95
o	Acidovorax sp. GW101-3H11	Ac3H11_1696		FIG065221: Holliday junction DNA helicase	insig.	49	96
o	Shewanella amazonensis SB2B	Sama_1774		recombination factor protein RarA (RefSeq)	sig.	48	96
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS04145		replication-associated recombination protein A	insig.	48	95
o	Ralstonia solanacearum UW163	UW163_RS09525		replication-associated recombination protein A	insig.	48	95
o	Ralstonia solanacearum GMI1000	RS_RS11735		replication-associated recombination protein A	insig.	49	95
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00180		Recombination protein MgsA	insig.	49	95
o	Dechlorosoma suillum PS	Dsui_1694		AAA ATPase	insig.	49	95
o	Dickeya dadantii 3937	DDA3937_RS09605		replication-associated recombination protein A	insig.	48	93
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS17320		replication-associated recombination protein A	insig.	47	96
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS11700		replication-associated recombination protein A	insig.	47	97
o	Rahnella sp. WP5	EX31_RS18515		replication-associated recombination protein A	insig.	47	93
o	Klebsiella michiganensis M5al	BWI76_RS09670		recombination factor protein RarA	strong	46	93
o	Cupriavidus basilensis FW507-4G11	RR42_RS04355		recombination factor protein RarA	insig.	48	95
o	Alteromonas macleodii MIT1002	MIT1002_02178		Replication-associated recombination protein A	insig.	46	95
o	Rhodanobacter sp. FW510-T8	OKGIIK_07580	rarA	recombination factor protein RarA	insig.	48	96
o	Rhodanobacter denitrificans MT42	LRK55_RS17545		replication-associated recombination protein A	strong	47	96
o	Dickeya dianthicola 67-19	HGI48_RS09620		replication-associated recombination protein A	insig.	46	93
o	Dickeya dianthicola ME23	DZA65_RS09930		replication-associated recombination protein A	insig.	46	93
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS01825		replication-associated recombination protein A	strong	48	94
o	Klebsiella pneumoniae MKP103	KDGMDA_17905		replication-associated recombination protein RarA	sig.	46	93
o	Shewanella sp. ANA-3	Shewana3_2052		recombination factor protein RarA (RefSeq)	insig.	47	96
o	Enterobacter sp. TBS_079	MPMX20_01554		Replication-associated recombination protein A	insig.	46	93
o	Shewanella oneidensis MR-1	SO2308		ATPase, AAA family (NCBI ptt file)	strong	46	96
o	Castellaniella sp019104865 MT123	ABCV34_RS07220		replication-associated recombination protein A	insig.	48	96
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS04430		replication-associated recombination protein A	cofit	46	93
o	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.2744.1		FIG065221: Holliday junction DNA helicase	insig.	47	95
o	Pantoea sp. MT58	IAI47_12900		replication-associated recombination protein A	insig.	46	93
o	Escherichia coli BL21	ECD_00896		recombination intermediate processing DNA-dependent ATPase	cofit	46	93
o	Escherichia fergusonii Becca	EFB2_03169		Replication-associated recombination protein A	insig.	46	93
o	Escherichia coli ECRC100	OKFHMN_05560	rarA	replication-associated recombination protein RarA	cofit	46	93
o	Escherichia coli ECRC101	MCAODC_24950	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Escherichia coli ECRC102	NIAGMN_03280	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Escherichia coli ECRC98	JDDGAC_09370	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Escherichia coli ECRC99	KEDOAH_22175	rarA	replication-associated recombination protein RarA	no data	46	93
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_02776		Replication-associated recombination protein A	insig.	46	93
o	Escherichia coli Nissle 1917	ECOLIN_RS04745		replication-associated recombination protein RarA	insig.	46	93
o	Escherichia coli BW25113	b0892	ycaJ	recombination protein (NCBI)	strong	46	93
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF4896		FIG065221: Holliday junction DNA helicase	insig.	46	93
o	Pectobacterium carotovorum WPP14	HER17_RS12345		replication-associated recombination protein A	cofit	46	93
o	Escherichia coli ECOR27	NOLOHH_22130	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Enterobacter asburiae PDN3	EX28DRAFT_2040		ATPase related to the helicase subunit of the Holliday junction resolvase	insig.	46	93
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_20230		Replication-associated recombination protein A	cofit	45	93
o	Escherichia coli ECRC62	BNILDI_20385	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Escherichia coli ECOR38	HEPCGN_22950	rarA	replication-associated recombination protein RarA	insig.	46	93
o	Erwinia amylovora T8	OLJFJH_16170		recombination factor protein RarA	insig.	46	93
o	Serratia liquefaciens MT49	IAI46_08570		replication-associated recombination protein A	insig.	46	93
o	Shewanella loihica PV-4	Shew_2022		recombination factor protein RarA (RefSeq)	insig.	47	94
o	Marinobacter adhaerens HP15	HP15_1817		recombination factor protein RarA	strong	47	95
o	Vibrio cholerae E7946 ATCC 55056	CSW01_05630		replication-associated recombination protein A	strong	45	98
o	Herbaspirillum seropedicae SmR1	HSERO_RS09515		ATPase AAA	insig.	47	97
o	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_02215		AAA family ATPase	insig.	44	94
o	Erwinia tracheiphila SCR3	LU632_RS09755		replication-associated recombination protein A	insig.	45	92