Homologs of GFF1973 from Xanthobacter sp. DMC5

DNA polymerase I
SEED: DNA polymerase I (EC 2.7.7.7)
KEGG: DNA polymerase I

183 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF1973 DNA polymerase I no data 100 100
o Bosea sp. OAE506 ABIE41_RS03570 DNA polymerase I strong 70 99
o Rhodopseudomonas palustris CGA009 TX73_024545 DNA polymerase I insig. 64 100
o Agrobacterium fabrum C58 Atu0110 DNA polymerase I no data 61 99
o Sinorhizobium meliloti 1021 SMc02850 DNA polymerase I strong 60 99
o Rhizobium sp. OAE497 ABIE40_RS00490 DNA polymerase I strong 60 99
o Caulobacter crescentus NA1000 CCNA_03577 DNA polymerase I strong 59 99
o Caulobacter crescentus NA1000 Δfur CCNA_03577 DNA polymerase I cofit 59 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13840 DNA polymerase I no data 56 99
o Phaeobacter inhibens DSM 17395 PGA1_c31780 DNA polymerase I strong 55 99
o Dinoroseobacter shibae DFL-12 Dshi_2909 DNA polymerase I (RefSeq) strong 54 99
o Azospirillum brasilense Sp245 AZOBR_RS30685 DNA polymerase strong 53 100
o Magnetospirillum magneticum AMB-1 AMB_RS21305 DNA polymerase I no data 54 99
o Azospirillum sp. SherDot2 MPMX19_04869 DNA polymerase I sig. 54 99
o Rhodospirillum rubrum S1H Rru_A3514 DNA polymerase A (NCBI) no data 52 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) strong 49 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04189 DNA polymerase I no data 45 99
o Escherichia coli BL21 ECD_03749 5 no data 45 99
o Escherichia coli ECOR27 NOLOHH_06280 polA DNA polymerase I no data 45 99
o Escherichia coli BW25113 b3863 polA DNA polymerase I (NCBI) sig. 45 99
o Escherichia coli ECRC100 OKFHMN_14150 polA DNA polymerase I no data 45 99
o Escherichia coli ECRC101 MCAODC_04650 polA DNA polymerase I no data 45 99
o Escherichia coli ECRC102 NIAGMN_11905 polA DNA polymerase I no data 45 99
o Escherichia coli ECRC98 JDDGAC_17775 polA DNA polymerase I no data 45 99
o Escherichia coli ECRC99 KEDOAH_14000 polA DNA polymerase I no data 45 99
o Escherichia coli ECRC62 BNILDI_05250 polA DNA polymerase I no data 45 99
o Escherichia coli Nissle 1917 ECOLIN_RS22270 DNA polymerase I no data 45 99
o Escherichia coli ECOR38 HEPCGN_12785 polA DNA polymerase I no data 44 99
o Escherichia fergusonii Becca EFB2_04753 DNA polymerase I no data 44 99
o Dickeya dianthicola ME23 DZA65_RS22235 DNA polymerase I no data 42 99
o Dickeya dianthicola 67-19 HGI48_RS21260 DNA polymerase I no data 43 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_00560 DNA polymerase I strong 42 99
o Dickeya dadantii 3937 DDA3937_RS00105 DNA polymerase I no data 42 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2216 DNA polymerase I (EC 2.7.7.7) strong 43 99
o Pectobacterium carotovorum WPP14 HER17_RS21470 DNA polymerase I no data 42 99
o Enterobacter asburiae PDN3 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) no data 44 99
o Enterobacter sp. TBS_079 MPMX20_04601 DNA polymerase I sig. 43 99
o Rahnella sp. WP5 EX31_RS15905 DNA polymerase I sig. 43 99
o Serratia liquefaciens MT49 IAI46_24985 DNA polymerase I strong 43 99
o Klebsiella pneumoniae MRSN742743 KFA93_RS22455 polA;go_function=nucleic DNA polymerase I strong 44 99
o Pseudomonas sp. BP01 JOY50_RS21110 polA DNA polymerase I cofit 42 99
o Pseudomonas putida KT2440 PP_0123 DNA polymerase I, 5 strong 42 99
o Alteromonas macleodii MIT1002 MIT1002_00014 DNA polymerase I strong 41 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS15680 DNA polymerase I strong 42 99
o Ralstonia solanacearum PSI07 RPSI07_RS13480 DNA polymerase I sig. 43 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18920 DNA polymerase I cofit 42 99
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03750 DNA polymerase I strong 43 99
