Homologs of rpmE from Shewanella loihica PV-4

rpmE: 50S ribosomal protein L31 (RefSeq)
SEED: LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent
KEGG: large subunit ribosomal protein L31

172 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_0381 rpmE 50S ribosomal protein L31 (RefSeq) no data 100 100
o Shewanella oneidensis MR-1 SO4120 rpmE ribosomal protein L31 (NCBI ptt file) no data 94 100
o Shewanella amazonensis SB2B Sama_0447 rpmE 50S ribosomal protein L31 (RefSeq) no data 93 100
o Shewanella sp. ANA-3 Shewana3_3670 rpmE 50S ribosomal protein L31 (RefSeq) no data 94 100
o Dickeya dadantii 3937 DDA3937_RS00940 50S ribosomal protein L31 no data 70 100
o Pseudomonas stutzeri RCH2 Psest_3723 ribosomal protein L31 no data 70 100
o Alteromonas macleodii MIT1002 MIT1002_03666 50S ribosomal protein L31 no data 67 100
o Dickeya dianthicola 67-19 HGI48_RS20435 50S ribosomal protein L31 no data 69 100
o Dickeya dianthicola ME23 DZA65_RS21480 50S ribosomal protein L31 no data 69 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2318 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent no data 69 100
o Pseudomonas sp. S08-1 OH686_10075 ribosomal protein L31 no data 66 100
o Pseudomonas aeruginosa MRSN321 DY961_RS11065 rpmE;go_component=ribosome|0005840||IEA;go_function=structural 50S ribosomal protein L31 no data 69 97
o Pseudomonas aeruginosa PA14 IKLFDK_28280 50S ribosomal protein L31 no data 69 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS51010 rpmE;go_component=ribosome|0005840||IEA;go_function=structural 50S ribosomal protein L31 no data 69 97
o Pseudomonas segetis P6 ACVTMO_RS21045 rpmE 50S ribosomal protein L31 no data 67 100
o Rahnella sp. WP5 EX31_RS25365 50S ribosomal protein L31 strong 67 100
o Serratia liquefaciens MT49 IAI46_24550 50S ribosomal protein L31 no data 66 100
o Marinobacter adhaerens HP15 HP15_471 ribosomal protein L31 no data 72 93
o Klebsiella pneumoniae MKP103 KDGMDA_09285 50S ribosomal protein L31 no data 66 100
o Klebsiella pneumoniae MRSN742743 KFA93_RS22760 rpmE;go_component=ribosome|0005840||IEA;go_function=structural 50S ribosomal protein L31 no data 66 100
o Pectobacterium carotovorum WPP14 HER17_RS00875 50S ribosomal protein L31 no data 64 100
o Dechlorosoma suillum PS Dsui_3219 ribosomal protein L31 no data 62 99
o Pseudomonas protegens RBAN4 FABNJH_02300 rpmE 50S ribosomal protein L31 no data 66 97
o Kangiella aquimarina DSM 16071 B158DRAFT_0756 LSU ribosomal protein L31P no data 69 93
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13010 rpmE 50S ribosomal protein L31 no data 63 100
o Erwinia tracheiphila SCR3 LU632_RS19650 rpmE 50S ribosomal protein L31 no data 63 100
o Erwinia amylovora T8 OLJFJH_06085 50S ribosomal protein L31 no data 63 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_13535 50S ribosomal protein L31 no data 62 100
o Klebsiella michiganensis M5al BWI76_RS00775 50S ribosomal protein L31 no data 63 97
o Pseudomonas syringae pv. syringae B728a Psyr_0399 LSU ribosomal protein L31P no data 65 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0399 LSU ribosomal protein L31P no data 65 97
o Escherichia coli BL21 ECD_03821 50S ribosomal subunit protein L31 no data 61 100
o Escherichia fergusonii Becca EFB2_04682 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECOR27 NOLOHH_05860 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECOR38 HEPCGN_12360 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC100 OKFHMN_13715 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC101 MCAODC_04215 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC102 NIAGMN_11470 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC62 BNILDI_05670 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC98 JDDGAC_17340 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli ECRC99 KEDOAH_14445 rpmE 50S ribosomal protein L31 no data 61 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04115 50S ribosomal protein L31 no data 61 100
