Conservation of cofitness between SO3462 and SO2015 in Shewanella oneidensis MR-1

114 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO3462 recN DNA repair protein RecN (NCBI ptt file) 1.0 SO2015 recR recombination protein RecR (NCBI ptt file) 0.65 2
Shewanella sp. ANA-3 0.97 Shewana3_1104 recombination and repair protein (RefSeq) 0.99 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.71 8
Shewanella amazonensis SB2B 0.81 Sama_1026 recombination and repair protein (RefSeq) 0.84 Sama_1312 recR recombination protein RecR (RefSeq) 0.61 10
Shewanella loihica PV-4 0.77 Shew_1196 recombination and repair protein (RefSeq) 0.90 Shew_2233 recombination protein RecR (RefSeq) low > 60
Rahnella sp. WP5 0.55 EX31_RS21760 DNA repair protein RecN 0.67 EX31_RS22525 recombination protein RecR low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4162 DNA repair protein RecN 0.66 GFF4390 Recombination protein RecR 0.57 18
Escherichia coli BL21 0.55 ECD_02504 recombination and repair protein 0.66 ECD_00423 gap repair protein low > 61
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_04395 DNA repair protein RecN 0.67 CSW01_05375 recombination protein RecR 0.48 8
Escherichia fergusonii Becca 0.55 EFB2_01277 DNA repair protein RecN 0.66 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC102 0.55 NIAGMN_18915 recN DNA repair protein RecN 0.66 NIAGMN_06210 recR recombination mediator RecR low > 80
Escherichia coli ECOR27 0.55 NOLOHH_12815 recN DNA repair protein RecN 0.66 NOLOHH_01085 recR recombination mediator RecR low > 76
Escherichia coli ECOR38 0.55 HEPCGN_20265 recN DNA repair protein RecN 0.66 HEPCGN_06770 recR recombination mediator RecR 0.38 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01091 DNA repair protein RecN 0.66 OHPLBJKB_03202 Recombination protein RecR low > 74
Escherichia coli ECRC99 0.55 KEDOAH_07075 recN DNA repair protein RecN 0.66 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli BW25113 0.55 b2616 recN recombination and repair protein (NCBI) 0.66 b0472 recR recombination protein RecR (NCBI) 0.52 7
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14775 DNA repair protein RecN 0.66 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli ECRC100 0.55 OKFHMN_21145 recN DNA repair protein RecN 0.66 OKFHMN_08155 recR recombination mediator RecR low > 79
Escherichia coli ECRC62 0.55 BNILDI_11620 recN DNA repair protein RecN 0.66 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli ECRC101 0.55 MCAODC_11670 recN DNA repair protein RecN 0.66 MCAODC_27380 recR recombination mediator RecR low > 88
Escherichia coli ECRC98 0.55 JDDGAC_24810 recN DNA repair protein RecN 0.66 JDDGAC_11805 recR recombination mediator RecR low > 87
Erwinia amylovora T8 0.55 OLJFJH_10175 DNA repair protein RecN 0.66 OLJFJH_17805 recombination mediator RecR low > 58
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS14700 DNA repair protein RecN 0.66 PagCFBP13505_RS10730 recombination protein RecR low > 74
Pantoea sp. MT58 0.54 IAI47_04810 DNA repair protein RecN 0.66 IAI47_14465 recombination protein RecR low > 76
Klebsiella pneumoniae MKP103 0.54 KDGMDA_02250 DNA repair protein RecN 0.65 KDGMDA_14890 recombination mediator RecR low > 95
Dickeya dadantii 3937 0.54 DDA3937_RS04325 DNA repair protein RecN 0.66 DDA3937_RS05790 recombination protein RecR low > 74
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2719 DNA repair protein RecN 0.66 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Serratia liquefaciens MT49 0.54 IAI46_19635 DNA repair protein RecN 0.66 IAI46_05240 recombination protein RecR 0.49 15
Klebsiella michiganensis M5al 0.54 BWI76_RS21560 DNA repair protein RecN 0.65 BWI76_RS06830 recombination protein RecR low > 92
Enterobacter sp. TBS_079 0.53 MPMX20_03486 DNA repair protein RecN 0.66 MPMX20_01074 Recombination protein RecR low > 85
Dickeya dianthicola 67-19 0.53 HGI48_RS04320 DNA repair protein RecN 0.65 HGI48_RS05840 recombination protein RecR — —
Dickeya dianthicola ME23 0.53 DZA65_RS04235 DNA repair protein RecN 0.65 DZA65_RS06165 recombination protein RecR low > 75
Pectobacterium carotovorum WPP14 0.52 HER17_RS17420 DNA repair protein RecN 0.67 HER17_RS15695 recombination mediator RecR 0.66 4
Erwinia tracheiphila SCR3 0.52 LU632_RS16985 recN DNA repair protein RecN 0.66 LU632_RS18105 recR recombination mediator RecR low > 74
Erwinia tracheiphila HP pepo 2.2 0.52 IJEDHG_26925 recN DNA repair protein RecN 0.66 IJEDHG_16645 recR recombination mediator RecR low > 61
Alteromonas macleodii MIT1002 0.45 MIT1002_01443 Recombination protein N 0.64 MIT1002_02649 Recombination protein RecR low > 70
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_5106 DNA repair protein RecN 0.58 PfGW456L13_4074 Recombination protein RecR 0.30 55
