Homologs of Dsui_3128 from Dechlorosoma suillum PS

ribonuclease R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

202 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 100 100
o Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 58 99
o Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 53 97
o Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 57 85
o Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 53 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 52 97
o Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 52 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 52 97
o Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 55 86
o Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 50 97
o Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 51 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 53 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 52 94
o Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 51 96
o Pseudomonas protegens RBAN4 FABNJH_02985 rnr ribonuclease R insig. 49 98
o Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 49 98
o Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 49 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 50 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 49 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 50 98
o Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 50 98
o Pseudomonas segetis P6 ACVTMO_RS20555 rnr ribonuclease R strong 52 92
o Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 50 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 50 98
o Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 49 98
o Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 49 98
o Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 53 87
o Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 53 87
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 53 87
o Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 53 87
o Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 53 90
o Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 53 86
o Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 51 88
o Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 48 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 48 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS51590 rnr;go_function=RNA ribonuclease R strong 53 90
o Pseudomonas aeruginosa MRSN321 DY961_RS10465 rnr;go_function=RNA ribonuclease R strong 53 90
o Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 49 99
o Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 49 96
o Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 52 85
o Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 49 96
o Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 51 87
o Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 51 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 49 93
o Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 48 89
o Klebsiella pneumoniae MRSN742743 KFA93_RS21025 rnr;go_function=RNA ribonuclease R strong 48 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 49 87
o Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 49 87
o Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 49 87
o Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 49 87
o Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 49 87
o Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 49 87
o Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 49 87
o Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 49 87
o Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 46 96
o Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 49 87
o Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 49 87
o Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R sig. 49 87
o Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 49 87
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 49 87
o Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 48 89
o Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 48 90
o Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 49 87
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 53 77
o Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 49 87
o Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 54 80
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 49 87
o Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 49 87
o Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 47 97
  Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 52 80
o Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 50 86
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 53 77
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS02640 rnr ribonuclease R cofit 47 87
o Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 45 91
o Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 47 91
o Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 48 92
o Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 47 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 50 82
o Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 47 91
o Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 48 89
o Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 48 87
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 48 87
o Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 49 87
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 49 87
o Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 48 87
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 50 86
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 47 88
o Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 44 86
o Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 41 92
o Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 39 87
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 37 93
  Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 35 80
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 35 80
  Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 36 84
  Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 36 91
  Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 36 88
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 34 80
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 32 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 34 75
  Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 36 85
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 38 77
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 34 75
  Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 34 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 34 79
  Agrobacterium fabrum C58 Atu1303 exoribonuclease strong 34 86
  Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 37 81
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 34 75
  Rhodopseudomonas palustris CGA009 TX73_016160 ribonuclease R insig. 38 72
  Xanthobacter sp. DMC5 GFF1081 Ribonuclease R insig. 36 78
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 32 81
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 31 83
  Fusobacterium nucleatum SB010 HUW76_06085 ribonuclease R cofit 33 83
  Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 33 88
  Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 34 85
  Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 34 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3266 ribonuclease R strong 39 64
  Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 31 83
  Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 36 72
  Sphingobium sp. HT1-2 GFF3533 '3'-to-5' exoribonuclease RNase R' transl_table=11 cofit 36 72
  Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 35 81
  Marinobacter adhaerens HP15 HP15_3552 exoribonuclease R strong 31 77
  Pectobacterium carotovorum WPP14 HER17_RS09430 exoribonuclease II strong 30 79
  Synechocystis sp000284455 PCC 6803 SGL_RS05500 ribonuclease R strong 27 80
  Serratia liquefaciens MT49 IAI46_13870 exoribonuclease II insig. 31 72
  Dickeya dadantii 3937 DDA3937_RS12490 exoribonuclease II strong 31 69
  Rahnella sp. WP5 EX31_RS07155 exoribonuclease II insig. 30 72
  Erwinia amylovora T8 OLJFJH_13600 exoribonuclease II cofit 29 72
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS09455 exoribonuclease II cofit 31 69
  Dickeya dianthicola ME23 DZA65_RS12995 exoribonuclease II sig. 30 69
  Dickeya dianthicola 67-19 HGI48_RS12545 exoribonuclease II cofit 30 69
  Pantoea sp. MT58 IAI47_09320 exoribonuclease II sig. 30 69
  Enterobacter asburiae PDN3 EX28DRAFT_0961 exoribonuclease II cofit 29 69
  Escherichia coli ECRC62 BNILDI_18335 rnb exoribonuclease II cofit 30 69
  Escherichia fergusonii Becca EFB2_02638 Exoribonuclease 2 sig. 30 69
  Escherichia coli Nissle 1917 ECOLIN_RS07765 exoribonuclease II no data 30 69
  Vibrio cholerae E7946 ATCC 55056 CSW01_18190 exoribonuclease 2 insig. 28 72
  Escherichia coli ECOR27 NOLOHH_20185 rnb exoribonuclease II insig. 30 69
  Escherichia coli ECOR38 HEPCGN_25680 rnb exoribonuclease II strong 30 69
  Escherichia coli BW25113 b1286 rnb exoribonuclease II (NCBI) strong 30 69
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02395 Exoribonuclease 2 sig. 30 69
  Escherichia coli ECRC100 OKFHMN_02520 rnb exoribonuclease II cofit 30 69
  Escherichia coli ECRC101 MCAODC_15750 rnb exoribonuclease II strong 30 69
  Escherichia coli ECRC102 NIAGMN_26690 rnb exoribonuclease II sig. 30 69
  Escherichia coli ECRC98 JDDGAC_05065 rnb exoribonuclease II sig. 30 69
  Escherichia coli ECRC99 KEDOAH_26245 rnb exoribonuclease II no data 30 69
  Klebsiella michiganensis M5al BWI76_RS11990 exoribonuclease II sig. 30 72
  Enterobacter sp. TBS_079 MPMX20_02487 Exoribonuclease 2 strong 29 69
