Homologs of rumA from Desulfovibrio vulgaris Hildenborough JW710

rumA: 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR)
SEED: RNA methyltransferase, TrmA family
KEGG:

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 100 100
o Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 55 96
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 35 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 33 97
o Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA cofit 35 95
o Bacteroides stercoris CC31F HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 35 96
o Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 35 94
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 97
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 35 96
o Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 96
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 33 96
o Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 36 98
o Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 95
o Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 97
o Fusobacterium nucleatum SB010 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 24 93
o Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 96
o Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 28 97
o Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 28 93
o Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 95
o Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 27 96
o Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 28 96
o Pantoea sp. MT58 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 81
o Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 27 96
o Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 27 95
o Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 28 93
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS04310 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 29 81
o Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 96
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 95
o Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 96
o Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 27 96
o Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 97
o Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 98
o Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 27 95
o Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
o Erwinia tracheiphila SCR3 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 80
  Serratia liquefaciens MT49 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 81
o Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 28 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 96
o Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 96
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 27 84
o Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 27 95
  Enterobacter sp. TBS_079 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 81
o Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 27 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 27 95
  Enterobacter asburiae PDN3 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB insig. 28 81
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 27 95
  Dickeya dadantii 3937 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
o Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 25 95
o Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 93
o Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 96
  Dickeya dianthicola 67-19 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Dickeya dianthicola ME23 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
o Pseudomonas aeruginosa MRSN321 DY961_RS07780 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 29 96
o Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 29 96
o Pseudomonas aeruginosa PUPa3 DQ20_RS45015 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 29 96
  Escherichia coli BL21 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent insig. 27 81
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Escherichia coli ECOR38 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Rahnella sp. WP5 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 81
  Escherichia fergusonii Becca EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Escherichia coli Nissle 1917 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
o Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 93
  Escherichia coli ECOR27 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Pectobacterium carotovorum WPP14 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Escherichia coli ECRC62 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
o Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 96
o Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 25 95
o Pseudomonas segetis P6 ACVTMO_RS08190 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) insig. 28 71
o Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
  Escherichia coli ECRC100 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 27 81
  Escherichia coli ECRC101 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Escherichia coli ECRC102 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 27 81
  Escherichia coli ECRC99 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC no data 27 81
  Escherichia coli ECRC98 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 81
  Escherichia coli BW25113 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) sig. 27 81
  Vibrio cholerae E7946 ATCC 55056 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 26 81
  Shewanella oneidensis MR-1 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) insig. 28 82
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 27 91
o Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 28 96
o Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 28 91
  Klebsiella pneumoniae MKP103 KDGMDA_17730 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 81
o Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 28 91
o Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 26 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 96