Homologs of Psest_1740 from Pseudomonas stutzeri RCH2

RNA polymerase sigma factor, FliA/WhiG family
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas stutzeri RCH2 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family strong 100 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon insig. 87 98
o Pseudomonas sp. DMC3 GFF2472 RNA polymerase sigma factor FliA cofit 85 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon insig. 86 98
o Pseudomonas fluorescens FW300-N2E3 AO353_18785 flagellar biosynthesis sigma factor strong 86 98
o Pseudomonas fluorescens FW300-N2C3 AO356_03730 flagellar biosynthesis sigma factor strong 86 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon strong 86 98
o Pseudomonas sp. SVBP6 COO64_RS25625 fliA RNA polymerase sigma factor FliA cofit 87 99
o Pseudomonas sp. RS175 PFR28_00852 RNA polymerase sigma factor FliA strong 86 98
o Pseudomonas sp. S08-1 OH686_02730 RNA polymerase sigma factor for flagellar operon cofit 84 99
o Pseudomonas fluorescens SBW25 PFLU_RS21660 RNA polymerase sigma factor FliA cofit 86 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21660 RNA polymerase sigma factor FliA strong 86 98
o Pseudomonas simiae WCS417 PS417_19695 flagellar biosynthesis sigma factor strong 86 98
o Pseudomonas sp. BP01 JOY50_RS00585 fliA RNA polymerase sigma factor FliA cofit 85 99
o Pseudomonas segetis P6 MPMX49_03127 RNA polymerase sigma factor FliA strong 83 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04138 RNA polymerase sigma factor FliA cofit 85 98
o Pseudomonas putida KT2440 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons strong 84 99
o Pseudomonas syringae pv. syringae B728a Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 84 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG cofit 84 99
o Pseudomonas aeruginosa PA14 IKLFDK_06920 flagellar biosynthesis sigma factor FliA strong 82 99
o Marinobacter adhaerens HP15 HP15_2302 flagellar biosynthesis sigma factor FliA strong 61 99
o Alteromonas macleodii MIT1002 MIT1002_01103 Sigma-F factor sig. 56 98
o Shewanella loihica PV-4 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) strong 58 95
o Shewanella amazonensis SB2B Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) strong 57 98
o Shewanella oneidensis MR-1 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) strong 57 95
o Shewanella sp. ANA-3 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) strong 57 95
o Vibrio cholerae E7946 ATCC 55056 CSW01_10335 RNA polymerase sigma factor FliA cofit 54 100
o Rhodanobacter denitrificans MT42 LRK55_RS13320 RNA polymerase sigma factor FliA cofit 59 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13580 RNA polymerase sigma factor FliA strong 59 94
o Rhodanobacter sp. FW510-T8 OKGIIK_02830 fliA RNA polymerase sigma factor FliA insig. 56 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS14995 RNA polymerase sigma factor FliA insig. 58 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS20265 RNA polymerase sigma factor FliA insig. 55 96
o Lysobacter sp. OAE881 ABIE51_RS16865 RNA polymerase sigma factor FliA strong 55 94
o Dechlorosoma suillum PS Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family cofit 51 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS28940 RNA polymerase sigma factor FliA strong 52 97
o Paraburkholderia graminis OAS925 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA strong 51 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_21960 fliA RNA polymerase sigma factor FliA cofit 55 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 51 97
o Burkholderia phytofirmans PsJN BPHYT_RS18925 RNA polymerase sigma70 strong 50 97
o Erwinia tracheiphila SCR3 LU632_RS13785 RNA polymerase sigma factor FliA insig. 55 93
o Serratia liquefaciens MT49 IAI46_15785 RNA polymerase sigma factor FliA insig. 56 91
o Dickeya dianthicola 67-19 HGI48_RS13350 RNA polymerase sigma factor FliA cofit 55 92
o Dickeya dianthicola ME23 DZA65_RS13835 RNA polymerase sigma factor FliA strong 55 92
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon cofit 56 92
o Pantoea sp. MT58 IAI47_08160 RNA polymerase sigma factor FliA cofit 52 98
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS02055 RNA polymerase sigma factor FliA cofit 52 98
o Dickeya dadantii 3937 DDA3937_RS13300 RNA polymerase sigma factor FliA strong 55 92
o Erwinia amylovora T8 OLJFJH_12555 RNA polymerase sigma factor FliA sig. 54 93
o Herbaspirillum seropedicae SmR1 HSERO_RS10160 flagellar biosynthesis sigma factor strong 47 98
