Conservation of cofitness between CSW01_13250 and CSW01_00635 in Vibrio cholerae E7946 ATCC 55056

117 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13250 aspartate aminotransferase family protein 1.0 CSW01_00635 diaminopimelate decarboxylase 0.46 8
Shewanella sp. ANA-3 0.72 Shewana3_0610 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.70 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.87 23
Shewanella oneidensis MR-1 0.72 SO0617 argD acetylornithine aminotransferase (NCBI ptt file) 0.69 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.76 8
Alteromonas macleodii MIT1002 0.71 MIT1002_00437 Succinylornithine transaminase/acetylornithine aminotransferase 0.67 MIT1002_00160 Diaminopimelate decarboxylase 0.83 59
Shewanella amazonensis SB2B 0.71 Sama_1628 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.64 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Shewanella loihica PV-4 0.70 Shew_0578 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) 0.68 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.70 40
Pseudomonas sp. BP01 0.66 JOY50_RS00980 aspartate aminotransferase family protein 0.62 JOY50_RS22595 lysA diaminopimelate decarboxylase low > 84
Pseudomonas sp. SVBP6 0.66 COO64_RS21615 aspartate aminotransferase family protein 0.63 COO64_RS01255 lysA diaminopimelate decarboxylase low > 93
Pseudomonas putida KT2440 0.66 PP_4481 Succinylornithine transaminase/acetylornithine aminotransferase 0.65 PP_5227 diaminopimelate decarboxylase low > 96
Pseudomonas aeruginosa PA14 0.65 IKLFDK_03985 Succinylornithine transaminase/acetylornithine aminotransferase 0.67 IKLFDK_27065 diaminopimelate decarboxylase low > 100
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme 0.66 Psyr_0182 diaminopimelate decarboxylase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme 0.66 Psyr_0182 diaminopimelate decarboxylase
Pectobacterium carotovorum WPP14 0.65 HER17_RS01910 aspartate aminotransferase family protein 0.16 HER17_RS03710 diaminopimelate decarboxylase 0.69 71
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13505_RS21625 aspartate aminotransferase family protein 0.17 PagCFBP13505_RS17110 diaminopimelate decarboxylase low > 74
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_5665 Succinylornithine transaminase (EC 2.6.1.81) 0.66 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20)
Erwinia amylovora T8 0.64 OLJFJH_04030 bifunctional succinylornithine transaminase/acetylornithine transaminase 0.19 OLJFJH_08880 diaminopimelate decarboxylase 0.96 9
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_2221 acetylornithine and succinylornithine transaminases/succinylornithine transaminase family 0.19 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1971 Succinylornithine transaminase (EC 2.6.1.81) 0.66 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Pseudomonas stutzeri RCH2 0.64 Psest_2719 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family 0.64 Psest_3764 diaminopimelate decarboxylase
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_04485 Succinylornithine transaminase/acetylornithine aminotransferase 0.65 GEMAOFIL_05654 Diaminopimelate decarboxylase low > 93
Serratia liquefaciens MT49 0.64 IAI46_23590 aspartate aminotransferase family protein 0.19 IAI46_20520 diaminopimelate decarboxylase low > 86
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_18725 acetylornithine aminotransferase 0.66 AO356_12740 diaminopimelate decarboxylase
Rahnella sp. WP5 0.64 EX31_RS04630 aspartate aminotransferase family protein 0.22 EX31_RS02420 type III PLP-dependent enzyme low > 89
Pseudomonas sp. S08-1 0.64 OH686_21290 Succinylornithine transaminase 0.64 OH686_13800 diaminopimelate decarboxylase low > 80
Pantoea sp. MT58 0.64 IAI47_01955 aspartate aminotransferase family protein 0.17 IAI47_03860 diaminopimelate decarboxylase 0.70 37
Dickeya dadantii 3937 0.64 DDA3937_RS19450 aspartate aminotransferase family protein 0.22 DDA3937_RS20740 type III PLP-dependent enzyme low > 74
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS23315 aspartate aminotransferase family protein 0.64 PFLU_RS29265 diaminopimelate decarboxylase
Pseudomonas sp. DMC3 0.64 GFF4879 Succinylornithine transaminase/acetylornithine aminotransferase 0.66 GFF367 Diaminopimelate decarboxylase