  Escherichia coli Nissle 1917 ECOLIN_RS22660 50S ribosomal protein L31 no data 61 100
  Escherichia coli Nissle 1917 ECOLIN_RS22685 50S ribosomal protein L31 no data 61 100
  Escherichia coli Nissle 1917 ECOLIN_RS22710 50S ribosomal protein L31 no data 61 100
o Escherichia coli BW25113 b3936 rpmE 50S ribosomal subunit protein L31 (NCBI) no data 61 100
o Enterobacter asburiae PDN3 EX28DRAFT_4409 ribosomal protein L31 no data 61 100
o Enterobacter sp. TBS_079 MPMX20_04533 50S ribosomal protein L31 no data 61 100
  Pseudomonas putida KT2440 PP_5087 ribosomal protein L31 no data 60 100
o Pseudomonas sp. BP01 JOY50_RS09260 rpmE 50S ribosomal protein L31 no data 60 100
o Acinetobacter radioresistens SK82 MPMX26_01063 50S ribosomal protein L31 no data 60 99
o Pseudomonas fluorescens FW300-N2C3 AO356_09435 50S ribosomal protein L31 no data 61 99
o Acinetobacter baumannii LAC-4 RR41_RS05380 50S ribosomal protein L31 no data 59 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3765 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent no data 61 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_285 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent no data 57 100
o Pantoea sp. MT58 IAI47_00870 50S ribosomal protein L31 insig. 60 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS00865 rpmE 50S ribosomal protein L31 no data 60 100
o Pseudomonas sp. SVBP6 COO64_RS13035 rpmE 50S ribosomal protein L31 no data 59 100
o Methylophilus sp. DMC18 GFF2443 50S ribosomal protein L31 no data 58 94
o Pseudomonas sp. RS175 PFR28_05003 50S ribosomal protein L31 no data 59 97
o Pseudomonas sp. DMC3 GFF3090 50S ribosomal protein L31 no data 59 97
o Pseudomonas fluorescens FW300-N2E3 AO353_12450 50S ribosomal protein L31 no data 57 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1547 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent no data 56 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00621 50S ribosomal protein L31 no data 57 100
o Pseudomonas fluorescens SBW25 PFLU_RS01985 50S ribosomal protein L31 no data 57 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS01985 50S ribosomal protein L31 no data 57 100
o Pseudomonas orientalis W4I3 QF045_RS05000 50S ribosomal protein L31 insig. 57 100
o Pseudomonas simiae WCS417 PS417_01940 50S ribosomal protein L31 no data 56 100
o Bifidobacterium breve UCC2003 BBR_RS18090 50S ribosomal protein L31 no data 55 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU2912 rpmE ribosomal protein L31 (TIGR) no data 46 100
o Mycobacterium tuberculosis H37Rv Rv1298 50S ribosomal protein L31 RpmE no data 52 93
o Azospirillum brasilense Sp245 AZOBR_RS11315 50S ribosomal protein L31 no data 52 100
o Azospirillum sp. SherDot2 MPMX19_01924 50S ribosomal protein L31 no data 52 100
o Desulfovibrio vulgaris Miyazaki F DvMF_1442 rpmE 50S ribosomal protein L31 (RefSeq) no data 43 99
o Synechococcus elongatus PCC 7942 Synpcc7942_2204 rpmE 50S ribosomal protein L31 no data 48 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS22325 type B 50S ribosomal protein L31 no data 45 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00824 LSU ribosomal protein L31P no data 38 93
o Rhizobium sp. OAE497 ABIE40_RS15920 50S ribosomal protein L31 insig. 44 97
o Rhodospirillum rubrum S1H Rru_A1072 Ribosomal protein L31 (NCBI) no data 42 100
o Dinoroseobacter shibae DFL-12 Dshi_0340 ribosomal protein L31 (RefSeq) no data 46 97
o Cupriavidus basilensis FW507-4G11 RR42_RS13325 50S ribosomal protein L31 no data 40 93
o Magnetospirillum magneticum AMB-1 AMB_RS15300 50S ribosomal protein L31 no data 44 100
o Fusobacterium nucleatum SB010 HUW76_07620 type B 50S ribosomal protein L31 cofit 43 100
o Rhodopseudomonas palustris CGA009 TX73_004735 50S ribosomal protein L31 no data 45 100
o Burkholderia phytofirmans PsJN BPHYT_RS09025 50S ribosomal protein L31 type B no data 42 93
o Ralstonia sp. UNC404CL21Col ABZR87_RS10740 type B 50S ribosomal protein L31 no data 37 93
