Homologs of SO2006 from Shewanella oneidensis MR-1

NifR3/Smm1 family protein (NCBI ptt file)
SEED: tRNA-dihydrouridine synthase C (EC 1.-.-.-)
KEGG: tRNA-dihydrouridine synthase C

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2006 NifR3/Smm1 family protein (NCBI ptt file) sig. 100 100
o Shewanella sp. ANA-3 Shewana3_2452 dihydrouridine synthase, DuS (RefSeq) insig. 97 100
o Shewanella amazonensis SB2B Sama_1303 NifR3/Smm1 family protein (RefSeq) insig. 81 99
o Alteromonas macleodii MIT1002 MIT1002_01411 putative tRNA-dihydrouridine synthase insig. 60 97
o Shewanella loihica PV-4 Shew_2242 dihydrouridine synthase, DuS (RefSeq) insig. 57 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_05615 tRNA dihydrouridine(16) synthase DusC insig. 55 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03880 tRNA dihydrouridine(16) synthase DusC cofit 54 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_19645 dusC tRNA dihydrouridine(16) synthase DusC cofit 56 98
o Erwinia tracheiphila SCR3 LU632_RS09220 dusC tRNA dihydrouridine(16) synthase DusC insig. 56 98
o Pantoea sp. MT58 IAI47_13430 tRNA dihydrouridine(16) synthase DusC insig. 54 98
o Enterobacter asburiae PDN3 EX28DRAFT_0417 tRNA-dihydrouridine synthase insig. 54 97
o Rahnella sp. WP5 EX31_RS23800 tRNA dihydrouridine(16) synthase DusC insig. 55 96
o Pectobacterium carotovorum WPP14 HER17_RS13295 tRNA dihydrouridine(16) synthase DusC insig. 55 97
o Enterobacter sp. TBS_079 MPMX20_03112 tRNA-dihydrouridine(16) synthase insig. 54 97
o Serratia liquefaciens MT49 IAI46_06650 tRNA dihydrouridine(16) synthase DusC insig. 54 97
o Escherichia coli ECOR38 HEPCGN_22850 dusC tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Klebsiella pneumoniae MKP103 KDGMDA_26575 tRNA dihydrouridine(16) synthase DusC insig. 55 96
o Klebsiella pneumoniae MRSN742743 KFA93_RS06570 dusC;go_function=tRNA tRNA dihydrouridine(16) synthase DusC insig. 55 96
o Escherichia coli ECRC100 OKFHMN_23615 dusC tRNA dihydrouridine(16) synthase DusC cofit 53 97
o Escherichia coli ECRC101 MCAODC_14665 dusC tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Escherichia coli ECRC102 NIAGMN_21380 dusC tRNA dihydrouridine(16) synthase DusC cofit 53 97
o Escherichia coli ECRC98 JDDGAC_27570 dusC tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Escherichia coli ECRC99 KEDOAH_04570 dusC tRNA dihydrouridine(16) synthase DusC no data 53 97
o Escherichia fergusonii Becca EFB2_01716 tRNA-dihydrouridine(16) synthase insig. 53 97
  Escherichia coli Nissle 1917 ECOLIN_RS12530 tRNA dihydrouridine(16) synthase DusC no data 53 97
  Escherichia coli Nissle 1917 ECOLIN_RS25475 tRNA dihydrouridine(16) synthase DusC no data 53 97
o Escherichia coli ECRC62 BNILDI_14105 dusC tRNA dihydrouridine(16) synthase DusC cofit 53 97
o Dickeya dadantii 3937 DDA3937_RS08715 tRNA dihydrouridine(16) synthase DusC insig. 54 97
o Escherichia coli BL21 ECD_02069 tRNA-dihydrouridine synthase C insig. 53 97
o Escherichia coli ECOR27 NOLOHH_15155 dusC tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01571 tRNA-dihydrouridine(16) synthase insig. 53 97
o Escherichia coli BW25113 b2140 dusC tRNA-dihydrouridine synthase C (NCBI) insig. 53 97
o Dickeya dianthicola 67-19 HGI48_RS08810 tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Dickeya dianthicola ME23 DZA65_RS09115 tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Klebsiella michiganensis M5al BWI76_RS19565 tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Erwinia amylovora T8 OLJFJH_16680 tRNA dihydrouridine(16) synthase DusC insig. 53 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3804 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 52 97
o Pseudomonas sp. S08-1 OH686_04505 tRNA-dihydrouridine(16) synthase cofit 49 100
o Pseudomonas sp. BP01 JOY50_RS16650 tRNA-dihydrouridine synthase insig. 49 97
o Pseudomonas putida KT2440 PP_1981 tRNA-dihydrouridine synthase C insig. 49 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3560 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 51 98
o Acinetobacter baumannii LAC-4 RR41_RS15310 tRNA-dihydrouridine synthase insig. 47 98
o Pseudomonas sp. SVBP6 COO64_RS05685 tRNA-dihydrouridine synthase insig. 50 93
o Pseudomonas aeruginosa MRSN321 DY961_RS01280 tRNA-dihydrouridine synthase insig. 48 97
o Pseudomonas aeruginosa PA14 IKLFDK_15920 tRNA-dihydrouridine(16) synthase insig. 48 97
o Pseudomonas stutzeri RCH2 Psest_2595 tRNA-dihydrouridine synthase insig. 49 93
o Pseudomonas aeruginosa PUPa3 DQ20_RS34275 tRNA-dihydrouridine synthase insig. 48 97
o Pseudomonas sp. RS175 PFR28_02828 tRNA-dihydrouridine(16) synthase insig. 48 93
o Pseudomonas sp. DMC3 GFF779 tRNA-dihydrouridine(16) synthase no data 48 97
o Pseudomonas simiae WCS417 PS417_18630 tRNA-dihydrouridine synthase C insig. 47 97