Pseudomonas fluorescens SBW25 0.64 PFLU_RS23315 aspartate aminotransferase family protein 0.64 PFLU_RS29265 diaminopimelate decarboxylase 0.65 109
Pseudomonas simiae WCS417 0.63 PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data) 0.64 PS417_27580 diaminopimelate decarboxylase
Pseudomonas segetis P6 0.63 MPMX49_03207 Succinylornithine transaminase/acetylornithine aminotransferase 0.65 MPMX49_04533 Diaminopimelate decarboxylase 0.67 7
Dickeya dianthicola 67-19 0.63 HGI48_RS19570 aspartate aminotransferase family protein 0.21 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS20655 aspartate aminotransferase family protein 0.21 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data) 0.66 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20)
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS23375 aspartate aminotransferase family protein 0.59 QEN71_RS28080 diaminopimelate decarboxylase
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_12105 astC bifunctional succinylornithine transaminase/acetylornithine transaminase 0.17 IJEDHG_17035 lysA diaminopimelate decarboxylase 0.63 45
Erwinia tracheiphila SCR3 0.63 LU632_RS22810 aspartate aminotransferase family protein 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Escherichia fergusonii Becca 0.63 EFB2_00463 Acetylornithine/succinyldiaminopimelate aminotransferase 0.18 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli Nissle 1917 0.63 ECOLIN_RS19240 bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 ECOLIN_RS15930 diaminopimelate decarboxylase low > 55
Escherichia coli BL21 0.63 ECD_03210 bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase 0.18 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.54 16
Paraburkholderia graminis OAS925 0.63 ABIE53_001769 succinylornithine aminotransferase 0.57 ABIE53_003749 diaminopimelate decarboxylase low > 113
Escherichia coli BW25113 0.63 b3359 argD bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.47 17
Escherichia coli ECOR27 0.63 NOLOHH_09030 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.49 53
Escherichia coli ECOR38 0.63 HEPCGN_16055 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.47 33
Escherichia coli ECRC102 0.63 NIAGMN_15000 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.72 62
Escherichia coli ECRC101 0.63 MCAODC_07760 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 MCAODC_10470 lysA diaminopimelate decarboxylase low > 88
Escherichia coli ECRC100 0.63 OKFHMN_17230 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.80 62
Escherichia coli ECRC99 0.63 KEDOAH_10910 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 KEDOAH_08185 lysA diaminopimelate decarboxylase
Escherichia coli ECRC98 0.63 JDDGAC_20860 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 87
Pseudomonas sp. RS175 0.63 PFR28_03283 Succinylornithine transaminase/acetylornithine aminotransferase 0.66 PFR28_04375 Diaminopimelate decarboxylase
Escherichia coli ECRC62 0.63 BNILDI_02490 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_06478 succinylornithine aminotransferase apoenzyme 0.56 H281DRAFT_05606 diaminopimelate decarboxylase
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_03025 acetylornithine aminotransferase 0.65 AO353_09035 diaminopimelate decarboxylase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_00343 Acetylornithine/succinyldiaminopimelate aminotransferase 0.18 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 74
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS07695 acetylornithine aminotransferase 0.57 BPHYT_RS17930 diaminopimelate decarboxylase
Enterobacter asburiae PDN3 0.62 EX28DRAFT_4170 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase 0.70 31
Klebsiella pneumoniae MKP103 0.62 KDGMDA_06830 bifunctional succinylornithine transaminase/acetylornithine transaminase 0.19 KDGMDA_03935 diaminopimelate decarboxylase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3710 Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) 0.19 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Enterobacter sp. TBS_079 0.62 MPMX20_04262 Acetylornithine/succinyldiaminopimelate aminotransferase 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.50 74