o Ralstonia solanacearum UW163 UW163_RS09920 DNA polymerase I insig. 43 99
o Pseudomonas sp. SVBP6 COO64_RS02475 polA DNA polymerase I cofit 42 99
o Pantoea sp. MT58 IAI47_00430 DNA polymerase I strong 42 99
o Acinetobacter radioresistens SK82 MPMX26_00574 DNA polymerase I sig. 41 98
o Erwinia amylovora T8 OLJFJH_05470 DNA polymerase I cofit 41 99
o Ralstonia solanacearum GMI1000 RS_RS11195 DNA polymerase I sig. 43 99
o Pseudomonas sp. S08-1 OH686_12215 DNA polymerase I cofit 42 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) strong 41 99
o Pseudomonas stutzeri RCH2 Psest_4219 DNA polymerase I sig. 42 99
o Acinetobacter baumannii LAC-4 RR41_RS15915 DNA polymerase I no data 40 98
o Lysobacter sp. OAE881 ABIE51_RS02010 DNA polymerase I insig. 42 100
o Shewanella amazonensis SB2B Sama_0093 DNA-directed DNA polymerase (RefSeq) sig. 42 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) no data 42 99
o Methylophilus sp. DMC18 GFF1658 DNA polymerase I sig. 42 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5584 DNA polymerase I (EC 2.7.7.7) strong 42 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01570 DNA polymerase I insig. 42 99
o Pseudomonas segetis P6 ACVTMO_RS01575 polA DNA polymerase I strong 42 99
o Pseudomonas simiae WCS417 PS417_00405 DNA polymerase I strong 41 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_10990 polA DNA polymerase I no data 40 99
o Pseudomonas sp. DMC3 GFF631 DNA polymerase I cofit 41 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) strong 41 99
o Erwinia tracheiphila SCR3 LU632_RS23870 polA DNA polymerase I no data 40 99
o Pseudomonas fluorescens FW300-N2C3 AO356_11465 DNA polymerase I strong 41 99
o Variovorax sp. SCN45 GFF4006 DNA polymerase I (EC 2.7.7.7) strong 41 99
o Pseudomonas sp. RS175 PFR28_04624 DNA polymerase I sig. 41 99
o Pseudomonas orientalis W4I3 QF045_RS03350 DNA polymerase I cofit 40 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00284 DNA polymerase I cofit 41 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS17885 DNA polymerase I no data 41 99
o Herbaspirillum seropedicae SmR1 HSERO_RS02260 DNA polymerase I strong 41 99
o Pseudomonas syringae pv. syringae B728a Psyr_0270 DNA polymerase I insig. 40 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0270 DNA polymerase I insig. 40 99
o Shewanella loihica PV-4 Shew_3714 DNA polymerase I (RefSeq) strong 41 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) no data 40 99
o Shewanella sp. ANA-3 Shewana3_4109 DNA polymerase I (RefSeq) no data 40 99
o Acidovorax sp. GW101-3H11 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) no data 41 99
o Variovorax sp. OAS795 ABID97_RS09180 DNA polymerase I strong 40 99
o Rhodanobacter denitrificans MT42 LRK55_RS06585 DNA polymerase I cofit 41 99
o Bacteroides stercoris CC31F HMPREF1181_RS02070 DNA polymerase I sig. 38 99
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS06335 DNA polymerase I sig. 38 99
o Marinobacter adhaerens HP15 HP15_293 DNA polymerase I strong 41 93
o Burkholderia phytofirmans PsJN BPHYT_RS33610 DNA polymerase I insig. 41 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS06840 DNA polymerase I strong 41 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06022 DNA polymerase I strong 41 100
o Rhodanobacter sp. FW510-T8 OKGIIK_16785 polA DNA polymerase I cofit 41 99
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20185 DNA polymerase I sig. 39 99
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19630 DNA polymerase I strong 39 99
o Paraburkholderia graminis OAS925 ABIE53_004852 DNA polymerase-1 strong 41 100
o Bacteroides ovatus ATCC 8483 BACOVA_01357 DNA-directed DNA polymerase cofit 37 99