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1178 DNA repair protein RecN 0.58 Pf1N1B4_3864 Recombination protein RecR 0.43 3
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3370 DNA repair protein RecN 0.59 Pf6N2E2_2325 Recombination protein RecR 0.69 3
Marinobacter adhaerens HP15 0.42 HP15_3084 DNA repair protein RecN 0.61 HP15_1883 recombination protein RecR — —
Pseudomonas sp. S08-1 0.42 OH686_17050 DNA repair protein RecN 0.58 OH686_02385 recombination protein RecR low > 80
Pseudomonas sp. DMC3 0.42 GFF4971 DNA repair protein RecN 0.59 GFF708 Recombination protein RecR low > 89
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29775 DNA repair protein RecN 0.59 IKLFDK_07325 recombination mediator RecR low > 100
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4197 DNA replication and repair protein RecN 0.58 Psyr_3396 DNA replication and repair protein RecR 0.46 18
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4197 DNA replication and repair protein RecN 0.58 Psyr_3396 DNA replication and repair protein RecR 0.40 11
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05660 DNA repair protein RecN 0.58 AO353_00675 recombination protein RecR 0.43 19
Pseudomonas sp. RS175 0.41 PFR28_00071 DNA repair protein RecN 0.59 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07510 DNA repair protein RecN 0.58 AO356_02495 recombination protein RecR 0.74 8
Pseudomonas sp. SVBP6 0.41 COO64_RS15270 recN DNA repair protein RecN 0.58 COO64_RS18630 recR recombination mediator RecR low > 93
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04964 DNA repair protein RecN 0.59 GEMAOFIL_04304 Recombination protein RecR low > 93
Pseudomonas simiae WCS417 0.41 PS417_24070 recombination and repair protein 0.59 PS417_20800 recombination protein RecR 0.44 8
Pseudomonas fluorescens SBW25 0.40 PFLU_RS25910 DNA repair protein RecN 0.59 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS25910 DNA repair protein RecN 0.59 PFLU_RS22415 recombination protein RecR 0.26 29
Pseudomonas stutzeri RCH2 0.40 Psest_0962 DNA repair protein RecN 0.58 Psest_2545 recombination protein RecR 0.59 7
Pseudomonas putida KT2440 0.39 PP_4729 factor used in recombination and DNA repair 0.58 PP_4267 Recombination protein RecR low > 96
Pseudomonas sp. BP01 0.39 JOY50_RS26735 recN DNA repair protein RecN 0.59 JOY50_RS00135 recR recombination mediator RecR low > 84
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0601 DNA replication and repair protein RecN 0.59 B158DRAFT_2480 DNA replication and repair protein RecR 0.59 16
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS03060 DNA repair protein 0.46 HSERO_RS18355 recombinase RecR 0.38 8
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.53 Dsui_1811 recombination protein RecR 0.91 3
Lysobacter sp. OAE881 0.35 ABIE51_RS11655 DNA repair protein RecN 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.46 QEN71_RS22285 recombination mediator RecR 0.43 34
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05665 DNA repair protein RecN 0.61 ABZR86_RS06235 recombination mediator RecR 0.49 58
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3431.1 DNA repair protein RecN 0.53 Xcc-8004.4012.1 Recombination protein RecR low > 74
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11400 DNA repair protein RecN 0.62 LRK53_RS08825 recombination mediator RecR low > 59
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01065 DNA repair protein RecN 0.47 ABZR87_RS10810 recombination mediator RecR low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS13275 DNA repair protein RecN 0.45 RS_RS05980 recombination protein RecR low > 80
Ralstonia solanacearum UW163 0.34 UW163_RS08210 DNA repair protein RecN 0.45 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05415 DNA repair protein RecN 0.45 RALBFv3_RS15170 recombination protein RecR low > 76
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07340 recN DNA repair protein RecN 0.62 OKGIIK_05655 recR recombination mediator RecR low > 52
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11890 DNA repair protein RecN 0.45 RPSI07_RS18205 recombination protein RecR low > 81
Methylophilus sp. DMC18 0.33 GFF306 DNA repair protein RecN 0.50 GFF1237 Recombination protein RecR low > 43
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.62 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.62 LRK55_RS01020 recombination mediator RecR low > 63
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3460 DNA repair protein RecN 0.41 Ac3H11_473 Recombination protein RecR low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.47 GFF1110 Recombination protein RecR low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.45 GFF4253 Recombination protein RecR low > 90
