Homologs of Rru_A3693 from Rhodospirillum rubrum S1H

Protein of unknown function UPF0011 (NCBI)
SEED: rRNA small subunit methyltransferase I

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodospirillum rubrum S1H Rru_A3693 Protein of unknown function UPF0011 (NCBI) insig. 100 100
o Rhodopseudomonas palustris CGA009 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 55 93
o Azospirillum sp. SherDot2 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I insig. 56 90
o Magnetospirillum magneticum AMB-1 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 51 93
o Azospirillum brasilense Sp245 AZOBR_RS02155 16S rRNA methyltransferase sig. 57 88
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 54 90
o Sinorhizobium meliloti 1021 SMc00416 hypothetical protein strong 54 91
o Bosea sp. OAE506 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 55 89
o Sphingobium sp. HT1-2 GFF309 '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 cofit 50 91
o Rhizobium sp. OAE497 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 51 91
o Xanthobacter sp. DMC5 GFF2243 Ribosomal RNA small subunit methyltransferase I insig. 52 93
o Agrobacterium fabrum C58 Atu0302 tetrapyrrole methylase family protein strong 49 92
o Caulobacter crescentus NA1000 CCNA_00143 ribosomal RNA small subunit methyltransferase I strong 50 91
o Caulobacter crescentus NA1000 Δfur CCNA_00143 ribosomal RNA small subunit methyltransferase I cofit 50 91
o Synechocystis sp000284455 PCC 6803 SGL_RS09835 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 45 88
o Synechococcus elongatus PCC 7942 Synpcc7942_0174 hypothetical protein strong 45 88
  Desulfovibrio vulgaris Hildenborough JW710 DVU0832 tetrapyrrole methylase family protein (TIGR) insig. 49 74
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase no data 46 91
o Dinoroseobacter shibae DFL-12 Dshi_2831 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) sig. 44 90
o Erwinia amylovora T8 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 42 90
o Lysobacter sp. OAE881 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 45 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0849 probable S-adenosylmethionine-dependent methyltransferase, YraL family strong 46 73
  Cellulophaga baltica 18 M666_RS04330 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 46 71
o Vibrio cholerae E7946 ATCC 55056 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase insig. 41 90
o Escherichia fergusonii Becca EFB2_00677 Ribosomal RNA small subunit methyltransferase I insig. 44 89
o Escherichia coli ECOR38 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 89
o Escherichia coli Nissle 1917 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 89
o Escherichia coli BL21 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent cofit 44 89
o Escherichia coli ECRC100 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 44 89
o Escherichia coli ECRC101 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 44 89
o Escherichia coli ECRC102 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 44 89
o Escherichia coli ECRC98 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 89
o Escherichia coli ECRC99 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase no data 44 89
o Escherichia coli BW25113 b3146 yraL predicted methyltransferase (NCBI) strong 44 89
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I insig. 44 89
o Shewanella oneidensis MR-1 SO0301 hypothetical methyltransferase (NCBI ptt file) sig. 40 88
  Desulfovibrio vulgaris Miyazaki F DvMF_2880 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) insig. 47 76
o Pectobacterium carotovorum WPP14 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 42 90
o Escherichia coli ECOR27 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 89
o Escherichia coli ECRC62 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 44 89
o Rahnella sp. WP5 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 42 89
o Erwinia tracheiphila SCR3 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 41 88
o Shewanella loihica PV-4 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) strong 40 89
o Kangiella aquimarina DSM 16071 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family insig. 39 89
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4371.1 rRNA small subunit methyltransferase I insig. 44 87
o Dickeya dadantii 3937 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 42 89
o Dickeya dianthicola 67-19 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 42 89
o Dickeya dianthicola ME23 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 43 89
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 41 87
o Herbaspirillum seropedicae SmR1 HSERO_RS23345 16S rRNA methyltransferase sig. 43 88
o Marinobacter adhaerens HP15 HP15_554 tetrapyrrole methylase family protein sig. 40 95
o Acinetobacter radioresistens SK82 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I cofit 38 91
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22250 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 71
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 43 71
o Pantoea sp. MT58 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 42 89
o Alteromonas macleodii MIT1002 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I cofit 39 88
o Shewanella sp. ANA-3 Shewana3_3879 hypothetical protein (RefSeq) strong 39 88
o Acinetobacter baumannii LAC-4 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 38 90
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24030 rRNA (cytidine-2'-O-)-methyltransferase strong 45 71
  Shewanella amazonensis SB2B Sama_3353 hypothetical protein (RefSeq) strong 44 72
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 42 89
o Enterobacter sp. TBS_079 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I sig. 43 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 40 71
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 44 88
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17080 rRNA (cytidine-2'-O-)-methyltransferase strong 42 73
o Enterobacter asburiae PDN3 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 42 89
  Phocaeicola dorei CL03T12C01 ABI39_RS09280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 40 71
o Klebsiella pneumoniae MKP103 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 46 71
o Paraburkholderia sabiae LMG 24235 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 42 90
  Bacteroides stercoris CC31F HMPREF1181_RS09565 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 41 72
  Bifidobacterium breve UCC2003 BBR_RS19915 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 45 70
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1521 rRNA small subunit methyltransferase I insig. 43 88
o Klebsiella michiganensis M5al BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase strong 43 89
  Bacteroides ovatus ATCC 8483 BACOVA_03073 S-adenosylmethionine-dependent methyltransferase, YraL family no data 41 72
  Bacteroides thetaiotaomicron VPI-5482 BT2273 methyltransferase (NCBI ptt file) no data 41 72
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 44 97
o Ralstonia solanacearum UW163 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 97
  Fusobacterium nucleatum SB010 HUW76_04235 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 38 76
o Serratia liquefaciens MT49 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 43 89
o Mycobacterium tuberculosis H37Rv Rv1003 Conserved protein insig. 44 88
o Ralstonia solanacearum PSI07 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 45 94
o Ralstonia sp. UNC404CL21Col ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 44 94
o Burkholderia phytofirmans PsJN BPHYT_RS01940 16S rRNA methyltransferase sig. 44 90
o Pseudomonas segetis P6 ACVTMO_RS18925 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 40 88
o Dechlorosoma suillum PS Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family cofit 41 88
o Phaeobacter inhibens DSM 17395 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family sig. 46 91
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 45 71
  Rhodanobacter sp. FW510-T8 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase sig. 44 73
o Rhodanobacter denitrificans MT42 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 45 71
o Ralstonia solanacearum GMI1000 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 46 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase sig. 43 92
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase strong 45 71
o Pseudomonas sp. SVBP6 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase insig. 39 92
o Pseudomonas syringae pv. syringae B728a Psyr_4112 Protein of unknown function UPF0011 sig. 38 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4112 Protein of unknown function UPF0011 strong 38 88
o Pseudomonas stutzeri RCH2 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family insig. 40 88
o Pseudomonas sp. S08-1 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase cofit 41 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I cofit 38 90
o Pseudomonas simiae WCS417 PS417_04590 methyltransferase strong 37 90
o Pseudomonas sp. DMC3 GFF4428 Ribosomal RNA small subunit methyltransferase I cofit 37 90