Homologs of Atu4171 from Agrobacterium fabrum C58

cold-shock dead-box protein A
SEED: FIG003033: Helicase domain protein
KEGG: ATP-dependent RNA helicase DeaD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Agrobacterium fabrum C58 Atu4171 cold-shock dead-box protein A strong 100 100
o Sinorhizobium meliloti 1021 SMc01090 ATP-dependent RNA helicase insig. 68 99
o Rhizobium sp. OAE497 ABIE40_RS09590 DEAD/DEAH box helicase insig. 66 98
o Dinoroseobacter shibae DFL-12 Dshi_0850 DEAD/DEAH box helicase domain protein (RefSeq) insig. 57 97
o Phaeobacter inhibens DSM 17395 PGA1_c09790 cold-shock DEAD box protein A insig. 54 99
o Rhodopseudomonas palustris CGA009 TX73_020730 DEAD/DEAH box helicase insig. 51 98
o Bosea sp. OAE506 ABIE41_RS12660 DEAD/DEAH box helicase insig. 51 98
o Magnetospirillum magneticum AMB-1 AMB_RS20530 ATP-dependent helicase insig. 53 94
o Sphingobium sp. HT1-2 GFF1881 ATP-dependent RNA helicase Atu4171 no data 50 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10540 DEAD/DEAH box helicase insig. 49 97
  Caulobacter crescentus NA1000 CCNA_01546 DEAD-box RNA helicase-like protein strong 53 94
  Caulobacter crescentus NA1000 Δfur CCNA_01546 DEAD-box RNA helicase-like protein cofit 53 94
o Xanthobacter sp. DMC5 GFF2793 ATP-dependent RNA helicase DeaD insig. 50 98
o Rhodospirillum rubrum S1H Rru_A1386 DEAD/DEAH box helicase (NCBI) insig. 53 84
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3407 Superfamily II DNA and RNA helicases insig. 47 100
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05910 RNA helicase strong 33 85
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11910 DEAD/DEAH box helicase strong 32 85
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09085 DEAD/DEAH family ATP-dependent RNA helicase cofit 32 91
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13975 DEAD/DEAH family ATP-dependent RNA helicase no data 34 85
  Pantoea sp. MT58 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase strong 32 92
  Rahnella sp. WP5 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase insig. 32 87
  Klebsiella michiganensis M5al BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase no data 33 83
  Erwinia tracheiphila SCR3 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase no data 33 85
  Pectobacterium carotovorum WPP14 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase insig. 33 87
  Kangiella aquimarina DSM 16071 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) insig. 37 66
  Alteromonas macleodii MIT1002 MIT1002_00666 Cold-shock DEAD box protein A strong 33 82
  Dickeya dianthicola 67-19 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase insig. 33 87
  Dickeya dianthicola ME23 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase no data 33 87
  Shewanella sp. ANA-3 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 30 98
  Serratia liquefaciens MT49 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase sig. 32 87
  Dickeya dadantii 3937 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase insig. 31 98
  Phocaeicola dorei CL03T12C01 ABI39_RS04950 DEAD/DEAH box helicase strong 32 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3056 Superfamily II DNA and RNA helicases no data 37 69
  Shewanella oneidensis MR-1 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) strong 30 98
  Shewanella loihica PV-4 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 35 75
  Erwinia amylovora T8 OLJFJH_07275 DEAD/DEAH family ATP-dependent RNA helicase strong 32 85
  Pseudomonas sp. S08-1 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) cofit 31 87
  Fusobacterium nucleatum SB010 HUW76_10100 DEAD/DEAH box helicase strong 30 85
  Pseudomonas sp. RS175 PFR28_00980 ATP-dependent RNA helicase DeaD insig. 32 87
  Klebsiella pneumoniae MKP103 KDGMDA_05860 DEAD/DEAH family ATP-dependent RNA helicase strong 33 83
  Pseudomonas putida KT2440 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD no data 32 87
  Dechlorosoma suillum PS Dsui_1351 DNA/RNA helicase, superfamily II strong 31 87
  Bacteroides thetaiotaomicron VPI-5482 BT3303 ATP-dependent RNA helicase (NCBI ptt file) sig. 30 99
  Shewanella amazonensis SB2B Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) strong 34 68
  Pseudomonas syringae pv. syringae B728a Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 32 87
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 32 87
  Pseudomonas simiae WCS417 PS417_08540 RNA helicase strong 32 87