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS05910 DNA repair protein 0.48 RR42_RS13270 recombination protein RecR 0.62 7
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04692 DNA replication and repair protein RecN 0.47 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.46 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia graminis OAS925 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.46 ABIE53_002048 recombination protein RecR 0.33 10
Castellaniella sp019104865 MT123 0.30 ABCV34_RS07470 DNA repair protein RecN 0.42 ABCV34_RS15480 recombination mediator RecR low > 48
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS02000 DNA repair protein RecN 0.36 HMPREF1078_RS07615 recombination mediator RecR low > 61
Acinetobacter baumannii LAC-4 0.28 RR41_RS17380 DNA repair protein RecN 0.51 RR41_RS12660 recombination mediator RecR low > 55
Acinetobacter radioresistens SK82 0.28 MPMX26_00239 DNA repair protein RecN 0.53 MPMX26_01643 Recombination protein RecR 0.43 4
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS06580 DNA repair protein RecN 0.38 ABZR88_RS10695 recombination mediator RecR low > 71
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.38 SMc02908 recombination protein RecR 0.65 7
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.35 Echvi_1987 recombination protein RecR 0.67 14
Bosea sp. OAE506 0.27 ABIE41_RS12645 DNA repair protein RecN 0.33 ABIE41_RS04035 recombination mediator RecR — —
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.33 BT1081 recombination protein recR (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10900 DNA repair protein RecN 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.37 Atu0093 Recombination protein 0.48 5
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.33 ABI39_RS14870 recombination protein RecR low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS18225 DNA repair protein RecN 0.33 HMPREF1058_RS18560 recombination protein RecR low > 67
Sphingobium sp. HT1-2 0.25 GFF2340 DNA repair protein RecN 0.36 GFF2663 Recombination protein RecR low > 95
Azospirillum sp. SherDot2 0.25 MPMX19_01601 DNA repair protein RecN 0.36 MPMX19_02195 Recombination protein RecR 0.49 42
Magnetospirillum magneticum AMB-1 0.25 AMB_RS19520 DNA repair protein RecN 0.36 AMB_RS20755 recombination protein RecR — —
Azospirillum brasilense Sp245 0.25 AZOBR_RS12395 DNA repair protein RecN 0.37 AZOBR_RS03880 recombinase RecR — —
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.38 Ga0059261_0645 DNA replication and repair protein RecR 0.30 27
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS14855 DNA repair protein RecN 0.36 CA265_RS04980 recombination protein RecR 0.78 7
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.32 PGA1_c30290 recombination protein RecR 0.50 5
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.38 HUW76_08785 recombination protein RecR low > 35
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.39 Rru_A3471 RecR protein (NCBI) — —
Xanthobacter sp. DMC5 0.23 GFF2252 DNA repair protein RecN 0.36 GFF3747 Recombination protein RecR — —
Rhodopseudomonas palustris CGA009 0.23 TX73_018240 DNA repair protein RecN 0.38 TX73_003195 recombination mediator RecR — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_13235 DNA repair protein RecN 0.36 CA264_01105 recombination protein RecR 0.55 18
Cellulophaga baltica 18 0.23 M666_RS17655 DNA repair protein RecN 0.35 M666_RS09385 recombination mediator RecR low > 67
Dinoroseobacter shibae DFL-12 0.23 Dshi_2413 DNA repair protein RecN (RefSeq) 0.35 Dshi_0648 recombination protein RecR (RefSeq) 0.48 6
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.31 A4249_RS15115 recombination mediator RecR low > 48
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.36 CCNA_00270 Recombination protein recR 0.87 2
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.36 CCNA_00270 Recombination protein recR low > 67
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1779 recN DNA repair protein RecN 0.39 Synpcc7942_1369 recR recombination protein RecR — —
Synechocystis sp000284455 PCC 6803 0.19 SGL_RS11690 DNA repair protein RecN 0.40 SGL_RS17075 recombination mediator RecR — —
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.35 Rv3715c Probable recombination protein RecR low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU2463 recN DNA repair protein RecN (TIGR) 0.30 DVU3200 recR recombination protein RecR (TIGR) low > 55
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.36 BBR_RS10990 recombination protein RecR 0.69 2
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0923 SMC domain protein (RefSeq) 0.30 DvMF_2271 recombination protein RecR (RefSeq) low > 51

Not shown: 1 genomes with orthologs for SO3462 only; 2 genomes with orthologs for SO2015 only