o Sphingobium sp. HT1-2 GFF2421 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent no data 43 96
o Lysobacter sp. OAE881 ABIE51_RS17205 type B 50S ribosomal protein L31 no data 38 94
o Paraburkholderia graminis OAS925 ABIE53_002040 large subunit ribosomal protein L31 no data 42 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1202.1 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent no data 37 93
o Rhodanobacter sp. FW510-T8 OKGIIK_12080 rpmE type B 50S ribosomal protein L31 no data 37 93
o Caulobacter crescentus NA1000 CCNA_03384 LSU ribosomal protein L31P strong 47 100
o Caulobacter crescentus NA1000 Δfur CCNA_03384 LSU ribosomal protein L31P no data 47 100
o Agrobacterium fabrum C58 Atu3743 50S ribosomal protein L31 no data 44 97
o Acidovorax sp. GW101-3H11 Ac3H11_465 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent no data 42 100
o Bosea sp. OAE506 ABIE41_RS09340 50S ribosomal protein L31 insig. 45 99
o Rhodanobacter denitrificans MT42 LRK55_RS11540 type B 50S ribosomal protein L31 no data 37 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS11815 type B 50S ribosomal protein L31 no data 37 93
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS16725 type B 50S ribosomal protein L31 no data 37 93
o Synechocystis sp000284455 PCC 6803 SGL_RS05710 50S ribosomal protein L31 no data 43 97
o Phaeobacter inhibens DSM 17395 PGA1_c00500 50S ribosomal protein L31 no data 43 97
o Herbaspirillum seropedicae SmR1 HSERO_RS04310 50S ribosomal protein L31 no data 40 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15110 50S ribosomal protein L31 type B no data 39 93
o Ralstonia solanacearum PSI07 RPSI07_RS18265 50S ribosomal protein L31 type B no data 39 93
o Ralstonia solanacearum UW163 UW163_RS12580 50S ribosomal protein L31 type B no data 39 93
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19900 50S ribosomal protein L31 no data 37 91
o Ralstonia solanacearum GMI1000 RS_RS05925 50S ribosomal protein L31 type B no data 37 93
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11830 type B 50S ribosomal protein L31 no data 35 94
o Xanthobacter sp. DMC5 GFF4722 50S ribosomal protein L31 no data 42 99
o Variovorax sp. SCN45 GFF1101 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent no data 42 91
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08850 50S ribosomal protein L31 no data 41 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00655 type B 50S ribosomal protein L31 no data 36 100
  Acinetobacter radioresistens SK82 MPMX26_00304 50S ribosomal protein L31 type B insig. 35 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0177 ribosomal protein L31 no data 39 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4238 LSU ribosomal protein L31p no data 39 100
o Phocaeicola dorei CL03T12C01 ABI39_RS08260 type B 50S ribosomal protein L31 no data 35 100
o Variovorax sp. OAS795 ABID97_RS14640 type B 50S ribosomal protein L31 no data 41 91
  Pseudomonas protegens RBAN4 FABNJH_24755 rpmE2 type B 50S ribosomal protein L31 no data 40 97
  Pseudomonas aeruginosa MRSN321 DY961_RS14975 type B 50S ribosomal protein L31 insig. 42 100
  Pseudomonas aeruginosa PA14 IKLFDK_18385 type B 50S ribosomal protein L31 insig. 42 100
  Pseudomonas aeruginosa PUPa3 DQ20_RS42155 type B 50S ribosomal protein L31 sig. 42 100
o Sinorhizobium meliloti 1021 SMc03990 50S ribosomal protein L31 no data 40 97
  Rahnella sp. WP5 EX31_RS22465 type B 50S ribosomal protein L31 insig. 35 100
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1739 ribosomal protein L31 no data 33 91
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16060 type B 50S ribosomal protein L31 no data 32 100
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10805 50S ribosomal protein L31 no data 38 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_04510 50S ribosomal protein L31 type B cofit 34 100
  Pseudomonas syringae pv. syringae B728a Psyr_3920 LSU ribosomal protein L31P insig. 37 97
