Homologs of GFF107 from Xanthobacter sp. DMC5

Ribosomal RNA small subunit methyltransferase D
KEGG: ribosomal RNA small subunit methyltransferase D

153 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF107 Ribosomal RNA small subunit methyltransferase D insig. 100 100
o Bosea sp. OAE506 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 64 99
o Rhodopseudomonas palustris CGA009 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 61 98
o Sinorhizobium meliloti 1021 SMc00902 hypothetical protein no data 58 98
o Rhizobium sp. OAE497 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 54 98
o Agrobacterium fabrum C58 Atu0690 hypothetical protein sig. 56 98
o Caulobacter crescentus NA1000 CCNA_00227 methyltransferase strong 52 99
o Caulobacter crescentus NA1000 Δfur CCNA_00227 methyltransferase insig. 52 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 51 99
o Phaeobacter inhibens DSM 17395 PGA1_c29260 ribosomal RNA small subunit methyltransferase D sig. 48 99
o Dinoroseobacter shibae DFL-12 Dshi_0115 putative methyltransferase (RefSeq) strong 48 99
o Rhodospirillum rubrum S1H Rru_A0653 hypothetical protein (NCBI) no data 44 99
o Azospirillum brasilense Sp245 AZOBR_RS04500 methyltransferase no data 45 98
o Azospirillum sp. SherDot2 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D no data 44 98
o Magnetospirillum magneticum AMB-1 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 44 98
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0246 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 40 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12795 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase no data 40 90
o Erwinia tracheiphila SCR3 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 40 90
o Mycobacterium tuberculosis H37Rv Rv2966c Possible methyltransferase (methylase) no data 42 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D cofit 42 90
o Bifidobacterium breve UCC2003 BBR_RS19290 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 39 99
  Shewanella amazonensis SB2B Sama_3469 hypothetical protein (RefSeq) strong 39 93
o Escherichia coli ECOR27 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase strong 41 90
o Escherichia coli ECOR38 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase strong 41 90
o Escherichia coli ECRC62 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 41 90
o Escherichia coli Nissle 1917 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 41 90
o Escherichia coli BW25113 b3465 yhhF predicted methyltransferase (NCBI) strong 41 90
o Escherichia fergusonii Becca EFB2_00351 Ribosomal RNA small subunit methyltransferase D cofit 41 90
o Desulfovibrio vulgaris Miyazaki F DvMF_0172 methyltransferase (RefSeq) sig. 41 89
o Sphingobium sp. HT1-2 GFF1635 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 41 98
o Escherichia coli ECRC100 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 41 90
o Escherichia coli ECRC101 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 41 90
o Escherichia coli ECRC102 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 41 90
o Escherichia coli ECRC98 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 41 90
o Escherichia coli ECRC99 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase no data 41 90
o Escherichia coli BL21 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent sig. 40 90
  Pectobacterium carotovorum WPP14 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 44 83
o Desulfovibrio vulgaris Hildenborough JW710 DVU1531 methyltransferase, putative (TIGR) sig. 38 98
o Kangiella aquimarina DSM 16071 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) sig. 33 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 42 83
  Pseudomonas sp. S08-1 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 40 85
o Fusobacterium nucleatum SB010 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 32 98
  Enterobacter sp. TBS_079 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D sig. 41 83
o Dickeya dianthicola 67-19 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 36 100
  Enterobacter asburiae PDN3 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 41 83
o Dickeya dianthicola ME23 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 35 100
o Dickeya dadantii 3937 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 35 100
o Rhodanobacter sp. FW510-T8 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 43 90
  Serratia liquefaciens MT49 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 40 83
  Pseudomonas syringae pv. syringae B728a Psyr_4754 16S rRNA m(2)G-966 methyltransferase insig. 41 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4754 16S rRNA m(2)G-966 methyltransferase insig. 41 85