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1032 DNA polymerase I strong 37 99
o Cellulophaga baltica 18 M666_RS07555 DNA polymerase I insig. 37 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11500 DNA polymerase I strong 37 99
o Phocaeicola dorei CL03T12C01 ABI39_RS05440 DNA polymerase I no data 37 99
o Bacteroides thetaiotaomicron VPI-5482 BT3260 DNA polymerase I (NCBI ptt file) sig. 37 99
o Castellaniella sp019104865 MT123 ABCV34_RS02195 DNA polymerase I insig. 41 99
  Pseudomonas aeruginosa MRSN321 DY961_RS25765 polA;go_function=nucleic DNA polymerase I strong 50 62
  Pseudomonas aeruginosa PUPa3 DQ20_RS58195 polA;go_function=nucleic DNA polymerase I strong 50 62
  Pseudomonas aeruginosa PA14 IKLFDK_25945 DNA polymerase I sig. 50 62
  Pseudomonas fluorescens FW300-N2E3 AO353_10930 DNA polymerase I strong 49 61
  Klebsiella pneumoniae MKP103 KDGMDA_08970 DNA polymerase I no data 50 62
  Klebsiella michiganensis M5al BWI76_RS00355 DNA polymerase I sig. 50 62
  Cupriavidus basilensis FW507-4G11 RR42_RS15050 DNA polymerase I strong 50 61
  Pseudomonas fluorescens SBW25 PFLU_RS00395 DNA polymerase I cofit 47 61
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00395 DNA polymerase I strong 47 61
  Pseudomonas fluorescens GW456-L13 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) strong 47 61
  Dechlorosoma suillum PS Dsui_0459 DNA polymerase I insig. 48 62
  Shewanella oneidensis MR-1 SO4669 polA DNA polymerase I (NCBI ptt file) no data 48 61
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS17015 DNA polymerase I strong 47 61
o Synechococcus elongatus PCC 7942 Synpcc7942_0194 polA DNA polymerase I no data 37 99
o Synechocystis sp000284455 PCC 6803 SGL_RS16290 DNA polymerase I no data 36 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_16535 DNA polymerase I no data 45 59
  Fusobacterium nucleatum SB010 HUW76_04385 DNA polymerase I strong 32 98
  Desulfovibrio vulgaris Hildenborough JW710 DVU0496 polA DNA polymerase I (TIGR) insig. 45 43
  Desulfovibrio vulgaris Miyazaki F DvMF_1713 DNA polymerase I (RefSeq) no data 45 43
  Mycobacterium tuberculosis H37Rv Rv1629 Probable DNA polymerase I PolA no data 43 43
  Bifidobacterium breve UCC2003 BBR_RS14315 DNA polymerase I strong 39 43
  Sphingobium sp. HT1-2 GFF3778 DNA polymerase I (EC 2.7.7.7) cofit 46 30
  Mycobacterium tuberculosis H37Rv Rv1629 Probable DNA polymerase I PolA no data 36 32
  Lysobacter sp. OAE881 ABIE51_RS05515 5'-3' exonuclease H3TH domain-containing protein insig. 37 30
  Bifidobacterium breve UCC2003 BBR_RS14315 DNA polymerase I strong 33 29
  Desulfovibrio vulgaris Miyazaki F DvMF_1713 DNA polymerase I (RefSeq) no data 33 32
  Desulfovibrio vulgaris Hildenborough JW710 DVU0496 polA DNA polymerase I (TIGR) insig. 34 36
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS22160 5'-3' exonuclease H3TH domain-containing protein insig. 37 29
  Rhodanobacter denitrificans MT42 LRK55_RS03615 5'-3' exonuclease H3TH domain-containing protein insig. 34 30
  Shewanella oneidensis MR-1 SO4669 polA DNA polymerase I (NCBI ptt file) no data 32 30
  Rhodanobacter sp. FW510-T8 OKGIIK_10715 Exodeoxyribonuclease IX insig. 36 27
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4215.1 DNA polymerase I 5'-3' exonuclease domain insig. 33 33
  Pseudomonas fluorescens FW300-N2E3 AO353_10930 DNA polymerase I strong 34 29
  Pseudomonas fluorescens SBW25 PFLU_RS00395 DNA polymerase I cofit 34 29
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00395 DNA polymerase I strong 34 29
  Dechlorosoma suillum PS Dsui_0459 DNA polymerase I insig. 34 30
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS03865 exodeoxyribonuclease IX insig. 33 29