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3920 LSU ribosomal protein L31P insig. 37 97
o Bacteroides stercoris CC31F HMPREF1181_RS13250 type B 50S ribosomal protein L31 no data 38 93
  Pseudomonas fluorescens SBW25 PFLU_RS05495 type B 50S ribosomal protein L31 insig. 38 97
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05495 type B 50S ribosomal protein L31 insig. 38 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4373 LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent insig. 33 96
  Enterobacter asburiae PDN3 EX28DRAFT_2504 ribosomal protein L31 insig. 40 93
  Enterobacter sp. TBS_079 MPMX20_01056 50S ribosomal protein L31 type B insig. 40 93
  Bacteroides ovatus ATCC 8483 BACOVA_04437 ribosomal protein L31 no data 32 100
  Bacteroides thetaiotaomicron VPI-5482 BT1692 50S ribosomal protein L31 type B (NCBI ptt file) no data 32 100
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS14770 type B 50S ribosomal protein L31 cofit 40 100
  Pectobacterium carotovorum WPP14 HER17_RS15745 type B 50S ribosomal protein L31 insig. 37 99
  Cellulophaga baltica 18 M666_RS18195 type B 50S ribosomal protein L31 no data 36 99
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14465 type B 50S ribosomal protein L31 no data 35 93
  Serratia liquefaciens MT49 IAI46_05180 type B 50S ribosomal protein L31 insig. 33 100
  Castellaniella sp019104865 MT123 ABCV34_RS00905 type B 50S ribosomal protein L31 no data 31 93
  Klebsiella michiganensis M5al BWI76_RS06735 50S ribosomal protein L31 insig. 36 93
  Erwinia tracheiphila SCR3 LU632_RS18190 type B 50S ribosomal protein L31 insig. 35 96
  Acinetobacter baumannii LAC-4 RR41_RS17045 type B 50S ribosomal protein L31 insig. 31 100
  Escherichia coli ECRC100 OKFHMN_04250 rpmE2-2 type B 50S ribosomal protein L31 cofit 30 96
  Escherichia coli ECRC101 MCAODC_23600 rpmE2-2 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC102 NIAGMN_03680 rpmE2-2 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC98 JDDGAC_07840 rpmE2-2 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC99 KEDOAH_23415 rpmE2-2 type B 50S ribosomal protein L31 no data 30 96
  Pseudomonas sp. BP01 JOY50_RS14120 type B 50S ribosomal protein L31 no data 35 93
  Dickeya dianthicola 67-19 HGI48_RS05785 type B 50S ribosomal protein L31 insig. 35 99
  Dickeya dianthicola ME23 DZA65_RS06110 type B 50S ribosomal protein L31 insig. 35 99
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_16575 rpmE type B 50S ribosomal protein L31 insig. 35 96
  Escherichia coli BL21 ECD_00255 50S ribosomal protein L31 type B; alternative zinc-limitation L31 protein sig. 30 96
  Escherichia fergusonii Becca EFB2_03748 50S ribosomal protein L31 type B insig. 30 96
  Escherichia coli ECOR27 NOLOHH_01965 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECOR38 HEPCGN_07710 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC100 OKFHMN_09190 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC101 MCAODC_28405 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC102 NIAGMN_07245 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC62 BNILDI_00085 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC98 JDDGAC_12830 rpmE2-1 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli ECRC99 KEDOAH_18760 rpmE2-1 type B 50S ribosomal protein L31 no data 30 96
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03385 50S ribosomal protein L31 type B insig. 30 96
  Escherichia coli Nissle 1917 ECOLIN_RS01925 type B 50S ribosomal protein L31 insig. 30 96
  Escherichia coli BW25113 b0296 ykgM 50S ribosomal protein L31 (NCBI) strong 30 96
  Dickeya dadantii 3937 DDA3937_RS05730 type B 50S ribosomal protein L31 insig. 35 99
  Pantoea sp. MT58 IAI47_14520 type B 50S ribosomal protein L31 insig. 38 96
  Klebsiella pneumoniae MKP103 KDGMDA_14795 type B 50S ribosomal protein L31 insig. 31 93
  Klebsiella pneumoniae MRSN742743 KFA93_RS03490 type B 50S ribosomal protein L31 insig. 31 93