Homologs of GFF3116 from Sphingobium sp. HT1-2

tmRNA-binding protein SmpB
SEED: tmRNA-binding protein SmpB
KEGG: SsrA-binding protein

124 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3116 tmRNA-binding protein SmpB no data 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0212 SsrA-binding protein no data 78 98
o Caulobacter crescentus NA1000 CCNA_01254 SsrA-binding protein no data 64 91
o Caulobacter crescentus NA1000 Δfur CCNA_01254 SsrA-binding protein no data 64 91
o Agrobacterium fabrum C58 Atu1025 SSRA-binding protein no data 62 93
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05480 SsrA-binding protein SmpB no data 58 96
o Rhodopseudomonas palustris CGA009 TX73_013930 SsrA-binding protein SmpB no data 60 91
o Rhizobium sp. OAE497 ABIE40_RS06035 SsrA-binding protein SmpB no data 63 91
o Sinorhizobium meliloti 1021 SMc02405 SsrA-binding protein no data 56 96
o Bosea sp. OAE506 ABIE41_RS19950 SsrA-binding protein SmpB no data 58 99
o Xanthobacter sp. DMC5 GFF405 SsrA-binding protein no data 59 91
o Azospirillum sp. SherDot2 MPMX19_01218 SsrA-binding protein no data 54 91
o Azospirillum brasilense Sp245 AZOBR_RS08425 single-stranded DNA-binding protein no data 55 90
o Phaeobacter inhibens DSM 17395 PGA1_c29450 SsrA-binding protein SmpB no data 55 93
o Rhodospirillum rubrum S1H Rru_A1864 SmpB protein (NCBI) no data 54 89
o Magnetospirillum magneticum AMB-1 AMB_RS12810 SsrA-binding protein no data 55 90
o Dinoroseobacter shibae DFL-12 Dshi_0147 SsrA-binding protein (RefSeq) no data 49 98
o Mycobacterium tuberculosis H37Rv Rv3100c Probable SSRA-binding protein SmpB no data 52 88
o Rhodanobacter sp. FW510-T8 OKGIIK_07375 smpB SsrA-binding protein SmpB no data 52 91
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11435 SsrA-binding protein SmpB no data 52 91
o Rhodanobacter denitrificans MT42 LRK55_RS17780 SsrA-binding protein SmpB no data 52 91
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17925 SsrA-binding protein SmpB no data 52 91
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3437.1 tmRNA-binding protein SmpB no data 46 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05700 SsrA-binding protein SmpB strong 51 91
o Cellulophaga baltica 18 M666_RS17575 SsrA-binding protein SmpB no data 47 93
o Kangiella aquimarina DSM 16071 B158DRAFT_0969 SsrA-binding protein strong 50 91
o Acinetobacter radioresistens SK82 MPMX26_00737 SsrA-binding protein strong 51 89
o Ralstonia solanacearum PSI07 RPSI07_RS17000 SsrA-binding protein SmpB no data 48 89
o Burkholderia phytofirmans PsJN BPHYT_RS12040 single-stranded DNA-binding protein no data 48 90
o Dechlorosoma suillum PS Dsui_2675 SsrA-binding protein no data 46 90
o Ralstonia solanacearum GMI1000 RS_RS07145 SsrA-binding protein no data 47 89
o Methylophilus sp. DMC18 GFF1142 SsrA-binding protein no data 49 89
o Rahnella sp. WP5 EX31_RS21740 SsrA-binding protein SmpB no data 49 89
o Escherichia coli BL21 ECD_02508 tmRNA-binding trans-translation protein strong 47 89
o Escherichia fergusonii Becca EFB2_01273 SsrA-binding protein sig. 47 89
o Escherichia coli ECOR27 NOLOHH_12795 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli ECOR38 HEPCGN_20245 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli ECRC100 OKFHMN_21125 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli ECRC101 MCAODC_11650 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli ECRC102 NIAGMN_18895 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli ECRC62 BNILDI_11600 smpB SsrA-binding protein SmpB insig. 47 89