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS06075 exodeoxyribonuclease IX insig. 35 26
  Shewanella oneidensis MR-1 SO1549 xni exodeoxyribonuclease IX (NCBI ptt file) insig. 34 24
  Pseudomonas aeruginosa PA14 IKLFDK_25945 DNA polymerase I sig. 34 29
  Pseudomonas aeruginosa MRSN321 DY961_RS25765 polA;go_function=nucleic DNA polymerase I strong 34 29
  Pseudomonas aeruginosa PUPa3 DQ20_RS58195 polA;go_function=nucleic DNA polymerase I strong 34 29
  Shewanella sp. ANA-3 Shewana3_2886 xni exonuclease IX (RefSeq) insig. 31 28
  Erwinia amylovora T8 OLJFJH_09185 flap endonuclease Xni insig. 35 22
  Pectobacterium carotovorum WPP14 HER17_RS16400 flap endonuclease Xni insig. 34 23
  Serratia liquefaciens MT49 IAI46_20325 flap endonuclease Xni insig. 36 22
  Dickeya dadantii 3937 DDA3937_RS05065 flap endonuclease Xni insig. 36 22
  Dickeya dianthicola 67-19 HGI48_RS05065 flap endonuclease Xni insig. 36 22
  Dickeya dianthicola ME23 DZA65_RS05405 flap endonuclease Xni insig. 36 22
  Klebsiella pneumoniae MKP103 KDGMDA_03465 flap endonuclease Xni insig. 35 22
  Klebsiella pneumoniae MRSN742743 KFA93_RS17405 xni;go_function=DNA flap endonuclease Xni insig. 35 22
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_17290 xni flap endonuclease Xni cofit 35 22
  Shewanella amazonensis SB2B Sama_2420 xni exonuclease IX (RefSeq) insig. 30 27
  Enterobacter sp. TBS_079 MPMX20_03668 Flap endonuclease Xni insig. 37 22
  Enterobacter asburiae PDN3 EX28DRAFT_2880 5'-3' exonuclease (including N-terminal domain of PolI) insig. 36 22
  Pantoea sp. MT58 IAI47_04040 flap endonuclease Xni insig. 35 22
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16930 flap endonuclease Xni cofit 35 22
  Erwinia tracheiphila SCR3 LU632_RS06270 xni flap endonuclease Xni insig. 35 22
  Klebsiella michiganensis M5al BWI76_RS22910 flap endonuclease Xni insig. 35 22
  Cupriavidus basilensis FW507-4G11 RR42_RS26565 5'-3' exonuclease insig. 35 26
  Shewanella loihica PV-4 Shew_2756 xni exonuclease IX (RefSeq) insig. 30 28
  Rahnella sp. WP5 EX31_RS13095 flap endonuclease Xni insig. 36 22
  Mycobacterium tuberculosis H37Rv Rv2090 Probable 5'-3' exonuclease insig. 33 23
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4854 DNA polymerase I (EC 2.7.7.7) insig. 33 23
  Escherichia coli BL21 ECD_02643 Ssb-binding protein, misidentified as ExoIX insig. 32 23
  Escherichia fergusonii Becca EFB2_01119 Flap endonuclease Xni insig. 32 23
  Escherichia coli ECOR27 NOLOHH_12050 xni flap endonuclease Xni insig. 32 23
  Escherichia coli ECRC100 OKFHMN_20170 xni flap endonuclease Xni insig. 32 23
  Escherichia coli ECRC101 MCAODC_10695 xni flap endonuclease Xni insig. 32 23
  Escherichia coli ECRC102 NIAGMN_17940 xni flap endonuclease Xni insig. 32 23
  Escherichia coli ECRC62 BNILDI_10555 xni flap endonuclease Xni cofit 32 23
  Escherichia coli ECRC98 JDDGAC_23835 xni flap endonuclease Xni insig. 32 23
  Escherichia coli ECRC99 KEDOAH_07960 xni flap endonuclease Xni no data 32 23
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00933 Flap endonuclease Xni insig. 32 23
  Escherichia coli Nissle 1917 ECOLIN_RS15600 flap endonuclease Xni insig. 32 23
  Escherichia coli BW25113 b2798 ygdG Ssb-binding protein, misidentified as ExoIX (RefSeq) insig. 32 23
  Escherichia coli ECOR38 HEPCGN_19425 xni flap endonuclease Xni insig. 32 23
  Vibrio cholerae E7946 ATCC 55056 CSW01_04600 flap endonuclease Xni insig. 31 22
  Dinoroseobacter shibae DFL-12 Dshi_3653 DNA-directed DNA polymerase (RefSeq) insig. 24 26
  Bacteroides stercoris CC31F HMPREF1181_RS17185 DNA polymerase I no data 53 6
  Dinoroseobacter shibae DFL-12 Dshi_3589 3'-5' exonuclease (RefSeq) no data 31 21
  Bosea sp. OAE506 ABIE41_RS00145 ribonuclease D no data 28 18