Conservation of cofitness between SO0760 and SO2743 in Shewanella oneidensis MR-1

117 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0760 amt ammonium transporter (NCBI ptt file) 1.0 SO2743 acs acetyl-coenzyme A synthetase (NCBI ptt file) 0.59 10
Shewanella sp. ANA-3 0.98 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) 0.99 Shewana3_2523 acetyl-CoA synthetase (RefSeq) low > 73
Shewanella loihica PV-4 0.90 Shew_0847 Rh family protein/ammonium transporter (RefSeq) 0.91 Shew_1533 acetyl-CoA synthetase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.86 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.89 Sama_2079 acetyl-CoA synthetase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_03200 ammonium transporter 0.73 CSW01_01520 acetyl-coenzyme A synthetase low > 62
Pseudomonas segetis P6 0.64 ACVTMO_RS22540 ammonium transporter 0.74 ACVTMO_RS09280 acs acetate--CoA ligase low > 75
Pseudomonas sp. S08-1 0.64 OH686_13765 Ammonium transporter 0.75 OH686_21250 acetate--CoA ligase low > 80
Pseudomonas stutzeri RCH2 0.63 Psest_3771 probable ammonium transporter, marine subtype 0.70 Psest_2657 acetate--CoA ligase low > 67
Marinobacter adhaerens HP15 0.58 HP15_274 ammonium/methylammonium permease 0.73 HP15_811 acetyl-CoA synthetase low > 73
Alteromonas macleodii MIT1002 0.57 MIT1002_00417 Ammonia transporter 0.66 MIT1002_03516 Acetyl-coenzyme A synthetase low > 70
Phaeobacter inhibens DSM 17395 0.49 PGA1_c29410 ammonium transporter 0.61 PGA1_c12950 acetyl-coenzyme A synthetase Acs low > 62
Dinoroseobacter shibae DFL-12 0.47 Dshi_0144 ammonium transporter (RefSeq) 0.63 Dshi_3553 acetate--CoA ligase (RefSeq) — —
Synechocystis sp000284455 PCC 6803 0.37 SGL_RS15695 ammonium transporter 0.51 SGL_RS15030 acetate--CoA ligase 0.59 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_1454 ammonium transporter 0.52 Echvi_1268 acetate--CoA ligase low > 79
Cellulophaga baltica 18 0.36 M666_RS19300 ammonium transporter 0.50 M666_RS12955 acetate--CoA ligase low > 67
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_0442 amt1 ammonium transporter 0.52 Synpcc7942_1352 acsA acetyl-CoA synthetase low > 38
Bacteroides thetaiotaomicron VPI-5482 0.35 BT0544 ammonium transporter (NCBI ptt file) 0.15 BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06895 ammonium transporter 0.14 HMPREF1058_RS08765 AMP-binding protein low > 67
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS16015 ammonium transporter 0.14 HMPREF1181_RS03430 AMP-binding protein low > 56
Rhodospirillum rubrum S1H 0.28 Rru_A0554 Rh-like protein/ammonium transporter (NCBI) 0.69 Rru_A3575 Acetate--CoA ligase (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_3023 ammonium transporter (RefSeq) 0.54 DvMF_1775 acetate/CoA ligase (RefSeq) low > 51
Variovorax sp. OAS795 0.24 ABID97_RS20920 ammonium transporter 0.46 ABID97_RS17525 acetate--CoA ligase low > 91
Variovorax sp. SCN45 0.24 GFF6676 Ammonium transporter 0.46 GFF475 Acetyl-CoA synthetase (EC 6.2.1.1) low > 127
Methanococcus maripaludis JJ 0.24 MMJJ_RS05110 ammonium transporter 0.42 MMJJ_RS04645 acetate--CoA ligase low > 28
Acidovorax sp. GW101-3H11 0.24 Ac3H11_1462 Ammonium transporter 0.47 Ac3H11_951 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 79
Methanococcus maripaludis S2 0.24 MMP_RS00375 ammonium transporter 0.42 MMP_RS00845 acetate--CoA ligase low > 25
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS11465 ammonium transporter 0.51 ABZR88_RS15400 acetate--CoA ligase low > 71
Acinetobacter radioresistens SK82 0.22 MPMX26_00674 Ammonia channel 0.65 MPMX26_02906 Acetyl-coenzyme A synthetase low > 36
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS23255 ammonium transporter 0.48 QEN71_RS23765 acetate--CoA ligase low > 153
Magnetospirillum magneticum AMB-1 0.22 AMB_RS09935 ammonium transporter 0.69 AMB_RS21140 acetate--CoA ligase low > 64
