Homologs of holB from Shewanella oneidensis MR-1

holB: DNA polymerase III, delta prime subunit (NCBI ptt file)
SEED: DNA polymerase III delta prime subunit (EC 2.7.7.7)
KEGG: DNA polymerase III subunit delta'

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2612 holB DNA polymerase III, delta prime subunit (NCBI ptt file) no data 100 100
o Shewanella sp. ANA-3 Shewana3_1767 DNA polymerase III, delta prime subunit (RefSeq) no data 93 100
o Shewanella loihica PV-4 Shew_1580 DNA polymerase III, delta prime subunit (RefSeq) no data 57 97
o Shewanella amazonensis SB2B Sama_2042 DNA-directed DNA polymerase (RefSeq) no data 57 96
  Alteromonas macleodii MIT1002 MIT1002_01739 DNA polymerase III subunit delta' no data 39 62
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06135 DNA polymerase III subunit delta' no data 37 71
  Pseudomonas fluorescens FW300-N2E3 AO353_01335 DNA polymerase III subunit delta' no data 37 75
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2111 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 39 61
  Rhodanobacter sp. FW510-T8 OKGIIK_05750 holB DNA polymerase III subunit delta' no data 37 71
  Pseudomonas simiae WCS417 PS417_21410 DNA polymerase III subunit delta' no data 37 72
  Vibrio cholerae E7946 ATCC 55056 CSW01_10065 DNA polymerase III subunit delta' no data 40 54
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5958 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 38 68
  Pseudomonas fluorescens SBW25 PFLU_RS23025 DNA polymerase III subunit delta' no data 36 72
  Pseudomonas fluorescens SBW25-INTG PFLU_RS23025 DNA polymerase III subunit delta' no data 36 72
  Pseudomonas sp. RS175 PFR28_03004 'DNA polymerase III subunit delta'' transl_table=11 no data 37 73
  Pseudomonas fluorescens FW300-N2C3 AO356_20195 DNA polymerase III subunit delta' no data 38 61
  Pseudomonas putida KT2440 PP_1966 DNA polymerase III subunit delta' no data 37 71
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01150 DNA polymerase III subunit delta' no data 40 54
  Rhodanobacter denitrificans MT42 LRK55_RS00925 DNA polymerase III subunit delta' no data 40 54
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_422 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 37 68
  Pseudomonas sp. S08-1 OH686_22170 DNA polymerase III delta prime subunit no data 37 70
  Pantoea sp. MT58 IAI47_12040 DNA polymerase III subunit delta' no data 35 57
  Rahnella sp. WP5 EX31_RS24465 DNA polymerase III subunit delta' no data 37 65
  Erwinia tracheiphila SCR3 LU632_RS14790 holB DNA polymerase III subunit delta' no data 37 65
  Pseudomonas syringae pv. syringae B728a Psyr_1653 DNA polymerase III, delta prime subunit no data 35 69
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1653 DNA polymerase III, delta prime subunit no data 35 69
o Dickeya dadantii 3937 DDA3937_RS13090 DNA polymerase III subunit delta' no data 31 85
  Klebsiella michiganensis M5al BWI76_RS11120 DNA polymerase III subunit delta' no data 36 56
  Dickeya dianthicola 67-19 HGI48_RS13155 DNA polymerase III subunit delta' no data 31 82
  Enterobacter sp. TBS_079 MPMX20_01779 DNA polymerase III subunit delta' no data 34 56
  Pseudomonas stutzeri RCH2 Psest_1694 DNA polymerase III, delta' subunit no data 41 48
  Lysobacter sp. OAE881 ABIE51_RS13910 DNA polymerase III subunit delta' no data 33 78
  Dickeya dianthicola ME23 DZA65_RS13625 DNA polymerase III subunit delta' no data 31 82
  Serratia liquefaciens MT49 IAI46_09820 DNA polymerase III subunit delta' no data 36 65
  Enterobacter asburiae PDN3 EX28DRAFT_1830 DNA polymerase III, delta' subunit no data 34 54
  Kangiella aquimarina DSM 16071 B158DRAFT_1747 DNA polymerase III, delta' subunit no data 39 50
  Pectobacterium carotovorum WPP14 HER17_RS08680 DNA polymerase III subunit delta' no data 35 53
  Dechlorosoma suillum PS Dsui_2654 DNA polymerase III, delta'' subunit no data 35 61
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3381 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 32 78
  Ralstonia sp. UNC404CL21Col ABZR87_RS12470 DNA polymerase III subunit delta' no data 34 49
  Castellaniella sp019104865 MT123 ABCV34_RS03965 DNA polymerase III subunit delta' no data 30 79
  Ralstonia solanacearum GMI1000 RS_RS09010 DNA polymerase III subunit delta' no data 33 53
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS01020 DNA polymerase III subunit delta' no data 32 54
  Ralstonia solanacearum PSI07 RPSI07_RS16455 DNA polymerase III subunit delta' no data 32 54
  Ralstonia solanacearum UW163 UW163_RS14330 DNA polymerase III subunit delta' no data 32 54
  Marinobacter adhaerens HP15 HP15_1844 DNA polymerase III, delta prime subunit no data 34 61
  Escherichia coli BW25113 b1099 holB DNA polymerase III subunit delta' (NCBI) no data 34 56
