Homologs of holB from Shewanella oneidensis MR-1

holB: DNA polymerase III, delta prime subunit (NCBI ptt file)
SEED: DNA polymerase III delta prime subunit (EC 2.7.7.7)
KEGG: DNA polymerase III subunit delta'

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2612 holB DNA polymerase III, delta prime subunit (NCBI ptt file) no data 100 100
o Shewanella sp. ANA-3 Shewana3_1767 DNA polymerase III, delta prime subunit (RefSeq) no data 93 100
o Shewanella loihica PV-4 Shew_1580 DNA polymerase III, delta prime subunit (RefSeq) no data 57 97
o Shewanella amazonensis SB2B Sama_2042 DNA-directed DNA polymerase (RefSeq) no data 57 96
  Alteromonas macleodii MIT1002 MIT1002_01739 DNA polymerase III subunit delta' no data 39 62
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06135 DNA polymerase III subunit delta' no data 37 71
  Pseudomonas fluorescens FW300-N2E3 AO353_01335 DNA polymerase III subunit delta' no data 37 75
  Pseudomonas sp. SVBP6 COO64_RS05775 DNA polymerase III subunit delta' no data 38 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2111 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 39 61
  Rhodanobacter sp. FW510-T8 OKGIIK_05750 holB DNA polymerase III subunit delta' no data 37 71
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04426 'DNA polymerase III subunit delta'' transl_table=11 no data 37 72
  Pseudomonas sp. DMC3 GFF4751 hypothetical protein no data 41 61
  Pseudomonas orientalis W4I3 QF045_RS23490 DNA polymerase III subunit delta' no data 37 72
  Pseudomonas simiae WCS417 PS417_21410 DNA polymerase III subunit delta' no data 37 72
  Vibrio cholerae E7946 ATCC 55056 CSW01_10065 DNA polymerase III subunit delta' no data 40 54
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5958 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 38 68
  Pseudomonas fluorescens SBW25 PFLU_RS23025 DNA polymerase III subunit delta' no data 36 72
  Pseudomonas fluorescens SBW25-INTG PFLU_RS23025 DNA polymerase III subunit delta' no data 36 72
  Pseudomonas sp. RS175 PFR28_03004 'DNA polymerase III subunit delta'' transl_table=11 no data 37 73
  Erwinia amylovora T8 OLJFJH_15500 DNA polymerase III subunit delta' no data 39 55
  Pseudomonas segetis P6 ACVTMO_RS10340 DNA polymerase III subunit delta' no data 34 75
  Pseudomonas fluorescens FW300-N2C3 AO356_20195 DNA polymerase III subunit delta' no data 38 61
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01150 DNA polymerase III subunit delta' no data 40 54
  Pseudomonas putida KT2440 PP_1966 DNA polymerase III subunit delta' no data 37 71
  Rhodanobacter denitrificans MT42 LRK55_RS00925 DNA polymerase III subunit delta' no data 40 54
  Pseudomonas aeruginosa MRSN321 DY961_RS02170 DNA polymerase III subunit delta' no data 34 72
  Pseudomonas aeruginosa PUPa3 DQ20_RS33415 DNA polymerase III subunit delta' no data 34 72
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_422 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 37 68
  Pseudomonas aeruginosa PA14 IKLFDK_15065 DNA polymerase III subunit delta' no data 34 72
  Pseudomonas sp. S08-1 OH686_22170 DNA polymerase III delta prime subunit no data 37 70
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00650 holB DNA polymerase III subunit delta' no data 37 65
  Erwinia tracheiphila SCR3 LU632_RS14790 holB DNA polymerase III subunit delta' no data 37 65
  Pantoea sp. MT58 IAI47_12040 DNA polymerase III subunit delta' no data 35 57
  Rahnella sp. WP5 EX31_RS24465 DNA polymerase III subunit delta' no data 37 65
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS05295 DNA polymerase III subunit delta' no data 37 53
  Pseudomonas syringae pv. syringae B728a Psyr_1653 DNA polymerase III, delta prime subunit no data 35 69
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1653 DNA polymerase III, delta prime subunit no data 35 69
  Pseudomonas sp. BP01 JOY50_RS16760 DNA polymerase III subunit delta' no data 36 68
o Dickeya dadantii 3937 DDA3937_RS13090 DNA polymerase III subunit delta' no data 31 85
  Dickeya dianthicola 67-19 HGI48_RS13155 DNA polymerase III subunit delta' no data 31 82
  Klebsiella michiganensis M5al BWI76_RS11120 DNA polymerase III subunit delta' no data 36 56
  Enterobacter sp. TBS_079 MPMX20_01779 DNA polymerase III subunit delta' no data 34 56
  Pseudomonas stutzeri RCH2 Psest_1694 DNA polymerase III, delta' subunit no data 41 48
  Lysobacter sp. OAE881 ABIE51_RS13910 DNA polymerase III subunit delta' no data 33 78
  Dickeya dianthicola ME23 DZA65_RS13625 DNA polymerase III subunit delta' no data 31 82
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS08920 DNA polymerase III subunit delta' no data 36 71
  Serratia liquefaciens MT49 IAI46_09820 DNA polymerase III subunit delta' no data 36 65
  Enterobacter asburiae PDN3 EX28DRAFT_1830 DNA polymerase III, delta' subunit no data 34 54
