Homologs of DVU0042 from Desulfovibrio vulgaris Hildenborough JW710

RNA methyltransferase, TrmH family, group 3 (TIGR)
SEED: 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)
KEGG: RNA methyltransferase, TrmH family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Desulfovibrio vulgaris Hildenborough JW710 DVU0042 RNA methyltransferase, TrmH family, group 3 (TIGR) insig. 100 100
  Desulfovibrio vulgaris Miyazaki F DvMF_2217 tRNA/rRNA methyltransferase (SpoU) (RefSeq) insig. 71 70
o Marinobacter adhaerens HP15 HP15_623 RNA methyltransferase, TrmH family, group 3 insig. 36 92
o Pseudomonas fluorescens SBW25 PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 35 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 35 92
o Pseudomonas sp. RS175 PFR28_05131 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 insig. 35 92
o Pseudomonas simiae WCS417 PS417_02560 23S rRNA methyltransferase sig. 35 92
o Pseudomonas fluorescens GW456-L13 PfGW456L13_143 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) insig. 35 92
o Erwinia tracheiphila SCR3 LU632_RS21745 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 36 93
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3606 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) sig. 35 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1402 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) insig. 35 92
o Pseudomonas fluorescens FW300-N2C3 AO356_08605 23S rRNA methyltransferase insig. 35 92
o Pseudomonas stutzeri RCH2 Psest_0692 rRNA methylase, putative, group 3 strong 35 92
o Pseudomonas syringae pv. syringae B728a Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase insig. 34 92
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase sig. 34 92
o Serratia liquefaciens MT49 IAI46_01665 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 36 93
o Pseudomonas fluorescens FW300-N2E3 AO353_13205 23S rRNA methyltransferase sig. 35 92
o Rahnella sp. WP5 EX31_RS08780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 35 93
o Shewanella oneidensis MR-1 SO3934 RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) sig. 34 94
o Shewanella sp. ANA-3 Shewana3_0698 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) strong 35 94
o Acinetobacter radioresistens SK82 MPMX26_00241 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB cofit 35 92
o Pantoea sp. MT58 IAI47_02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 36 93
o Dickeya dadantii 3937 DDA3937_RS17255 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 36 93
o Dickeya dianthicola 67-19 HGI48_RS17310 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 36 93
o Pseudomonas sp. S08-1 OH686_15915 23S rRNA (guanosine(2251)-2'-O)-methyltransferase cofit 34 92
o Pseudomonas putida KT2440 PP_4879 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB insig. 33 92
o Fusobacterium nucleatum SB010 HUW76_09335 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB cofit 28 93
o Alteromonas macleodii MIT1002 MIT1002_03605 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB sig. 31 94
o Dickeya dianthicola ME23 DZA65_RS18400 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 35 93
o Shewanella amazonensis SB2B Sama_3066 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) strong 33 92
o Klebsiella michiganensis M5al BWI76_RS02580 23S rRNA (guanosine(2251)-2'-O)-methyltransferase insig. 34 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_13150 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 34 92
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20095 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 30 96
o Enterobacter sp. TBS_079 MPMX20_00461 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB insig. 34 93
o Enterobacter asburiae PDN3 EX28DRAFT_3377 rRNA methylase, putative, group 3 insig. 34 93
o Pectobacterium carotovorum WPP14 HER17_RS03840 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
  Synechococcus elongatus PCC 7942 Synpcc7942_2119 RNA methyltransferase TrmH, group 3 strong 41 68
o Shewanella loihica PV-4 Shew_3288 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) sig. 35 92
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08265 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 35 92
o Escherichia coli BL21 ECD_04047 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent strong 33 93
o Escherichia fergusonii Becca EFB2_04355 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB insig. 33 93
o Escherichia coli ECOR27 NOLOHH_04480 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB cofit 33 93
o Escherichia coli ECOR38 HEPCGN_10445 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB cofit 33 93
o Escherichia coli ECRC101 OKFHMN_12215 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
o Escherichia coli ECRC101 MCAODC_02730 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
o Escherichia coli ECRC102 NIAGMN_10065 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
o Escherichia coli ECRC62 BNILDI_07010 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
o Escherichia coli ECRC98 JDDGAC_15855 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 33 93
o Escherichia coli ECRC99 KEDOAH_15940 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 33 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03862 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 sig. 33 93