o Escherichia coli ECRC98 JDDGAC_24790 smpB SsrA-binding protein SmpB strong 47 89
o Escherichia coli ECRC99 KEDOAH_07095 smpB SsrA-binding protein SmpB no data 47 89
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01087 SsrA-binding protein sig. 47 89
o Escherichia coli Nissle 1917 ECOLIN_RS14795 SsrA-binding protein SmpB no data 47 89
o Escherichia coli BW25113 b2620 smpB SsrA-binding protein (NCBI) strong 47 89
o Lysobacter sp. OAE881 ABIE51_RS11680 SsrA-binding protein SmpB sig. 47 91
o Acinetobacter baumannii LAC-4 RR41_RS15055 SsrA-binding protein SmpB no data 50 89
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS00490 SsrA-binding protein SmpB no data 47 89
o Ralstonia solanacearum UW163 UW163_RS13820 SsrA-binding protein SmpB no data 47 89
o Pectobacterium carotovorum WPP14 HER17_RS17440 SsrA-binding protein SmpB cofit 47 89
o Bifidobacterium breve UCC2003 BBR_RS13045 SsrA-binding protein no data 47 91
o Ralstonia sp. UNC404CL21Col ABZR87_RS11940 SsrA-binding protein SmpB strong 47 89
o Paraburkholderia graminis OAS925 ABIE53_002482 SsrA-binding protein no data 47 90
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00630 SsrA-binding protein no data 46 90
o Paraburkholderia sabiae LMG 24235 QEN71_RS06520 SsrA-binding protein SmpB no data 46 91
o Enterobacter asburiae PDN3 EX28DRAFT_2723 SsrA-binding protein insig. 47 89
o Enterobacter sp. TBS_079 MPMX20_03490 SsrA-binding protein strong 47 89
o Dickeya dianthicola 67-19 HGI48_RS04300 SsrA-binding protein SmpB insig. 46 89
o Dickeya dianthicola ME23 DZA65_RS04215 SsrA-binding protein SmpB insig. 46 89
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10920 SsrA-binding protein strong 46 92
o Dickeya dadantii 3937 DDA3937_RS04305 SsrA-binding protein SmpB no data 46 89
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_26965 smpB SsrA-binding protein SmpB no data 45 97
o Erwinia tracheiphila SCR3 LU632_RS17025 smpB SsrA-binding protein SmpB no data 45 97
o Klebsiella pneumoniae MKP103 KDGMDA_02270 SsrA-binding protein SmpB no data 45 89
o Klebsiella pneumoniae MRSN742743 KFA93_RS24705 smpB;go_function=RNA SsrA-binding protein SmpB no data 45 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4158 tmRNA-binding protein SmpB strong 44 97
o Klebsiella michiganensis M5al BWI76_RS21580 SsrA-binding protein insig. 45 89
o Vibrio cholerae E7946 ATCC 55056 CSW01_04375 SsrA-binding protein sig. 42 99
o Synechocystis sp000284455 PCC 6803 SGL_RS11585 SsrA-binding protein SmpB no data 47 91
o Erwinia amylovora T8 OLJFJH_10155 SsrA-binding protein SmpB no data 47 89
o Pantoea sp. MT58 IAI47_04790 SsrA-binding protein SmpB no data 45 89
o Cupriavidus basilensis FW507-4G11 RR42_RS11775 single-stranded DNA-binding protein no data 46 90
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS14950 SsrA-binding protein insig. 42 90
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS05080 smpB SsrA-binding protein SmpB no data 44 89
o Fusobacterium nucleatum SB010 HUW76_06090 SsrA-binding protein SmpB no data 43 88
o Alteromonas macleodii MIT1002 MIT1002_01806 Small protein B no data 44 91
o Pseudomonas sp. SVBP6 COO64_RS15300 smpB SsrA-binding protein SmpB sig. 46 89
o Pseudomonas sp. BP01 JOY50_RS26715 smpB SsrA-binding protein SmpB insig. 45 89
o Herbaspirillum seropedicae SmR1 HSERO_RS11000 single-stranded DNA-binding protein no data 46 91
o Shewanella amazonensis SB2B Sama_2388 smpB SsrA-binding protein (RefSeq) no data 42 96
o Bacteroides ovatus ATCC 8483 BACOVA_01261 SsrA-binding protein cofit 41 88
o Bacteroides thetaiotaomicron VPI-5482 BT0179 SsrA-binding protein (NCBI ptt file) no data 41 88
