Homologs of GFF2 from Variovorax sp. SCN45

Transcription accessory protein (S1 RNA-binding domain)
SEED: Transcription accessory protein (S1 RNA-binding domain)
KEGG: uncharacterized protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF2 Transcription accessory protein (S1 RNA-binding domain) cofit 100 100
o Variovorax sp. OAS795 ABID97_RS15930 Tex family protein sig. 96 100
o Acidovorax sp. GW101-3H11 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) no data 85 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4649 Transcription accessory protein (S1 RNA-binding domain) insig. 83 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS13340 Tex family protein sig. 61 99
o Dechlorosoma suillum PS Dsui_2546 transcriptional accessory protein cofit 61 99
o Ralstonia solanacearum GMI1000 RS_RS08180 RNA-binding transcriptional accessory protein insig. 62 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01545 RNA-binding transcriptional accessory protein insig. 62 99
o Ralstonia solanacearum UW163 UW163_RS14855 RNA-binding transcriptional accessory protein no data 62 99
o Ralstonia solanacearum PSI07 RPSI07_RS15945 RNA-binding transcriptional accessory protein sig. 61 99
o Cupriavidus basilensis FW507-4G11 RR42_RS07565 transcription accessory protein strong 60 99
o Azospirillum brasilense Sp245 AZOBR_RS14535 RNA-binding protein insig. 62 96
o Lysobacter sp. OAE881 ABIE51_RS00300 Tex family protein insig. 61 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS06045 Tex family protein strong 58 99
o Paraburkholderia graminis OAS925 ABIE53_002728 uncharacterized protein strong 58 99
o Herbaspirillum seropedicae SmR1 HSERO_RS20945 RNA-binding protein sig. 59 97
o Pseudomonas sp. S08-1 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) cofit 58 100
o Burkholderia phytofirmans PsJN BPHYT_RS12510 RNA-binding protein insig. 60 94
o Pseudomonas simiae WCS417 PS417_01165 transcription accessory protein sig. 58 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00530 uncharacterized protein insig. 58 97
o Pseudomonas fluorescens SBW25 PFLU_RS01275 RNA-binding transcriptional accessory protein cofit 58 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS01275 RNA-binding transcriptional accessory protein insig. 58 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00460 Protein YhgF cofit 58 100
o Azospirillum sp. SherDot2 MPMX19_04277 Protein YhgF insig. 60 97
o Pseudomonas orientalis W4I3 QF045_RS04295 Tex family protein cofit 57 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) strong 58 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2426.1 Transcription accessory protein (S1 RNA-binding domain) insig. 60 95
o Pseudomonas fluorescens FW300-N2E3 AO353_11740 DNA damage response protein (yhgF like) (from data) sig. 57 100
o Rhodanobacter sp. FW510-T8 OKGIIK_13735 tex RNA-binding transcriptional accessory protein insig. 59 98
o Magnetospirillum magneticum AMB-1 AMB_RS17285 RNA-binding transcriptional accessory protein cofit 58 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) insig. 57 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS02960 RNA-binding transcriptional accessory protein insig. 59 95
o Pseudomonas sp. DMC3 GFF4184 Protein YhgF cofit 57 100
o Pseudomonas sp. SVBP6 COO64_RS00705 Tex family protein insig. 59 95
o Pseudomonas fluorescens FW300-N2C3 AO356_10175 transcription accessory protein insig. 59 97
o Pseudomonas stutzeri RCH2 Psest_3996 Transcriptional accessory protein strong 58 97
o Marinobacter adhaerens HP15 HP15_216 DNA damage response protein (yhgF like) (from data) sig. 56 99
o Pseudomonas aeruginosa MRSN321 DY961_RS11875 Tex family protein sig. 59 97
o Pseudomonas aeruginosa PA14 IKLFDK_27470 RNA-binding transcriptional accessory protein sig. 59 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS50240 Tex family protein sig. 58 97
o Rhodanobacter denitrificans MT42 LRK55_RS09820 Tex family protein cofit 59 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS10180 RNA-binding transcriptional accessory protein insig. 59 98
o Pseudomonas sp. RS175 PFR28_04867 Protein YhgF insig. 59 97
o Castellaniella sp019104865 MT123 ABCV34_RS01870 Tex family protein insig. 57 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS15750 Tex family protein sig. 61 94
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1771 Transcription accessory protein (S1 RNA-binding domain) sig. 57 100
o Alteromonas macleodii MIT1002 MIT1002_04012 hypothetical protein insig. 56 97
o Escherichia coli ECOR38 HEPCGN_15835 yhgF Protein YhgF insig. 59 96