Klebsiella michiganensis M5al 0.61 BWI76_RS26000 aspartate aminotransferase family protein 0.18 BWI76_RS23360 diaminopimelate decarboxylase 0.59 68
Acinetobacter baumannii LAC-4 0.61 RR41_RS01860 aspartate aminotransferase family protein 0.62 RR41_RS04435 diaminopimelate decarboxylase low > 55
Marinobacter adhaerens HP15 0.61 HP15_3042 acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) 0.72 HP15_247 diaminopimelate decarboxylase
Acinetobacter radioresistens SK82 0.60 MPMX26_02251 Succinylornithine transaminase 0.61 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Rhodanobacter denitrificans MT42 0.45 LRK55_RS06335 acetylornithine/succinylornithine family transaminase 0.36 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS17400 acetylornithine transaminase 0.38 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS17420 acetylornithine/succinyldiaminopimelate transaminase 0.35 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS06590 acetylornithine/succinylornithine family transaminase 0.36 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS01815 acetylornithine/succinylornithine family transaminase 0.36 LRK53_RS17040 diaminopimelate decarboxylase low > 59
Bosea sp. OAE506 0.43 ABIE41_RS04340 aspartate aminotransferase family protein 0.38 ABIE41_RS08740 diaminopimelate decarboxylase
Agrobacterium fabrum C58 0.42 Atu0428 acetylornithine aminotransferase 0.47 Atu3601 diaminopimelate decarboxylase
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_17070 astC acetylornithine transaminase 0.35 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Rhodopseudomonas palustris CGA009 0.41 TX73_024810 aspartate aminotransferase family protein 0.47 TX73_024635 diaminopimelate decarboxylase
Rhizobium sp. OAE497 0.41 ABIE40_RS02320 aspartate aminotransferase family protein 0.47 ABIE40_RS17530 diaminopimelate decarboxylase 0.94 8
Methanococcus maripaludis JJ 0.40 MMJJ_RS08660 acetylornithine transaminase 0.35 MMJJ_RS08170 diaminopimelate decarboxylase low > 28
Methanococcus maripaludis S2 0.39 MMP_RS05690 acetylornithine transaminase 0.35 MMP_RS06180 diaminopimelate decarboxylase
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase 0.44 CCNA_02296 diaminopimelate decarboxylase
Caulobacter crescentus NA1000 0.39 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase 0.44 CCNA_02296 diaminopimelate decarboxylase
Phaeobacter inhibens DSM 17395 0.39 PGA1_c24230 acetylornithine aminotransferase ArgD 0.48 PGA1_c03470 diaminopimelate decarboxylase LysA
Rhodospirillum rubrum S1H 0.39 Rru_A1147 Acetylornithine and succinylornithine aminotransferase (NCBI) 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI)
Sinorhizobium meliloti 1021 0.39 SMc02138 acetylornithine transaminase 0.48 SMc00723 diaminopimelate DAP decarboxylase
Azospirillum brasilense Sp245 0.38 AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) 0.45 AZOBR_RS16945 diaminopimelate decarboxylase
Azospirillum sp. SherDot2 0.38 MPMX19_02177 Succinylornithine transaminase/acetylornithine aminotransferase 0.46 MPMX19_05819 Diaminopimelate decarboxylase
Magnetospirillum magneticum AMB-1 0.38 AMB_RS01605 aspartate aminotransferase family protein 0.44 AMB_RS22725 diaminopimelate decarboxylase
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_0943 argD acetylornithine aminotransferase 0.22 Synpcc7942_0262 lysA diaminopimelate decarboxylase
Synechocystis sp000284455 PCC 6803 0.37 SGL_RS04875 aspartate aminotransferase family protein 0.21 SGL_RS16710 diaminopimelate decarboxylase
Xanthobacter sp. DMC5 0.37 GFF1808 Succinylornithine transaminase/acetylornithine aminotransferase 0.47 GFF3837 Diaminopimelate decarboxylase
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS11925 aspartate aminotransferase family protein 0.40 A4249_RS12545 diaminopimelate decarboxylase
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3205 transaminase, acetylornithine/succinylornithine family 0.39 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.98 3
Dinoroseobacter shibae DFL-12 0.36 Dshi_0798 acetylornithine and succinylornithine aminotransferase (RefSeq) 0.47 Dshi_3059 diaminopimelate decarboxylase (RefSeq)
