Homologs of CSW01_10335 from Vibrio cholerae E7946 ATCC 55056

RNA polymerase sigma factor FliA
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_10335 RNA polymerase sigma factor FliA cofit 100 100
o Shewanella oneidensis MR-1 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) strong 61 99
o Shewanella sp. ANA-3 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) strong 61 99
o Alteromonas macleodii MIT1002 MIT1002_01103 Sigma-F factor sig. 58 98
o Shewanella loihica PV-4 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) strong 60 99
o Shewanella amazonensis SB2B Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) strong 57 99
o Pseudomonas sp. S08-1 OH686_02730 RNA polymerase sigma factor for flagellar operon cofit 58 96
o Pseudomonas aeruginosa MRSN321 DY961_RS05635 fliA;inference=COORDINATES RNA polymerase sigma factor FliA strong 57 96
o Pseudomonas aeruginosa PUPa3 DQ20_RS47155 fliA;inference=COORDINATES RNA polymerase sigma factor FliA strong 57 96
o Pseudomonas aeruginosa PA14 IKLFDK_06920 flagellar biosynthesis sigma factor FliA strong 57 96
o Marinobacter adhaerens HP15 HP15_2302 flagellar biosynthesis sigma factor FliA strong 57 96
o Pseudomonas stutzeri RCH2 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family strong 54 98
o Pseudomonas segetis P6 ACVTMO_RS15490 fliA RNA polymerase sigma factor FliA strong 58 92
o Pseudomonas syringae pv. syringae B728a Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 57 93
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG cofit 57 93
o Pseudomonas putida KT2440 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons strong 56 93
o Pseudomonas orientalis W4I3 QF045_RS21835 RNA polymerase sigma factor FliA insig. 56 93
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04138 RNA polymerase sigma factor FliA cofit 56 93
o Pseudomonas sp. BP01 JOY50_RS00585 fliA RNA polymerase sigma factor FliA cofit 56 93
o Pseudomonas sp. RS175 PFR28_00852 RNA polymerase sigma factor FliA strong 56 93
o Pseudomonas fluorescens SBW25 PFLU_RS21660 RNA polymerase sigma factor FliA cofit 56 93
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21660 RNA polymerase sigma factor FliA strong 56 93
o Pseudomonas simiae WCS417 PS417_19695 flagellar biosynthesis sigma factor strong 56 93
o Pseudomonas sp. DMC3 GFF2472 RNA polymerase sigma factor FliA cofit 56 93
o Pseudomonas fluorescens FW300-N2C3 AO356_03730 flagellar biosynthesis sigma factor strong 56 93
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon strong 56 93
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon insig. 56 93
o Pseudomonas fluorescens FW300-N2E3 AO353_18785 flagellar biosynthesis sigma factor strong 56 93
o Pseudomonas sp. SVBP6 COO64_RS25625 fliA RNA polymerase sigma factor FliA cofit 56 93
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon insig. 55 93
o Rhodanobacter sp. FW510-T8 OKGIIK_02830 fliA RNA polymerase sigma factor FliA cofit 51 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS14995 RNA polymerase sigma factor FliA insig. 51 98
o Rhodanobacter denitrificans MT42 LRK55_RS13320 RNA polymerase sigma factor FliA cofit 50 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13580 RNA polymerase sigma factor FliA strong 50 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS20265 RNA polymerase sigma factor FliA insig. 51 93
o Lysobacter sp. OAE881 ABIE51_RS16865 RNA polymerase sigma factor FliA strong 50 91
o Herbaspirillum seropedicae SmR1 HSERO_RS10160 flagellar biosynthesis sigma factor strong 45 91
o Dechlorosoma suillum PS Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family cofit 46 96
o Methylophilus sp. DMC18 GFF1338 RNA polymerase sigma factor FliA cofit 43 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS28940 RNA polymerase sigma factor FliA strong 46 96
o Paraburkholderia graminis OAS925 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA strong 46 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 46 95
o Dickeya dadantii 3937 DDA3937_RS13300 RNA polymerase sigma factor FliA strong 47 95
o Burkholderia phytofirmans PsJN BPHYT_RS18925 RNA polymerase sigma70 strong 45 95
o Rahnella sp. WP5 EX31_RS09450 RNA polymerase sigma factor FliA cofit 47 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1428 RNA polymerase sigma factor for flagellar operon insig. 44 95
o Serratia liquefaciens MT49 IAI46_15785 RNA polymerase sigma factor FliA cofit 46 95
o Dickeya dianthicola 67-19 HGI48_RS13350 RNA polymerase sigma factor FliA cofit 46 95
o Dickeya dianthicola ME23 DZA65_RS13835 RNA polymerase sigma factor FliA strong 46 95