o Escherichia coli ECOR27 NOLOHH_16400 fliA RNA polymerase sigma factor FliA cofit 53 94
o Escherichia coli ECOR38 HEPCGN_04135 fliA RNA polymerase sigma factor FliA insig. 53 94
o Escherichia coli ECRC100 OKFHMN_25780 fliA RNA polymerase sigma factor FliA cofit 53 94
o Escherichia coli ECRC101 MCAODC_19610 fliA RNA polymerase sigma factor FliA insig. 53 94
o Escherichia coli ECRC102 NIAGMN_02270 fliA RNA polymerase sigma factor FliA insig. 53 94
o Escherichia coli ECRC62 BNILDI_15190 fliA RNA polymerase sigma factor FliA cofit 53 94
o Escherichia coli ECRC98 JDDGAC_00370 fliA RNA polymerase sigma factor FliA insig. 53 94
o Escherichia coli ECRC99 KEDOAH_02310 fliA RNA polymerase sigma factor FliA no data 53 94
o Escherichia coli Nissle 1917 ECOLIN_RS10975 RNA polymerase sigma factor FliA insig. 53 94
o Escherichia coli BW25113 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) sig. 53 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01807 RNA polymerase sigma factor FliA insig. 53 94
o Escherichia fergusonii Becca EFB2_02023 RNA polymerase sigma factor FliA insig. 53 94
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS17485 RNA polymerase sigma factor FliA insig. 49 91
o Ralstonia solanacearum UW163 UW163_RS21665 RNA polymerase sigma factor FliA insig. 49 91
o Rahnella sp. WP5 EX31_RS09450 RNA polymerase sigma factor FliA cofit 54 92
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1690 RNA polymerase sigma factor for flagellar operon strong 52 94
o Enterobacter asburiae PDN3 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family cofit 52 94
o Enterobacter sp. TBS_079 MPMX20_02847 RNA polymerase sigma factor FliA strong 52 94
o Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 45 98
o Ralstonia solanacearum PSI07 RPSI07_RS06165 RNA polymerase sigma factor FliA insig. 49 91
o Cupriavidus basilensis FW507-4G11 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor insig. 51 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS18040 RNA polymerase sigma factor FliA strong 49 90
o Ralstonia solanacearum GMI1000 RS_RS23830 RNA polymerase sigma factor FliA insig. 48 91
o Methylophilus sp. DMC18 GFF1338 RNA polymerase sigma factor FliA cofit 44 98
o Pectobacterium carotovorum WPP14 HER17_RS08355 RNA polymerase sigma factor FliA cofit 53 92
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1428 RNA polymerase sigma factor for flagellar operon insig. 42 98
o Castellaniella sp019104865 MT123 ABCV34_RS05605 RNA polymerase sigma factor FliA sig. 49 92
o Variovorax sp. SCN45 GFF5774 RNA polymerase sigma factor for flagellar operon insig. 44 95
  Erwinia amylovora T8 OLJFJH_10105 RNA polymerase sigma factor FliA insig. 37 90
o Desulfovibrio vulgaris Miyazaki F DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) strong 42 92
o Desulfovibrio vulgaris Hildenborough JW710 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) strong 41 90
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4065 RNA polymerase sigma factor for flagellar operon insig. 35 95
  Pseudomonas stutzeri RCH2 Psest_4160 RNA polymerase sigma factor, FliA/WhiG family insig. 40 93
o Sphingobium sp. HT1-2 GFF3722 RNA polymerase sigma factor for flagellar operon cofit 33 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family cofit 33 92
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_14635 RNA polymerase sigma factor FliA no data 37 94
  Erwinia tracheiphila SCR3 LU632_RS20475 FliA/WhiG family RNA polymerase sigma factor no data 37 94
  Escherichia coli Nissle 1917 ECOLIN_RS10960 sigma-70 family RNA polymerase sigma factor no data 69 24
  Phocaeicola dorei CL03T12C01 ABI39_RS13985 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17770 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Synechocystis sp000284455 PCC 6803 SGL_RS12540 RNA polymerase sigma factor, RpoD/SigA family strong 29 98
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 30 79
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 30 79
  Cellulophaga baltica 18 M666_RS16995 RNA polymerase sigma factor RpoD/SigA insig. 29 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 28 79
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA no data 30 79
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1726 RNA polymerase sigma factor, sigma-70 family insig. 28 90
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15895 RNA polymerase sigma factor RpoD/SigA no data 28 79
  Variovorax sp. SCN45 GFF6984 RNA polymerase sigma factor for flagellar operon insig. 26 83
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 24 96