  Pseudomonas protegens RBAN4 FABNJH_29540 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 40 85
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 43 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 44 85
  Pseudomonas aeruginosa MRSN321 DY961_RS21825 rsmD;go_function=16S 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 40 85
  Pseudomonas aeruginosa PA14 IKLFDK_23575 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 40 85
  Pseudomonas aeruginosa PUPa3 DQ20_RS37470 rsmD;go_function=16S 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 40 85
  Klebsiella michiganensis M5al BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 41 83
  Erwinia amylovora T8 OLJFJH_04385 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 41 83
  Pseudomonas sp. RS175 PFR28_04262 Ribosomal RNA small subunit methyltransferase D strong 40 85
  Rhodanobacter denitrificans MT42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 43 85
  Pseudomonas fluorescens FW300-N2C3 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 40 85
  Shewanella oneidensis MR-1 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) strong 38 83
  Pseudomonas stutzeri RCH2 Psest_0255 RNA methyltransferase, RsmD family no data 38 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) strong 39 85
  Shewanella loihica PV-4 Shew_3607 putative methyltransferase (RefSeq) strong 39 83
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS01535 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase cofit 41 83
  Vibrio cholerae E7946 ATCC 55056 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 36 87
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2153.1 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) sig. 45 70
o Klebsiella pneumoniae MKP103 KDGMDA_07265 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 38 90
o Klebsiella pneumoniae MRSN742743 KFA93_RS09880 rsmD;go_function=nucleic 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 38 90
  Rahnella sp. WP5 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase insig. 38 83
  Shewanella sp. ANA-3 Shewana3_3973 putative methyltransferase (RefSeq) strong 38 83
  Pantoea sp. MT58 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase sig. 40 83
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15240 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 42 85
  Pseudomonas sp. DMC3 GFF229 Ribosomal RNA small subunit methyltransferase D cofit 37 85
  Pseudomonas fluorescens FW300-N2E3 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 38 85
  Pseudomonas simiae WCS417 PS417_26825 16S rRNA methyltransferase no data 38 85
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14025 RsmD family RNA methyltransferase strong 33 99
  Castellaniella sp019104865 MT123 ABCV34_RS10145 RsmD family RNA methyltransferase insig. 43 69
  Pseudomonas sp. SVBP6 COO64_RS12895 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 37 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) no data 37 90
  Alteromonas macleodii MIT1002 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D sig. 34 88
  Marinobacter adhaerens HP15 HP15_3491 conserved hypothetical protein sig. 37 86
  Pseudomonas orientalis W4I3 QF045_RS01225 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 38 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05502 Ribosomal RNA small subunit methyltransferase D cofit 39 85
  Pseudomonas fluorescens SBW25 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 38 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 38 85
  Phocaeicola dorei CL03T12C01 ABI39_RS09675 RsmD family RNA methyltransferase insig. 32 99
  Pseudomonas sp. BP01 JOY50_RS20810 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 36 83
  Burkholderia phytofirmans PsJN BPHYT_RS02815 methyltransferase sig. 42 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 38 88
  Pseudomonas segetis P6 ACVTMO_RS21925 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 36 85
  Pseudomonas fluorescens GW456-L13 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) sig. 36 85
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07045 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 31 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 34 86
  Lysobacter sp. OAE881 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 42 80
  Bacteroides stercoris CC31F HMPREF1181_RS09245 RsmD family RNA methyltransferase insig. 33 98
  Dechlorosoma suillum PS Dsui_1027 RNA methyltransferase, RsmD family insig. 41 72
  Methylophilus sp. DMC18 GFF765 Ribosomal RNA small subunit methyltransferase D insig. 37 80
  Pseudomonas putida KT2440 PP_5114 putative adenine methyltransferase strong 34 83
  Paraburkholderia graminis OAS925 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase sig. 43 69