  Pseudomonas stutzeri RCH2 Psest_1804 Superfamily II DNA and RNA helicases strong 32 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 31 87
  Bacteroides ovatus ATCC 8483 BACOVA_00904 DEAD/DEAH box helicase insig. 30 94
  Pseudomonas fluorescens SBW25 PFLU_RS08490 DEAD/DEAH box helicase no data 32 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08490 DEAD/DEAH box helicase strong 32 87
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 32 87
  Pseudomonas orientalis W4I3 QF045_RS11260 DEAD/DEAH box helicase strong 32 87
  Pseudomonas fluorescens FW300-N2E3 AO353_19130 RNA helicase no data 32 87
  Pseudomonas sp. BP01 JOY50_RS17005 DEAD/DEAH box helicase insig. 32 87
  Methanococcus maripaludis JJ MMJJ_RS02855 DEAD/DEAH box helicase strong 33 83
  Methanococcus maripaludis S2 MMP_RS02420 DEAD/DEAH box helicase no data 33 83
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) strong 33 83
  Pseudomonas fluorescens FW300-N2C3 AO356_03110 RNA helicase no data 32 87
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01840 ATP-dependent RNA helicase DeaD no data 32 87
  Pseudomonas sp. DMC3 GFF4601 ATP-dependent RNA helicase DeaD no data 31 87
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 29 94
  Escherichia coli ECOR27 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD sig. 33 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 32 87
  Escherichia coli ECRC99 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD no data 33 83
  Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase sig. 29 88
  Escherichia coli BL21 ECD_03029 ATP-dependent RNA helicase sig. 33 83
  Escherichia fergusonii Becca EFB2_00661 ATP-dependent RNA helicase DeaD sig. 33 83
  Escherichia coli ECRC100 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD cofit 33 83
  Escherichia coli ECRC101 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD strong 33 83
  Escherichia coli ECRC102 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD cofit 33 83
  Escherichia coli ECRC62 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD cofit 33 83
  Escherichia coli ECRC98 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD strong 33 83
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00538 ATP-dependent RNA helicase DeaD sig. 33 83
  Escherichia coli Nissle 1917 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD sig. 33 83
  Escherichia coli BW25113 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) strong 33 83
  Bacteroides stercoris CC31F HMPREF1181_RS02175 DEAD/DEAH box helicase sig. 35 65
  Enterobacter asburiae PDN3 EX28DRAFT_3211 Superfamily II DNA and RNA helicases no data 32 87
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08990 DEAD/DEAH box helicase strong 34 67
  Escherichia coli ECOR38 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD strong 33 83
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS07300 DEAD/DEAH box helicase insig. 29 89
  Marinobacter adhaerens HP15 HP15_1329 DEAD/DEAH box helicase domain protein sig. 40 59
  Enterobacter sp. TBS_079 MPMX20_04066 ATP-dependent RNA helicase DeaD insig. 32 87
  Desulfovibrio vulgaris Miyazaki F DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) no data 32 86
  Pseudomonas fluorescens FW300-N2E3 AO353_07850 ATP-dependent RNA helicase strong 36 64
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02650 DEAD/DEAH box helicase insig. 29 87
  Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 29 87
  Castellaniella sp019104865 MT123 ABCV34_RS13580 DEAD/DEAH box helicase sig. 40 58
  Variovorax sp. OAS795 ABID97_RS02340 ATP-dependent RNA helicase DbpA insig. 41 55
  Cupriavidus basilensis FW507-4G11 RR42_RS00295 DEAD/DEAH box helicase sig. 42 55
  Pseudomonas fluorescens FW300-N2C3 AO356_13770 ATP-dependent RNA helicase strong 37 60
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA strong 37 60
  Lysobacter sp. OAE881 ABIE51_RS12265 DEAD/DEAH box helicase insig. 36 67
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15600 ATP-dependent RNA helicase no data 30 84
  Variovorax sp. SCN45 GFF7138 ATP-dependent 23S rRNA helicase DbpA insig. 42 55
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA strong 37 60
  Vibrio cholerae E7946 ATCC 55056 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase insig. 33 82
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5449 ATP-dependent 23S rRNA helicase DbpA insig. 41 55
  Pseudomonas segetis P6 ACVTMO_RS03355 dbpA ATP-dependent RNA helicase DbpA insig. 40 58