  Escherichia coli BL21 ECD_01263 ribonuclease II cofit 30 69
  Klebsiella pneumoniae MKP103 KDGMDA_19680 exoribonuclease II strong 29 69
  Klebsiella pneumoniae MRSN742743 KFA93_RS20170 exoribonuclease II insig. 29 69
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23355 exoribonuclease II no data 29 72
  Erwinia tracheiphila SCR3 LU632_RS12255 exoribonuclease II no data 29 72
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2698 Exoribonuclease II (EC 3.1.13.1) strong 30 69
  Synechococcus elongatus PCC 7942 Synpcc7942_1911 zam Cold shock protein strong 25 80
  Variovorax sp. SCN45 GFF7962 3'-to-5' exoribonuclease RNase R no data 46 14
  Synechococcus elongatus PCC 7942 Synpcc7942_1124 rnb Exoribonuclease II strong 26 58
  Rhodanobacter sp. FW510-T8 OKGIIK_02040 Ribonuclease II insig. 27 46
  Synechocystis sp000284455 PCC 6803 SGL_RS05100 ribonuclease R no data 25 46
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16070 RNB domain-containing ribonuclease insig. 26 46
  Desulfovibrio vulgaris Hildenborough JW710 DVU3207 RNB-like family protein (TIGR) strong 27 38
  Rhodanobacter denitrificans MT42 LRK55_RS12180 RNB domain-containing ribonuclease insig. 27 38
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12440 RNB domain-containing ribonuclease insig. 27 38
  Desulfovibrio vulgaris Miyazaki F DvMF_1943 ribonuclease II (RefSeq) no data 24 40
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1618 Exoribonuclease R insig. 36 15
  Synechococcus elongatus PCC 7942 Synpcc7942_1546 putative ribonuclease II strong 24 45
  Dechlorosoma suillum PS Dsui_0446 exoribonuclease R no data 26 37
  Methanococcus maripaludis S2 MMP_RS02335 DNA-directed RNA polymerase no data 30 13
  Methylophilus sp. DMC18 GFF620 Exoribonuclease 2 cofit 25 38
  Methanococcus maripaludis JJ MMJJ_RS02940 DNA-directed RNA polymerase no data 30 13
  Phaeobacter inhibens DSM 17395 PGA1_c09850 S1 domain-containing protein insig. 34 18
  Caulobacter crescentus NA1000 CCNA_03702 SSU ribosomal protein S1P strong 30 14
  Caulobacter crescentus NA1000 Δfur CCNA_03702 SSU ribosomal protein S1P cofit 30 14
  Shewanella loihica PV-4 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) sig. 30 18
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10900 30S ribosomal protein S1 no data 30 12
  Pantoea sp. MT58 IAI47_01805 RNA-binding transcriptional accessory protein insig. 28 18
  Acidovorax sp. GW101-3H11 Ac3H11_4042 Exoribonuclease II (EC 3.1.13.1) no data 29 19
  Alteromonas macleodii MIT1002 MIT1002_04012 hypothetical protein insig. 28 19
  Sinorhizobium meliloti 1021 SMc02644 hypothetical protein insig. 35 15
  Erwinia amylovora T8 OLJFJH_04170 RNA-binding transcriptional accessory protein cofit 29 18
  Pseudomonas segetis P6 ACVTMO_RS14355 rpsA 30S ribosomal protein S1 no data 32 11
  Pseudomonas sp. S08-1 OH686_20890 ribosomal protein S1 no data 31 10
  Pseudomonas fluorescens SBW25 PFLU_RS08115 30S ribosomal protein S1 no data 31 10
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08115 30S ribosomal protein S1 no data 31 10
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_346 SSU ribosomal protein S1p no data 31 10
  Pseudomonas fluorescens FW300-N2C3 AO356_03445 30S ribosomal protein S1 no data 31 10
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2516 SSU ribosomal protein S1p no data 31 10
  Pseudomonas stutzeri RCH2 Psest_1988 ribosomal protein S1 no data 34 10
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01765 30S ribosomal protein S1 no data 31 10
  Pseudomonas protegens RBAN4 FABNJH_22280 rpsA 30S ribosomal protein S1 no data 31 10
  Pseudomonas sp. RS175 PFR28_00911 30S ribosomal protein S1 no data 31 10
  Pseudomonas simiae WCS417 PS417_08145 30S ribosomal protein S1 no data 31 10
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2180 SSU ribosomal protein S1p no data 31 10
  Pseudomonas fluorescens FW300-N2E3 AO353_02050 30S ribosomal protein S1 no data 31 10
  Pseudomonas sp. DMC3 GFF4673 30S ribosomal protein S1 no data 31 10
  Pseudomonas orientalis W4I3 QF045_RS10865 30S ribosomal protein S1 no data 31 10
  Pseudomonas sp. SVBP6 COO64_RS06730 rpsA 30S ribosomal protein S1 no data 31 10
  Pseudomonas syringae pv. syringae B728a Psyr_3642 SSU ribosomal protein S1P no data 31 10
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3642 SSU ribosomal protein S1P no data 31 10
  Acidovorax sp. GW101-3H11 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) no data 30 11
  Pseudomonas aeruginosa MRSN321 DY961_RS01130 rpsA;go_component=ribosome|0005840||IEA;go_function=RNA 30S ribosomal protein S1 no data 31 10
  Pseudomonas aeruginosa PA14 IKLFDK_16070 30S ribosomal protein S1 no data 31 10
  Pseudomonas aeruginosa PUPa3 DQ20_RS34415 rpsA;go_component=ribosome|0005840||IEA;go_function=RNA 30S ribosomal protein S1 no data 31 10