Paraburkholderia graminis OAS925 0.22 ABIE53_001796 Amt family ammonium transporter 0.48 ABIE53_001664 acetyl-CoA synthetase low > 113
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS07910 ammonium transporter 0.48 BPHYT_RS07000 acetyl-CoA synthetase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_05071 ammonium transporter 0.48 H281DRAFT_04953 acetyl-coenzyme A synthetase low > 103
Acinetobacter baumannii LAC-4 0.21 RR41_RS03785 ammonium transporter 0.65 RR41_RS00965 acetate--CoA ligase low > 55
Dechlorosoma suillum PS 0.21 Dsui_1062 ammonia permease 0.46 Dsui_2003 acetate--CoA ligase low > 51
Serratia liquefaciens MT49 0.21 IAI46_05085 ammonium transporter AmtB 0.69 IAI46_01405 acetate--CoA ligase low > 87
Enterobacter sp. TBS_079 0.20 MPMX20_01043 Ammonia channel 0.71 MPMX20_00291 Acetyl-coenzyme A synthetase low > 85
Enterobacter asburiae PDN3 0.20 EX28DRAFT_2518 ammonium transporter 0.71 EX28DRAFT_4232 acetate--CoA ligase low > 76
Pseudomonas lactucae CFBP13502 0.20 GEMAOFIL_01859 Ammonia channel 0.73 GEMAOFIL_04492 Acetyl-coenzyme A synthetase low > 96
Methylophilus sp. DMC18 0.20 GFF105 Ammonia channel 0.47 GFF994 Acetyl-coenzyme A synthetase low > 43
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS28950 ammonium transporter 0.49 RR42_RS13880 AMP-dependent synthetase low > 128
Pectobacterium carotovorum WPP14 0.20 HER17_RS15785 ammonium transporter AmtB 0.72 HER17_RS17630 acetate--CoA ligase low > 75
Pseudomonas simiae WCS417 0.20 PS417_08635 ammonium transporter 0.73 PS417_21750 acetyl-CoA synthetase low > 88
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS02900 ammonium transporter 0.47 HSERO_RS07770 acetyl-CoA synthetase low > 78
Pseudomonas orientalis W4I3 0.20 QF045_RS11350 ammonium transporter 0.73 QF045_RS23855 acetate--CoA ligase low > 93
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4368 Ammonium transporter 0.71 GFF1452 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 78
Pseudomonas fluorescens SBW25 0.20 PFLU_RS08590 ammonium transporter 0.73 PFLU_RS23355 acetate--CoA ligase low > 109
Klebsiella pneumoniae MKP103 0.20 KDGMDA_14685 ammonium transporter AmtB 0.71 KDGMDA_10565 acetate--CoA ligase low > 95
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS08590 ammonium transporter 0.73 PFLU_RS23355 acetate--CoA ligase low > 109
Rahnella sp. WP5 0.20 EX31_RS22320 ammonium transporter AmtB 0.69 EX31_RS09040 acetate--CoA ligase low > 89
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_19220 ammonium transporter 0.73 AO353_03060 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) low > 101
Klebsiella michiganensis M5al 0.19 BWI76_RS06605 ammonium transporter 0.71 BWI76_RS02095 acetyl-coenzyme A synthetase low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2267 Ammonium transporter 0.73 PfGW456L13_1963 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 87
Escherichia fergusonii Becca 0.19 EFB2_03606 Ammonia channel 0.72 EFB2_04520 Acetyl-coenzyme A synthetase low > 86
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU1231 amt ammonium transporter (TIGR) 0.53 DVU2969 acetoacetyl-CoA synthase (TIGR) low > 55
Escherichia coli Nissle 1917 0.19 ECOLIN_RS02700 ammonium transporter AmtB 0.72 ECOLIN_RS23550 acetate--CoA ligase low > 55
Escherichia coli ECRC100 0.19 OKFHMN_08260 amtB ammonium transporter AmtB 0.72 OKFHMN_12830 acs acetate--CoA ligase low > 79
Escherichia coli ECRC98 0.19 JDDGAC_11915 amtB ammonium transporter AmtB 0.72 JDDGAC_16465 acs acetate--CoA ligase low > 87
Escherichia coli ECOR38 0.19 HEPCGN_06875 amtB ammonium transporter AmtB 0.73 HEPCGN_11455 acs acetate--CoA ligase low > 88
Escherichia coli ECRC101 0.19 MCAODC_27485 amtB ammonium transporter AmtB 0.72 MCAODC_03340 acs acetate--CoA ligase low > 87