o Variovorax sp. OAS795 ABID97_RS16435 SsrA-binding protein SmpB strong 45 91
o Synechococcus elongatus PCC 7942 Synpcc7942_1795 smpB SsrA-binding protein no data 47 91
o Pseudomonas putida KT2440 PP_4733 SsrA-binding protein no data 45 89
o Shewanella loihica PV-4 Shew_1268 smpB SsrA-binding protein (RefSeq) no data 42 95
o Desulfovibrio vulgaris Miyazaki F DvMF_2876 smpB SsrA-binding protein (RefSeq) no data 41 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4352 tmRNA-binding protein SmpB no data 44 91
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04675 SsrA-binding protein no data 42 90
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16680 SsrA-binding protein no data 40 90
o Pseudomonas fluorescens FW300-N2E3 AO353_05690 SsrA-binding protein strong 45 89
o Bacteroides stercoris CC31F HMPREF1181_RS04945 SsrA-binding protein no data 40 90
o Desulfovibrio vulgaris Hildenborough JW710 DVU0828 smpB SsrA-binding protein (TIGR) no data 43 88
o Marinobacter adhaerens HP15 HP15_3090 SsrA-binding protein no data 41 98
o Phocaeicola dorei CL03T12C01 ABI39_RS12595 SsrA-binding protein no data 40 88
o Pseudomonas aeruginosa MRSN321 DY961_RS09600 smpB;go_function=RNA SsrA-binding protein SmpB sig. 46 89
o Pseudomonas aeruginosa PA14 IKLFDK_29750 SsrA-binding protein SmpB strong 46 89
o Pseudomonas aeruginosa PUPa3 DQ20_RS52440 smpB;go_function=RNA SsrA-binding protein SmpB sig. 46 89
o Variovorax sp. SCN45 GFF213 tmRNA-binding protein SmpB cofit 43 90
o Pseudomonas fluorescens FW300-N2C3 AO356_07540 SsrA-binding protein sig. 44 89
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3378 tmRNA-binding protein SmpB no data 44 89
o Pseudomonas sp. RS175 PFR28_00065 SsrA-binding protein no data 44 89
o Castellaniella sp019104865 MT123 ABCV34_RS04010 SsrA-binding protein SmpB no data 42 89
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2086 SsrA-binding protein no data 40 89
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1184 tmRNA-binding protein SmpB no data 44 89
o Pseudomonas sp. S08-1 OH686_17025 SsrA-binding protein cofit 43 90
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5112 tmRNA-binding protein SmpB insig. 44 89
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00810 SsrA-binding protein SmpB no data 42 91
o Acidovorax sp. GW101-3H11 Ac3H11_2861 tmRNA-binding protein SmpB no data 42 91
o Pseudomonas sp. DMC3 GFF4965 SsrA-binding protein cofit 44 89
o Pseudomonas syringae pv. syringae B728a Psyr_4203 SsrA-binding protein sig. 43 90
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4203 SsrA-binding protein strong 43 90
o Pseudomonas simiae WCS417 PS417_24095 SsrA-binding protein no data 44 89
o Pseudomonas fluorescens SBW25 PFLU_RS25935 SsrA-binding protein SmpB strong 43 89
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25935 SsrA-binding protein SmpB no data 43 89
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04969 SsrA-binding protein no data 43 89
o Pseudomonas orientalis W4I3 QF045_RS26350 SsrA-binding protein SmpB insig. 43 89
o Shewanella sp. ANA-3 Shewana3_2952 smpB SsrA-binding protein (RefSeq) no data 37 95
o Pseudomonas segetis P6 ACVTMO_RS05825 smpB SsrA-binding protein SmpB no data 42 89
o Pseudomonas stutzeri RCH2 Psest_0957 SsrA-binding protein no data 43 90
o Shewanella oneidensis MR-1 SO1473 smpB SsrA-binding protein (NCBI ptt file) no data 37 95
o Serratia liquefaciens MT49 IAI46_19655 SsrA-binding protein SmpB cofit 44 89
  Pseudomonas protegens RBAN4 FABNJH_04260 smpB SsrA-binding protein SmpB insig. 40 78