o Pseudomonas sp. BP01 JOY50_RS18355 Tex family protein insig. 58 95
o Pseudomonas syringae pv. syringae B728a Psyr_0257 RNA binding S1 insig. 57 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0257 RNA binding S1 insig. 57 100
o Escherichia coli BL21 ECD_03259 putative transcriptional accessory protein insig. 59 96
o Escherichia coli ECOR27 NOLOHH_08815 yhgF Protein YhgF insig. 59 96
o Escherichia coli ECRC62 BNILDI_02705 yhgF Protein YhgF cofit 59 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00296 Protein YhgF cofit 59 96
o Escherichia coli BW25113 b3407 yhgF orf, hypothetical protein (VIMSS) sig. 59 96
o Escherichia fergusonii Becca EFB2_00421 Protein YhgF insig. 59 96
o Rhodopseudomonas palustris CGA009 TX73_003025 Tex family protein insig. 57 94
o Escherichia coli Nissle 1917 ECOLIN_RS19465 Tex family protein sig. 58 98
o Escherichia coli ECRC100 OKFHMN_17025 yhgF Protein YhgF cofit 58 96
o Escherichia coli ECRC101 MCAODC_07555 yhgF Protein YhgF insig. 58 96
o Escherichia coli ECRC102 NIAGMN_14795 yhgF Protein YhgF cofit 58 96
o Escherichia coli ECRC98 JDDGAC_20655 yhgF Protein YhgF insig. 58 96
o Escherichia coli ECRC99 KEDOAH_11115 yhgF Protein YhgF no data 58 96
o Pseudomonas putida KT2440 PP_0245 putative transcriptional accessory protein insig. 58 95
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF611 Transcription accessory protein (S1 RNA-binding domain) insig. 58 98
o Klebsiella pneumoniae MKP103 KDGMDA_06990 Protein YhgF sig. 58 98
o Shewanella amazonensis SB2B Sama_3508 hypothetical protein (RefSeq) sig. 57 99
o Dickeya dadantii 3937 DDA3937_RS19635 RNA-binding transcriptional accessory protein sig. 56 98
o Enterobacter sp. TBS_079 MPMX20_04294 Protein YhgF insig. 57 98
o Kangiella aquimarina DSM 16071 B158DRAFT_0683 Transcriptional accessory protein strong 54 98
o Klebsiella michiganensis M5al BWI76_RS26655 transcription accessory protein insig. 58 98
o Pseudomonas segetis P6 ACVTMO_RS03815 Tex family protein sig. 57 100
o Dickeya dianthicola 67-19 HGI48_RS19770 RNA-binding transcriptional accessory protein insig. 56 99
o Dickeya dianthicola ME23 DZA65_RS20860 RNA-binding transcriptional accessory protein insig. 56 98
o Pectobacterium carotovorum WPP14 HER17_RS01615 RNA-binding transcriptional accessory protein cofit 57 97
o Shewanella oneidensis MR-1 SO4629 conserved hypothetical protein (NCBI ptt file) sig. 55 99
o Enterobacter asburiae PDN3 EX28DRAFT_4136 Transcriptional accessory protein insig. 59 94
o Pantoea sp. MT58 IAI47_01805 RNA-binding transcriptional accessory protein insig. 56 99
o Shewanella sp. ANA-3 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) sig. 56 99
o Serratia liquefaciens MT49 IAI46_23800 RNA-binding transcriptional accessory protein insig. 57 97
o Rahnella sp. WP5 EX31_RS04840 RNA-binding transcriptional accessory protein insig. 58 95
o Erwinia tracheiphila SCR3 LU632_RS22955 RNA-binding transcriptional accessory protein insig. 56 98
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_11945 RNA-binding transcriptional accessory protein no data 55 98
o Shewanella loihica PV-4 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) sig. 55 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18325 RNA-binding transcriptional accessory protein cofit 56 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_13705 RNA-binding transcriptional accessory protein insig. 54 97
o Erwinia amylovora T8 OLJFJH_04170 RNA-binding transcriptional accessory protein cofit 56 96
o Phaeobacter inhibens DSM 17395 PGA1_c09850 S1 domain-containing protein insig. 56 98
o Xanthobacter sp. DMC5 GFF4426 Protein YhgF insig. 59 95
o Sinorhizobium meliloti 1021 SMc02644 hypothetical protein insig. 56 99
o Rhizobium sp. OAE497 ABIE40_RS05475 Tex family protein insig. 54 99
o Agrobacterium fabrum C58 Atu0648 hypothetical protein insig. 55 97
o Acinetobacter radioresistens SK82 MPMX26_02837 Protein YhgF cofit 47 99
o Acinetobacter baumannii LAC-4 RR41_RS01395 RNA-binding transcriptional accessory protein insig. 47 98
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02750 RNA-binding transcriptional accessory protein insig. 46 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS18880 RNA-binding transcriptional accessory protein insig. 44 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3978 Transcriptional accessory protein insig. 44 99
o Bacteroides stercoris CC31F HMPREF1181_RS04035 RNA-binding transcriptional accessory protein insig. 44 93
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21695 Tex family protein insig. 46 93