Escherichia coli ECOR27 0.19 NOLOHH_01195 amtB ammonium transporter AmtB 0.73 NOLOHH_05080 acs acetate--CoA ligase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03222 Ammonia channel 0.73 OHPLBJKB_03971 Acetyl-coenzyme A synthetase low > 74
Escherichia coli BL21 0.19 ECD_00403 ammonium transporter 0.73 ECD_03941 acetyl-CoA synthetase low > 61
Escherichia coli ECRC102 0.19 NIAGMN_06315 amtB ammonium transporter AmtB 0.72 NIAGMN_10675 acs acetate--CoA ligase low > 80
Escherichia coli BW25113 0.19 b0451 amtB ammonium transporter (NCBI) 0.73 b4069 acs acetyl-coenzyme A synthetase (NCBI) low > 76
Erwinia amylovora T8 0.19 OLJFJH_17905 ammonium transporter AmtB 0.70 OLJFJH_03335 acetate--CoA ligase low > 58
Escherichia coli ECRC62 0.19 BNILDI_22610 amtB ammonium transporter AmtB 0.73 BNILDI_06445 acs acetate--CoA ligase low > 75
Escherichia coli ECRC99 0.19 KEDOAH_19705 amtB ammonium transporter AmtB 0.72 KEDOAH_15320 acs acetate--CoA ligase — —
Erwinia tracheiphila HP pepo 2.2 0.19 IJEDHG_16515 amtB ammonium transporter AmtB 0.70 IJEDHG_11295 acs acetate--CoA ligase low > 61
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS06040 ammonium transporter 0.48 ABZR87_RS14360 acetate--CoA ligase low > 80
Erwinia tracheiphila SCR3 0.19 LU632_RS18270 amtB ammonium transporter AmtB 0.70 LU632_RS23305 acs acetate--CoA ligase low > 73
Pedobacter sp. GW460-11-11-14-LB5 0.19 CA265_RS14975 ammonia channel protein 0.54 CA265_RS16340 acetate--CoA ligase low > 88
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2430 Ammonium transporter 0.73 Pf6N2E2_5659 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 103
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS10615 ammonium transporter AmtB 0.70 PagCFBP13505_RS21040 acetate--CoA ligase low > 74
Pantoea sp. MT58 0.19 IAI47_14580 ammonium transporter AmtB 0.70 IAI47_17715 acetate--CoA ligase low > 76
Pseudomonas sp. DMC3 0.18 GFF4581 Ammonia channel 0.73 GFF4887 Acetyl-coenzyme A synthetase low > 89
Pseudomonas sp. SVBP6 0.18 COO64_RS05245 ammonium transporter 0.75 COO64_RS21645 acs acetate--CoA ligase low > 93
Azospirillum sp. SherDot2 0.18 MPMX19_01885 Ammonia channel 0.68 MPMX19_02038 Acetyl-coenzyme A synthetase low > 112
Dickeya dianthicola ME23 0.18 DZA65_RS06070 ammonium transporter AmtB 0.71 DZA65_RS03695 acetate--CoA ligase low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS05745 ammonium transporter AmtB 0.71 HGI48_RS03580 acetate--CoA ligase low > 71
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_243 Ammonium transporter 0.73 Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 87
Lysobacter sp. OAE881 0.18 ABIE51_RS01435 ammonium transporter 0.65 ABIE51_RS01660 acetate--CoA ligase low > 62
Pseudomonas sp. RS175 0.18 PFR28_00998 Ammonia channel 0.74 PFR28_03289 Acetyl-coenzyme A synthetase low > 88
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_03020 ammonium transporter 0.74 AO356_18695 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) low > 104
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS09495 ammonium transporter 0.67 ABZR86_RS15200 acetate--CoA ligase low > 74
Pseudomonas putida KT2440 0.18 PP_2106 putative Ammonium transporter 0.75 PP_4487 acetyl-CoA synthetase low > 96
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.249.1 Ammonium transporter 0.66 Xcc-8004.5157.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 74
Rhodopseudomonas palustris CGA009 0.18 TX73_001425 ammonium transporter 0.68 TX73_001095 acetate--CoA ligase low > 86
Pseudomonas aeruginosa PUPa3 0.18 DQ20_RS33815 ammonium transporter 0.74 DQ20_RS44765 acs;go_function=acetate-CoA acetate--CoA ligase low > 101
Pseudomonas aeruginosa PA14 0.18 IKLFDK_15465 ammonium transporter 0.74 IKLFDK_03940 acetate--CoA ligase low > 98
