Homologs of Psest_0255 from Pseudomonas stutzeri RCH2

RNA methyltransferase, RsmD family
SEED: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
KEGG: ribosomal RNA small subunit methyltransferase D

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas stutzeri RCH2 Psest_0255 RNA methyltransferase, RsmD family no data 100 100
o Pseudomonas aeruginosa PA14 IKLFDK_23575 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 75 96
o Pseudomonas segetis P6 MPMX49_04418 Ribosomal RNA small subunit methyltransferase D sig. 73 97
o Pseudomonas sp. S08-1 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 73 95
o Pseudomonas syringae pv. syringae B728a Psyr_4754 16S rRNA m(2)G-966 methyltransferase insig. 72 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4754 16S rRNA m(2)G-966 methyltransferase insig. 72 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) strong 73 91
o Pseudomonas fluorescens FW300-N2C3 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 72 91
o Pseudomonas sp. DMC3 GFF229 Ribosomal RNA small subunit methyltransferase D cofit 68 94
o Pseudomonas fluorescens GW456-L13 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) sig. 67 96
o Pseudomonas sp. RS175 PFR28_04262 Ribosomal RNA small subunit methyltransferase D strong 71 91
o Pseudomonas sp. SVBP6 COO64_RS12895 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 70 96
o Pseudomonas fluorescens FW300-N2E3 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 67 96
o Pseudomonas fluorescens SBW25 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 67 94
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 67 94
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) no data 66 96
o Pseudomonas simiae WCS417 PS417_26825 16S rRNA methyltransferase no data 67 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05502 Ribosomal RNA small subunit methyltransferase D no data 66 92
o Pseudomonas putida KT2440 PP_5114 putative adenine methyltransferase strong 66 95
o Pseudomonas sp. BP01 JOY50_RS20810 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 65 95
o Pectobacterium carotovorum WPP14 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 52 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D cofit 51 91
o Rahnella sp. WP5 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 50 100
o Escherichia fergusonii Becca EFB2_00351 Ribosomal RNA small subunit methyltransferase D cofit 51 91
o Escherichia coli ECOR38 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase strong 51 91
o Escherichia coli ECOR27 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase strong 51 91
o Escherichia coli ECRC62 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 51 91
o Escherichia coli Nissle 1917 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 51 91
o Escherichia coli BW25113 b3465 yhhF predicted methyltransferase (NCBI) strong 51 91
o Escherichia coli BL21 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent cofit 51 91
o Escherichia coli ECRC100 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 50 91
o Escherichia coli ECRC101 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 50 91
o Escherichia coli ECRC102 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 50 91
o Escherichia coli ECRC98 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 50 91
o Escherichia coli ECRC99 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase no data 50 91
o Dickeya dadantii 3937 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 49 93
o Dickeya dianthicola 67-19 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 50 89
o Serratia liquefaciens MT49 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 52 92
o Dickeya dianthicola ME23 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 49 89
o Shewanella sp. ANA-3 Shewana3_3973 putative methyltransferase (RefSeq) strong 44 95
o Erwinia tracheiphila SCR3 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 49 91
o Marinobacter adhaerens HP15 HP15_3491 conserved hypothetical protein sig. 48 91
o Pantoea sp. MT58 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 52 93
o Shewanella loihica PV-4 Shew_3607 putative methyltransferase (RefSeq) strong 50 88
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12795 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase no data 49 91
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18045 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 51 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 51 91
o Shewanella oneidensis MR-1 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) strong 44 92
o Shewanella amazonensis SB2B Sama_3469 hypothetical protein (RefSeq) strong 47 94
o Klebsiella pneumoniae MKP103 KDGMDA_07265 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 49 91
o Vibrio cholerae E7946 ATCC 55056 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 48 89
o Klebsiella michiganensis M5al BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 49 91
o Enterobacter asburiae PDN3 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 49 92
o Enterobacter sp. TBS_079 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D sig. 48 93
o Rhodanobacter sp. FW510-T8 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 49 92
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2153.1 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) sig. 48 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 48 90
o Erwinia amylovora T8 OLJFJH_04385 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 50 90
o Rhodanobacter denitrificans MT42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 48 90
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 48 90
o Kangiella aquimarina DSM 16071 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) sig. 43 89
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS15240 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 47 90
  Alteromonas macleodii MIT1002 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D sig. 40 88
o Lysobacter sp. OAE881 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 44 99
o Acinetobacter radioresistens SK82 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D cofit 42 90
o Dechlorosoma suillum PS Dsui_1027 RNA methyltransferase, RsmD family insig. 46 88
o Burkholderia phytofirmans PsJN BPHYT_RS02815 methyltransferase sig. 43 88
o Paraburkholderia sabiae LMG 24235 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 44 92
o Acinetobacter baumannii LAC-4 RR41_RS09020 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD no data 42 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 42 88
o Paraburkholderia graminis OAS925 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase sig. 43 91
o Methylophilus sp. DMC18 GFF765 Ribosomal RNA small subunit methyltransferase D insig. 38 93
o Castellaniella sp019104865 MT123 ABCV34_RS10145 RsmD family RNA methyltransferase insig. 42 87
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 41 89
o Ralstonia solanacearum UW163 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD no data 41 89
o Herbaspirillum seropedicae SmR1 HSERO_RS20695 methyltransferase sig. 38 96
o Ralstonia solanacearum PSI07 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 40 89
o Ralstonia solanacearum GMI1000 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 40 89
o Cupriavidus basilensis FW507-4G11 RR42_RS01990 methyltransferase insig. 37 86
o Acidovorax sp. GW101-3H11 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) no data 40 88
o Ralstonia sp. UNC404CL21Col ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 36 88
o Bosea sp. OAE506 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 37 89
  Caulobacter crescentus NA1000 CCNA_00227 methyltransferase strong 41 72
  Caulobacter crescentus NA1000 Δfur CCNA_00227 methyltransferase insig. 41 72
o Phaeobacter inhibens DSM 17395 PGA1_c29260 ribosomal RNA small subunit methyltransferase D sig. 40 88
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) cofit 37 87
  Sinorhizobium meliloti 1021 SMc00902 hypothetical protein no data 39 74
  Agrobacterium fabrum C58 Atu0690 hypothetical protein sig. 38 72
  Rhizobium sp. OAE497 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 36 74
  Desulfovibrio vulgaris Hildenborough JW710 DVU1531 methyltransferase, putative (TIGR) sig. 37 74
  Sphingobium sp. HT1-2 GFF1635 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 39 73
  Rhodopseudomonas palustris CGA009 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 38 79
o Fusobacterium nucleatum SB010 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 30 84
  Desulfovibrio vulgaris Miyazaki F DvMF_0172 methyltransferase (RefSeq) sig. 38 74
  Xanthobacter sp. DMC5 GFF107 Ribosomal RNA small subunit methyltransferase D insig. 38 72
o Variovorax sp. SCN45 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 37 92
o Azospirillum brasilense Sp245 AZOBR_RS04500 methyltransferase no data 36 89
o Mycobacterium tuberculosis H37Rv Rv2966c Possible methyltransferase (methylase) no data 35 87
  Variovorax sp. OAS795 ABID97_RS23860 RsmD family RNA methyltransferase strong 42 63
o Magnetospirillum magneticum AMB-1 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 35 88