  Escherichia coli ECRC101 OKFHMN_03545 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC101 MCAODC_22905 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC102 NIAGMN_24285 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC98 JDDGAC_07205 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli Nissle 1917 ECOLIN_RS06345 DNA polymerase III subunit delta' no data 33 56
  Escherichia coli BL21 ECD_01095 DNA polymerase III, delta prime subunit no data 33 56
  Escherichia coli ECOR27 NOLOHH_21075 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC99 KEDOAH_24210 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02567 'DNA polymerase III subunit delta'' transl_table=11 no data 33 56
  Escherichia coli ECOR38 HEPCGN_23935 holB DNA polymerase III subunit delta' no data 33 56
  Escherichia fergusonii Becca EFB2_02876 DNA polymerase III subunit delta' no data 33 56
  Escherichia coli ECRC62 BNILDI_19235 holB DNA polymerase III subunit delta' no data 33 56
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4663 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 32 55
  Herbaspirillum seropedicae SmR1 HSERO_RS13015 DNA polymerase III subunit delta' no data 34 65
  Cupriavidus basilensis FW507-4G11 RR42_RS10900 DNA polymerase III subunit delta' no data 30 49
  Acidovorax sp. GW101-3H11 Ac3H11_2490 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 28 77
  Burkholderia phytofirmans PsJN BPHYT_RS09630 DNA polymerase III subunit delta' no data 31 48
  Paraburkholderia graminis OAS925 ABIE53_002164 DNA polymerase-3 subunit delta' no data 31 48
  Mycobacterium tuberculosis H37Rv Rv3644c Possible DNA polymerase no data 31 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3990.1 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 33 54
  Azospirillum sp. SherDot2 MPMX19_01467 hypothetical protein no data 30 48
  Caulobacter crescentus NA1000 CCNA_01899 DNA polymerase III, delta no data 35 52
  Caulobacter crescentus NA1000 Δfur CCNA_01899 DNA polymerase III, delta no data 35 52
  Rhodopseudomonas palustris CGA009 TX73_014380 DNA polymerase III subunit delta' no data 34 47
  Azospirillum brasilense Sp245 AZOBR_RS08785 DNA polymerase III subunit delta' no data 31 46
  Bosea sp. OAE506 ABIE41_RS15955 DNA polymerase III subunit delta' no data 28 58
  Synechococcus elongatus PCC 7942 Synpcc7942_0912 dnaX DNA polymerase III, tau subunit no data 35 46
  Phaeobacter inhibens DSM 17395 PGA1_c08000 DNA polymerase III, gamma/tau subunits no data 32 52
  Bacteroides stercoris CC31F HMPREF1181_RS00125 DNA polymerase III subunit delta' no data 26 55
  Bacteroides thetaiotaomicron VPI-5482 BT3820 putative DNA polymerase III, delta subunit (NCBI ptt file) no data 26 47
  Fusobacterium nucleatum SB010 HUW76_02095 DNA polymerase III subunit gamma/tau no data 29 46
  Phocaeicola dorei CL03T12C01 ABI39_RS09235 DNA polymerase III subunit delta no data 27 47
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13645 DNA polymerase III subunit delta no data 27 47
  Bacteroides ovatus ATCC 8483 BACOVA_03665 putative DNA polymerase III, delta no data 26 47
  Pseudomonas simiae WCS417 PS417_20815 DNA polymerase III subunit gamma/tau no data 29 60
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3862 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) no data 29 60
  Pseudomonas fluorescens FW300-N2E3 AO353_00685 DNA polymerase III subunit gamma/tau no data 29 60
  Variovorax sp. OAS795 ABID97_RS15990 DNA polymerase III subunit delta' no data 28 77
  Pseudomonas syringae pv. syringae B728a Psyr_1825 DNA polymerase III, tau subunit no data 29 60
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1825 DNA polymerase III, tau subunit no data 29 60
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4077 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) no data 29 60
  Pseudomonas sp. RS175 PFR28_01074 Holliday junction ATP-dependent DNA helicase RuvB no data 29 61
  Pseudomonas fluorescens FW300-N2C3 AO356_02510 DNA polymerase III subunit gamma/tau no data 29 61
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2328 DNA polymerase III subunits gamma and tau (EC 2.7.7.7) no data 29 61
  Variovorax sp. SCN45 GFF32 DNA polymerase III delta prime subunit (EC 2.7.7.7) no data 31 53
  Pseudomonas fluorescens SBW25 PFLU_RS22430 DNA polymerase III subunit gamma/tau no data 28 60
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22430 DNA polymerase III subunit gamma/tau no data 28 60
  Pseudomonas stutzeri RCH2 Psest_2547 DNA polymerase III, subunit gamma and tau no data 28 56
  Pseudomonas sp. S08-1 OH686_02395 DNA polymerase III, subunit gamma and tau no data 28 60
  Magnetospirillum magneticum AMB-1 AMB_RS12305 DNA polymerase III subunit delta' no data 33 33
  Marinobacter adhaerens HP15 HP15_1885 DNA polymerase III subunits gamma and tau no data 32 46
  Rhodospirillum rubrum S1H Rru_A1702 DNA-directed DNA polymerase (NCBI) no data 44 29
  Pseudomonas putida KT2440 PP_4269 DNA polymerase III, gamma subunit no data 29 60