o Escherichia coli Nissle 1917 ECOLIN_RS24270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 93
o Escherichia coli BW25113 b4180 rlmB 23S rRNA (Gm2251)-methyltransferase (NCBI) sig. 33 93
o Kangiella aquimarina DSM 16071 B158DRAFT_1990 23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185) insig. 32 92
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4838 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) cofit 34 93
  Mycobacterium tuberculosis H37Rv Rv3579c Possible tRNA/rRNA methyltransferase no data 36 73
  Magnetospirillum magneticum AMB-1 AMB_RS15870 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 34 84
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF833 '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 insig. 33 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3368.1 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) sig. 33 96
o Rhodanobacter denitrificans MT42 LRK55_RS00230 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS22920 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB strong 32 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00713 23S rRNA Gm-2251 2'-O-methyltransferase insig. 33 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00490 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 32 94
o Acidovorax sp. GW101-3H11 Ac3H11_4141 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) strong 33 93
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18220 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB strong 27 92
o Paraburkholderia graminis OAS925 ABIE53_001941 23S rRNA (guanosine2251-2'-O)-methyltransferase sig. 33 94
o Burkholderia phytofirmans PsJN BPHYT_RS08460 23S rRNA (guanosine-2'-O-)-methyltransferase no data 33 94
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15350 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 32 95
o Ralstonia solanacearum UW163 UW163_RS12815 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 32 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS08890 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB strong 30 92
  Caulobacter crescentus NA1000 CCNA_01297 23S rRNA Gm2251 methyltransferase strong 35 79
  Caulobacter crescentus NA1000 Δfur CCNA_01297 23S rRNA Gm2251 methyltransferase cofit 35 79
o Cupriavidus basilensis FW507-4G11 RR42_RS13060 23S rRNA methyltransferase sig. 32 94
  Azospirillum brasilense Sp245 AZOBR_RS11565 ribosomal large subunit pseudouridine synthase insig. 39 71
o Phocaeicola dorei CL03T12C01 ABI39_RS14495 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 26 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS09355 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 29 92
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2186 rRNA methylase, putative, group 3 sig. 26 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1814 rRNA methylase, putative, group 3 sig. 38 66
  Bifidobacterium breve UCC2003 BBR_RS20270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 34 69
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03850 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB no data 39 73
o Variovorax sp. SCN45 GFF1018 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) sig. 31 93
o Herbaspirillum seropedicae SmR1 HSERO_RS09295 23S rRNA (guanosine-2'-O-)-methyltransferase insig. 30 92
o Ralstonia solanacearum GMI1000 RS_RS06160 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB strong 31 95
o Lysobacter sp. OAE881 ABIE51_RS07480 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 31 95
o Rhodanobacter sp. FW510-T8 OKGIIK_06760 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 32 94
o Ralstonia solanacearum PSI07 RPSI07_RS18025 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB cofit 31 95
o Variovorax sp. OAS795 ABID97_RS14320 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB sig. 31 93
  Bacteroides stercoris CC31F HMPREF1181_RS10895 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 27 92
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02015 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 26 94
  Azospirillum sp. SherDot2 MPMX19_00374 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB no data 35 71
  Bacteroides ovatus ATCC 8483 BACOVA_00199 RNA methyltransferase, TrmH family, group 3 sig. 27 92
  Bacteroides thetaiotaomicron VPI-5482 BT1360 tRNA/rRNA methyltransferase (NCBI ptt file) no data 26 95
  Dinoroseobacter shibae DFL-12 Dshi_2571 RNA methyltransferase, TrmH family, group 3 (RefSeq) insig. 34 68
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1266.1 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] insig. 29 95
o Castellaniella sp019104865 MT123 ABCV34_RS06630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 32 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS10990 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB strong 29 95
  Lysobacter sp. OAE881 ABIE51_RS16975 TrmH family RNA methyltransferase insig. 30 89
  Desulfovibrio vulgaris Miyazaki F DvMF_2217 tRNA/rRNA methyltransferase (SpoU) (RefSeq) insig. 58 25
o Dechlorosoma suillum PS Dsui_1899 rRNA methylase, putative, group 3 cofit 31 93
  Rhodopseudomonas palustris CGA009 TX73_017390 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 35 68
o Bosea sp. OAE506 ABIE41_RS14185 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB insig. 33 94