  Paraburkholderia sabiae LMG 24235 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 39 83
  Acinetobacter baumannii LAC-4 RR41_RS09020 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD no data 36 72
  Herbaspirillum seropedicae SmR1 HSERO_RS20695 methyltransferase sig. 37 76
  Ralstonia solanacearum PSI07 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 41 77
  Synechocystis sp000284455 PCC 6803 SGL_RS12970 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD strong 31 99
  Cupriavidus basilensis FW507-4G11 RR42_RS01990 methyltransferase insig. 40 68
  Ralstonia sp. UNC404CL21Col ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD sig. 39 75
  Ralstonia solanacearum GMI1000 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 40 77
  Bacteroides thetaiotaomicron VPI-5482 BT3979 putative methyltransferase (NCBI ptt file) sig. 31 94
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) cofit 40 72
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD insig. 35 89
  Ralstonia solanacearum UW163 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD no data 35 89
  Acinetobacter radioresistens SK82 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D cofit 35 72
  Synechococcus elongatus PCC 7942 Synpcc7942_1480 hypothetical protein strong 31 97
  Cellulophaga baltica 18 M666_RS11520 RsmD family RNA methyltransferase insig. 33 84
  Bacteroides ovatus ATCC 8483 BACOVA_04638 putative RNA methyltransferase, RsmD family cofit 30 94
  Acidovorax sp. GW101-3H11 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) no data 39 68
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04100 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD cofit 33 69
  Variovorax sp. OAS795 ABID97_RS23860 RsmD family RNA methyltransferase strong 40 68
  Variovorax sp. SCN45 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) insig. 38 68
  Methylophilus sp. DMC18 GFF2056 Release factor glutamine methyltransferase no data 31 60
  Acidovorax sp. GW101-3H11 Ac3H11_2173 Methyltransferase (EC 2.1.1.-) insig. 39 45
  Lysobacter sp. OAE881 ABIE51_RS05490 peptide chain release factor N(5)-glutamine methyltransferase no data 34 60
  Pseudomonas sp. SVBP6 COO64_RS03235 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 29 61
  Pseudomonas fluorescens FW300-N2C3 AO356_16500 protein-(glutamine-N5) methyltransferase, release factor-specific no data 29 89
  Variovorax sp. SCN45 GFF7188 Uncharacterized methyltransferase PA1407 insig. 36 44
  Pseudomonas stutzeri RCH2 Psest_1949 Predicted N6-adenine-specific DNA methylase insig. 39 27
  Pseudomonas syringae pv. syringae B728a Psyr_2108 23S rRNA m(2)G-2445 methyltransferase insig. 37 27
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2108 23S rRNA m(2)G-2445 methyltransferase insig. 37 27
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3418 Methyltransferase (EC 2.1.1.-) insig. 35 46
  Pseudomonas sp. DMC3 GFF5254 Ribosomal RNA large subunit methyltransferase K/L cofit 37 27
  Pseudomonas sp. RS175 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L insig. 37 27
  Pseudomonas sp. SVBP6 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 37 27
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) sig. 37 27
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 37 27
  Pseudomonas fluorescens FW300-N2E3 AO353_00775 50S rRNA methyltransferase insig. 37 27
  Pseudomonas fluorescens FW300-N2C3 AO356_02605 50S rRNA methyltransferase insig. 37 27
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) insig. 37 27
  Pseudomonas fluorescens SBW25 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 37 27
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 37 27
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L cofit 37 27
  Pseudomonas orientalis W4I3 QF045_RS22735 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL cofit 37 27
  Pseudomonas simiae WCS417 PS417_20930 50S rRNA methyltransferase strong 37 27
  Pseudomonas protegens RBAN4 FABNJH_09755 rlmL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL insig. 37 27
  Shewanella amazonensis SB2B Sama_1491 hypothetical protein (RefSeq) insig. 33 45
  Pseudomonas sp. BP01 JOY50_RS19585 prmC peptide chain release factor N(5)-glutamine methyltransferase no data 32 61
  Pseudomonas sp. RS175 PFR28_03654 Release factor glutamine methyltransferase no data 30 61
  Pseudomonas fluorescens SBW25 PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase no data 35 45
  Pseudomonas fluorescens SBW25-INTG PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase no data 35 45
  Ralstonia solanacearum GMI1000 RS_RS06960 50S ribosomal protein L3 N(5)-glutamine methyltransferase strong 31 58
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2920 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 no data 29 61