o Enterobacter asburiae PDN3 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family cofit 47 95
o Enterobacter sp. TBS_079 MPMX20_02847 RNA polymerase sigma factor FliA strong 47 95
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1690 RNA polymerase sigma factor for flagellar operon strong 48 95
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_21960 fliA RNA polymerase sigma factor FliA cofit 46 95
o Pectobacterium carotovorum WPP14 HER17_RS08355 RNA polymerase sigma factor FliA cofit 48 95
o Escherichia fergusonii Becca EFB2_02023 RNA polymerase sigma factor FliA insig. 47 95
o Ralstonia solanacearum GMI1000 RS_RS23830 RNA polymerase sigma factor FliA insig. 45 89
o Escherichia coli ECOR27 NOLOHH_16400 fliA RNA polymerase sigma factor FliA strong 47 95
o Escherichia coli ECOR38 HEPCGN_04135 fliA RNA polymerase sigma factor FliA insig. 47 95
o Escherichia coli ECRC100 OKFHMN_25780 fliA RNA polymerase sigma factor FliA cofit 47 95
o Escherichia coli ECRC101 MCAODC_19610 fliA RNA polymerase sigma factor FliA insig. 47 95
o Escherichia coli ECRC102 NIAGMN_02270 fliA RNA polymerase sigma factor FliA insig. 47 95
o Escherichia coli ECRC62 BNILDI_15190 fliA RNA polymerase sigma factor FliA cofit 47 95
o Escherichia coli ECRC98 JDDGAC_00370 fliA RNA polymerase sigma factor FliA insig. 47 95
o Escherichia coli ECRC99 KEDOAH_02310 fliA RNA polymerase sigma factor FliA no data 47 95
o Erwinia tracheiphila SCR3 LU632_RS13785 RNA polymerase sigma factor FliA insig. 46 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS18040 RNA polymerase sigma factor FliA strong 45 89
o Escherichia coli Nissle 1917 ECOLIN_RS10975 RNA polymerase sigma factor FliA insig. 47 95
o Escherichia coli BW25113 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) sig. 47 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS17485 RNA polymerase sigma factor FliA insig. 45 89
o Ralstonia solanacearum UW163 UW163_RS21665 RNA polymerase sigma factor FliA insig. 45 89
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01807 RNA polymerase sigma factor FliA insig. 47 95
o Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 42 95
o Cupriavidus basilensis FW507-4G11 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor insig. 47 88
o Pantoea sp. MT58 IAI47_08160 RNA polymerase sigma factor FliA cofit 45 95
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS02055 RNA polymerase sigma factor FliA cofit 45 95
o Ralstonia solanacearum PSI07 RPSI07_RS06165 RNA polymerase sigma factor FliA insig. 44 91
o Variovorax sp. SCN45 GFF5774 RNA polymerase sigma factor for flagellar operon insig. 44 95
o Erwinia amylovora T8 OLJFJH_12555 RNA polymerase sigma factor FliA sig. 46 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon cofit 47 95
o Castellaniella sp019104865 MT123 ABCV34_RS05605 RNA polymerase sigma factor FliA sig. 44 93
  Erwinia amylovora T8 OLJFJH_10105 RNA polymerase sigma factor FliA insig. 36 94
o Sphingobium sp. HT1-2 GFF3722 RNA polymerase sigma factor for flagellar operon cofit 38 97
o Desulfovibrio vulgaris Miyazaki F DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) strong 39 91
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family cofit 37 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4065 RNA polymerase sigma factor for flagellar operon insig. 36 92
o Desulfovibrio vulgaris Hildenborough JW710 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) strong 36 87
  Pseudomonas stutzeri RCH2 Psest_4160 RNA polymerase sigma factor, FliA/WhiG family insig. 34 94
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_14635 RNA polymerase sigma factor FliA no data 35 85
  Erwinia tracheiphila SCR3 LU632_RS20475 FliA/WhiG family RNA polymerase sigma factor no data 35 85
  Cellulophaga baltica 18 M666_RS16155 RNA polymerase sigma factor RpoD/SigA insig. 31 79
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 31 77
  Synechocystis sp000284455 PCC 6803 SGL_RS17245 RNA polymerase sigma factor RpoD no data 30 86
  Synechococcus elongatus PCC 7942 Synpcc7942_0649 rpoD1 RNA polymerase sigma factor RpoD no data 30 86
  Mycobacterium tuberculosis H37Rv Rv3286c Alternative RNA polymerase sigma factor SigF insig. 30 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 30 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 30 77
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15895 RNA polymerase sigma factor RpoD/SigA no data 30 77
  Cellulophaga baltica 18 M666_RS08520 sigma-70 family RNA polymerase sigma factor no data 29 78
  Cellulophaga baltica 18 M666_RS16995 RNA polymerase sigma factor RpoD/SigA strong 28 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA no data 29 77