  Kangiella aquimarina DSM 16071 B158DRAFT_1747 DNA polymerase III, delta' subunit no data 39 50
  Pectobacterium carotovorum WPP14 HER17_RS08680 DNA polymerase III subunit delta' no data 35 53
  Dechlorosoma suillum PS Dsui_2654 DNA polymerase III, delta'' subunit no data 35 61
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3381 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 32 78
  Ralstonia sp. UNC404CL21Col ABZR87_RS12470 DNA polymerase III subunit delta' no data 34 49
  Castellaniella sp019104865 MT123 ABCV34_RS03965 DNA polymerase III subunit delta' no data 30 79
  Ralstonia solanacearum GMI1000 RS_RS09010 DNA polymerase III subunit delta' no data 33 53
  Ralstonia solanacearum PSI07 RPSI07_RS16455 DNA polymerase III subunit delta' no data 32 54
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS01020 DNA polymerase III subunit delta' no data 32 54
  Ralstonia solanacearum UW163 UW163_RS14330 DNA polymerase III subunit delta' no data 32 54
  Marinobacter adhaerens HP15 HP15_1844 DNA polymerase III, delta prime subunit no data 34 61
  Klebsiella pneumoniae MKP103 KDGMDA_18725 DNA polymerase III subunit delta' no data 33 78
  Escherichia coli BW25113 b1099 holB DNA polymerase III subunit delta' (NCBI) no data 34 56
  Escherichia coli Nissle 1917 ECOLIN_RS06345 DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC100 OKFHMN_03545 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC101 MCAODC_22905 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC102 NIAGMN_24285 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC98 JDDGAC_07205 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli BL21 ECD_01095 DNA polymerase III, delta prime subunit no data 33 56
  Escherichia coli ECOR27 NOLOHH_21075 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC99 KEDOAH_24210 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02567 'DNA polymerase III subunit delta'' transl_table=11 no data 33 56
  Escherichia fergusonii Becca EFB2_02876 DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECOR38 HEPCGN_23935 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC62 BNILDI_19235 holB DNA polymerase III subunit delta' no data 33 56
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4663 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 32 55
  Herbaspirillum seropedicae SmR1 HSERO_RS13015 DNA polymerase III subunit delta' no data 34 65
  Cupriavidus basilensis FW507-4G11 RR42_RS10900 DNA polymerase III subunit delta' no data 30 49
  Methylophilus sp. DMC18 GFF630 hypothetical protein no data 37 54
  Acidovorax sp. GW101-3H11 Ac3H11_2490 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 28 77
  Burkholderia phytofirmans PsJN BPHYT_RS09630 DNA polymerase III subunit delta' no data 31 48
  Paraburkholderia graminis OAS925 ABIE53_002164 DNA polymerase-3 subunit delta' no data 31 48
  Acinetobacter baumannii LAC-4 RR41_RS12065 DNA polymerase III subunit delta' no data 40 36
  Mycobacterium tuberculosis H37Rv Rv3644c Possible DNA polymerase no data 31 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3990.1 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 33 54
  Azospirillum sp. SherDot2 MPMX19_01467 hypothetical protein no data 30 48
  Caulobacter crescentus NA1000 CCNA_01899 DNA polymerase III, delta no data 35 52
  Caulobacter crescentus NA1000 Δfur CCNA_01899 DNA polymerase III, delta no data 35 52
  Azospirillum brasilense Sp245 AZOBR_RS08785 DNA polymerase III subunit delta' no data 31 46
  Rhodopseudomonas palustris CGA009 TX73_014380 DNA polymerase III subunit delta' no data 34 47
  Synechocystis sp000284455 PCC 6803 SGL_RS11805 DNA polymerase III subunit delta' no data 41 30
  Bosea sp. OAE506 ABIE41_RS15955 DNA polymerase III subunit delta' no data 28 58
  Synechococcus elongatus PCC 7942 Synpcc7942_0912 dnaX DNA polymerase III, tau subunit no data 35 46
  Phaeobacter inhibens DSM 17395 PGA1_c08000 DNA polymerase III, gamma/tau subunits no data 32 52
  Bacteroides stercoris CC31F HMPREF1181_RS00125 DNA polymerase III subunit delta' no data 26 55
  Sphingobium sp. HT1-2 GFF5302 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 42 31
  Pseudomonas segetis P6 ACVTMO_RS11080 dnaX DNA polymerase III subunit gamma/tau no data 26 75
  Bacteroides thetaiotaomicron VPI-5482 BT3820 putative DNA polymerase III, delta subunit (NCBI ptt file) no data 26 47
  Fusobacterium nucleatum SB010 HUW76_02095 DNA polymerase III subunit gamma/tau no data 29 46
  Phocaeicola dorei CL03T12C01 ABI39_RS09235 DNA polymerase III subunit delta no data 27 47
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13645 DNA polymerase III subunit delta no data 27 47
  Bacteroides ovatus ATCC 8483 BACOVA_03665 putative DNA polymerase III, delta no data 26 47