Sphingobium sp. HT1-2 0.36 GFF3745 N-acetylornithine aminotransferase (EC 2.6.1.11) 0.45 GFF3795 Diaminopimelate decarboxylase (EC 4.1.1.20)
Dechlorosoma suillum PS 0.35 Dsui_0023 acetylornithine/succinylornithine aminotransferase 0.61 Dsui_1182 diaminopimelate decarboxylase
Ralstonia solanacearum PSI07 0.34 RPSI07_RS12720 acetylornithine transaminase 0.57 RPSI07_RS10250 diaminopimelate decarboxylase
Ralstonia solanacearum GMI1000 0.33 RS_RS12225 aspartate aminotransferase family protein 0.57 RS_RS14930 diaminopimelate decarboxylase
Mycobacterium tuberculosis H37Rv 0.33 Rv1655 Probable acetylornithine aminotransferase ArgD 0.20 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase)
Ralstonia solanacearum UW163 0.33 UW163_RS09005 acetylornithine transaminase 0.58 UW163_RS06625 diaminopimelate decarboxylase
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS04665 acetylornithine transaminase 0.58 RALBFv3_RS06990 diaminopimelate decarboxylase
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS00285 acetylornithine transaminase 0.57 ABZR87_RS02640 diaminopimelate decarboxylase low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS16955 acetylornithine aminotransferase 0.57 RR42_RS19050 diaminopimelate decarboxylase
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS16670 acetylornithine aminotransferase 0.56 HSERO_RS00950 diaminopimelate decarboxylase
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU2347 argD acetylornithine aminotransferase (TIGR) 0.51 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) low > 55
Castellaniella sp019104865 MT123 0.32 ABCV34_RS12095 acetylornithine transaminase 0.56 ABCV34_RS12685 diaminopimelate decarboxylase
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1332 Acetylornithine aminotransferase (EC 2.6.1.11) 0.21 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20)
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_3149 acetylornithine aminotransferase (RefSeq) 0.54 DvMF_0353 diaminopimelate decarboxylase (RefSeq) low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF3420 Acetylornithine aminotransferase (EC 2.6.1.11) 0.51 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Variovorax sp. OAS795 0.31 ABID97_RS08635 aspartate aminotransferase family protein 0.52 ABID97_RS23305 diaminopimelate decarboxylase
Variovorax sp. SCN45 0.30 GFF3927 N-acetylornithine aminotransferase (EC 2.6.1.11) 0.52 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20)
Methylophilus sp. DMC18 0.30 GFF641 Acetylornithine aminotransferase 0.58 GFF2209 Diaminopimelate decarboxylase
Bacteroides ovatus ATCC 8483 0.29 BACOVA_03588 aminotransferase, class III 0.31 BACOVA_00215 diaminopimelate decarboxylase 0.58 64
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS10585 aspartate aminotransferase family protein 0.32 HMPREF1078_RS13545 diaminopimelate decarboxylase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.28 BT3758 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) 0.31 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.69 56
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS03445 aspartate aminotransferase family protein 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.98 8
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS15260 ornithine--oxo-acid transaminase 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS11290 ornithine--oxo-acid transaminase 0.32 ABI39_RS19950 diaminopimelate decarboxylase low > 72
Cellulophaga baltica 18 0.27 M666_RS02640 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme 0.24 M666_RS19040 diaminopimelate decarboxylase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0577 Ornithine aminotransferase (EC 2.6.1.13) (from data) 0.24 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS15500 aspartate aminotransferase family protein 0.31 ABZR88_RS10180 diaminopimelate decarboxylase
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_15645 ornithine--oxo-acid transaminase 0.31 CA264_02390 diaminopimelate decarboxylase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15205 aspartate aminotransferase family protein 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.50 48

Not shown: 2 genomes with orthologs for CSW01_13250 only; 0 genomes with orthologs for CSW01_00635 only