o Pseudomonas orientalis W4I3 QF045_RS20760 tRNA-dihydrouridine synthase family protein insig. 46 97
o Pseudomonas fluorescens FW300-N2C3 AO356_21380 tRNA-dihydrouridine synthase C insig. 48 93
o Acinetobacter radioresistens SK82 MPMX26_02471 tRNA-dihydrouridine(16) synthase insig. 46 96
o Pseudomonas fluorescens FW300-N2E3 AO353_20600 tRNA-dihydrouridine synthase C insig. 47 97
o Pseudomonas fluorescens SBW25 PFLU_RS20610 tRNA-dihydrouridine synthase family protein cofit 46 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS20610 tRNA-dihydrouridine synthase family protein insig. 46 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03955 tRNA-dihydrouridine(16) synthase cofit 45 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_19 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 47 97
o Pseudomonas syringae pv. syringae B728a Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase insig. 48 93
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase insig. 48 93
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_58 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 48 93
o Pseudomonas segetis P6 ACVTMO_RS15250 tRNA dihydrouridine synthase insig. 48 93
o Ralstonia solanacearum GMI1000 RS_RS08240 tRNA-dihydrouridine synthase C insig. 45 100
o Burkholderia phytofirmans PsJN BPHYT_RS09165 tRNA-dihydrouridine synthase C insig. 46 98
o Marinobacter adhaerens HP15 HP15_1398 tRNA-dihydrouridine synthase C insig. 50 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS13280 tRNA-dihydrouridine synthase insig. 45 100
o Ralstonia solanacearum PSI07 RPSI07_RS16005 tRNA-dihydrouridine synthase C sig. 45 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3952 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 48 94
o Cupriavidus basilensis FW507-4G11 RR42_RS07625 dihydrouridine synthase insig. 44 98
o Acidovorax sp. GW101-3H11 Ac3H11_1465 tRNA-dihydrouridine synthase C (EC 1.-.-.-) insig. 47 96
o Dechlorosoma suillum PS Dsui_2334 tRNA-dihydrouridine synthase insig. 47 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS01485 dihydrouridine synthase insig. 44 100
o Ralstonia solanacearum UW163 UW163_RS14795 dihydrouridine synthase insig. 44 100
  Synechocystis sp000284455 PCC 6803 SGL_RS14330 tRNA dihydrouridine synthase DusB cofit 32 98
  Kangiella aquimarina DSM 16071 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase strong 33 80
  Agrobacterium fabrum C58 Atu1444 nitrogen regulation protein strong 32 98
  Ralstonia solanacearum GMI1000 RS_RS02515 tRNA dihydrouridine synthase DusB insig. 36 73
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB insig. 36 73
  Ralstonia solanacearum UW163 UW163_RS01890 tRNA dihydrouridine synthase DusB insig. 36 73
  Alteromonas macleodii MIT1002 MIT1002_03957 putative tRNA-dihydrouridine synthase sig. 35 72
  Ralstonia sp. UNC404CL21Col ABZR87_RS07650 tRNA dihydrouridine synthase DusB insig. 35 72
  Synechococcus elongatus PCC 7942 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 insig. 36 79
  Bifidobacterium breve UCC2003 BBR_RS17165 tRNA dihydrouridine synthase DusB sig. 34 75
  Klebsiella michiganensis M5al BWI76_RS25565 tRNA dihydrouridine synthase DusB no data 33 97
  Ralstonia solanacearum PSI07 RPSI07_RS21520 tRNA dihydrouridine synthase DusB insig. 35 72
  Shewanella amazonensis SB2B Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) strong 34 73
  Magnetospirillum magneticum AMB-1 AMB_RS11940 tRNA dihydrouridine synthase DusB insig. 33 82
  Pseudomonas aeruginosa MRSN321 DY961_RS10040 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB sig. 35 73
  Pseudomonas aeruginosa PA14 IKLFDK_29300 tRNA dihydrouridine synthase DusB sig. 35 73
  Pseudomonas aeruginosa PUPa3 DQ20_RS52015 dusB;go_function=catalytic tRNA dihydrouridine synthase DusB sig. 35 73
  Pseudomonas segetis P6 ACVTMO_RS20360 dusB tRNA dihydrouridine synthase DusB sig. 34 73
  Klebsiella pneumoniae MKP103 KDGMDA_06325 tRNA dihydrouridine synthase DusB sig. 32 97
  Klebsiella pneumoniae MRSN742743 KFA93_RS13580 dusB;go_function=tRNA tRNA dihydrouridine synthase DusB strong 32 97
  Sphingobium sp. HT1-2 GFF1150 tRNA-dihydrouridine synthase DusB cofit 33 74
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0140 tRNA-U20-dihydrouridine synthase strong 32 73
  Paraburkholderia sabiae LMG 24235 QEN71_RS26770 tRNA dihydrouridine synthase DusB insig. 34 72
  Azospirillum brasilense Sp245 AZOBR_RS14420 tRNA-dihydrouridine synthase sig. 35 72
  Enterobacter sp. TBS_079 MPMX20_04169 tRNA-dihydrouridine synthase B strong 32 97
  Fusobacterium nucleatum SB010 HUW76_04330 tRNA-dihydrouridine synthase cofit 25 97
  Pseudomonas sp. S08-1 OH686_07610 tRNA-dihydrouridine synthase DusB sig. 33 73