Pseudomonas aeruginosa MRSN321 0.18 DY961_RS01760 ammonium transporter 0.74 DY961_RS08035 acs;go_function=acetate-CoA acetate--CoA ligase low > 100
Pseudomonas sp. BP01 0.18 JOY50_RS22045 ammonium transporter 0.75 JOY50_RS01010 acs acetate--CoA ligase low > 84
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS09990 ammonium transporter 0.63 A4249_RS15190 acetate--CoA ligase low > 48
Azospirillum brasilense Sp245 0.17 AZOBR_RS00845 ammonia channel protein 0.69 AZOBR_RS00270 acetyl-CoA synthetase low > 97
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_2277 ammonium transporter 0.74 Psyr_3572 acetyl-coenzyme A synthetase low > 86
Rhizobium sp. OAE497 0.16 ABIE40_RS18420 ammonium transporter 0.66 ABIE40_RS19160 acetate--CoA ligase low > 107
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_2277 ammonium transporter 0.74 Psyr_3572 acetyl-coenzyme A synthetase low > 86
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2256 ammonium transporter 0.63 Ga0059261_1313 acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 68
Dickeya dadantii 3937 0.16 DDA3937_RS05700 ammonium transporter AmtB 0.71 DDA3937_RS03480 acetate--CoA ligase low > 74
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS10850 ammonia channel protein 0.47 RALBFv3_RS02445 acetate--CoA ligase low > 76
Ralstonia solanacearum UW163 0.16 UW163_RS02730 ammonia channel protein 0.47 UW163_RS11280 acetate--CoA ligase — —
Ralstonia solanacearum PSI07 0.16 RPSI07_RS22460 ammonia channel protein 0.47 RPSI07_RS14880 acetate--CoA ligase low > 81
Ralstonia solanacearum GMI1000 0.16 RS_RS01690 ammonium transporter 0.48 RS_RS09815 acetyl-coenzyme A synthetase low > 80
Sinorhizobium meliloti 1021 0.15 SMc03807 ammonium transporter 0.66 SMc04093 acetyl-CoA synthetase low > 103
Castellaniella sp019104865 MT123 0.15 ABCV34_RS04770 ammonium transporter 0.48 ABCV34_RS00680 acetate--CoA ligase low > 48
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03766 ammonium transporter 0.15 BACOVA_03585 AMP-binding enzyme low > 96
Caulobacter crescentus NA1000 0.15 CCNA_01399 ammonium transporter/methylammonium transporter 0.64 CCNA_03696 acetyl-coenzyme A synthetase low > 66
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_01399 ammonium transporter/methylammonium transporter 0.64 CCNA_03696 acetyl-coenzyme A synthetase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF1892 Ammonium transporter 0.47 GFF4107 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 90
Sphingobium sp. HT1-2 0.15 GFF785 Ammonium transporter 0.63 GFF2775 Acetyl-CoA synthetase (EC 6.2.1.1) low > 95
Mycobacterium tuberculosis H37Rv 0.14 Rv2920c Probable ammonium-transport integral membrane protein Amt 0.44 Rv3667 Acetyl-coenzyme A synthetase Acs (acetate--CoA ligase) (acetyl-CoA synthetase) (acetyl-CoA synthase) (acyl-activating enzyme) (acetate thiokinase) (acetyl-activating enzyme) (acetate--coenzyme A ligase) (acetyl-coenzyme A synthase) low > 58
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08110 ammonium transporter 0.66 LRK54_RS08420 acetate--CoA ligase low > 59
Rhodanobacter denitrificans MT42 0.14 LRK55_RS07860 ammonium transporter 0.66 LRK55_RS08185 acetate--CoA ligase low > 63
Bosea sp. OAE506 0.14 ABIE41_RS04755 ammonium transporter 0.67 ABIE41_RS05675 acetate--CoA ligase low > 77
Rhodanobacter sp000427505 FW510-R12 0.14 LRK53_RS00315 ammonium transporter 0.66 LRK53_RS00080 acetate--CoA ligase low > 59
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_14925 Ammonium transporter 0.64 OKGIIK_15190 acs acetate--CoA ligase low > 53
Agrobacterium fabrum C58 0.13 Atu2758 ammonium transporter 0.67 Atu2745 acetyl-coenzyme A synthetase low > 89
Xanthobacter sp. DMC5 0.13 GFF3985 Ammonia channel 0.68 GFF160 Acetyl-coenzyme A synthetase — —

Not shown: 3 genomes with orthologs for SO0760 only; 2 genomes with orthologs for SO2743 only