Homologs of PS417_25880 from Pseudomonas simiae WCS417

RNA polymerase subunit sigma-70
SEED: RNA polymerase sigma factor RpoD
KEGG: RNA polymerase primary sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_25880 RNA polymerase subunit sigma-70 no data 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS27535 RNA polymerase sigma factor RpoD no data 99 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS27535 RNA polymerase sigma factor RpoD no data 99 100
o Pseudomonas sp. RS175 PFR28_04078 RNA polymerase sigma factor RpoD no data 95 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05296 RNA polymerase sigma factor RpoD no data 97 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2513 RNA polymerase sigma factor RpoD no data 97 100
o Pseudomonas fluorescens FW300-N2C3 AO356_14265 RNA polymerase subunit sigma-70 no data 97 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4791 RNA polymerase sigma factor RpoD no data 97 100
o Pseudomonas orientalis W4I3 QF045_RS00280 RNA polymerase sigma factor RpoD no data 96 100
o Pseudomonas fluorescens FW300-N2E3 AO353_07385 RNA polymerase subunit sigma-70 no data 96 100
o Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 94 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 94 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1186 RNA polymerase sigma factor RpoD no data 96 100
o Pseudomonas sp. DMC3 GFF51 RNA polymerase sigma factor RpoD no data 95 100
o Pseudomonas sp. SVBP6 COO64_RS22580 rpoD RNA polymerase sigma factor RpoD no data 87 100
o Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 87 100
o Pseudomonas sp. BP01 JOY50_RS18070 rpoD RNA polymerase sigma factor RpoD no data 87 100
o Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 86 100
o Pseudomonas segetis P6 ACVTMO_RS04280 rpoD RNA polymerase sigma factor RpoD no data 86 100
o Pseudomonas sp. S08-1 OH686_14970 RNA polymerase sigma factor RpoD no data 86 98
o Pseudomonas aeruginosa MRSN321 DY961_RS22905 rpoD;go_function=DNA-binding RNA polymerase sigma factor RpoD no data 84 100
o Pseudomonas aeruginosa PA14 IKLFDK_22530 RNA polymerase sigma factor RpoD no data 84 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS36440 rpoD;go_function=DNA-binding RNA polymerase sigma factor RpoD no data 84 100
o Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 70 100
o Serratia liquefaciens MT49 IAI46_22125 RNA polymerase sigma factor RpoD no data 68 99
o Enterobacter sp. TBS_079 MPMX20_03909 RNA polymerase sigma factor RpoD no data 67 99
o Enterobacter asburiae PDN3 EX28DRAFT_3102 RNA polymerase, sigma 70 subunit, RpoD no data 67 99
o Klebsiella michiganensis M5al BWI76_RS24555 RNA polymerase sigma factor RpoD no data 67 99
o Pantoea sp. MT58 IAI47_03050 RNA polymerase sigma factor RpoD no data 68 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3177 RNA polymerase sigma factor RpoD no data 67 99
o Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 69 99
o Rahnella sp. WP5 EX31_RS08195 RNA polymerase sigma factor RpoD no data 69 99
o Klebsiella pneumoniae MRSN742743 KFA93_RS12625 rpoD;go_function=DNA-binding RNA polymerase sigma factor RpoD no data 67 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11870 RNA polymerase sigma factor RpoD no data 68 99
o Dickeya dianthicola 67-19 HGI48_RS03110 RNA polymerase sigma factor RpoD no data 69 99
o Dickeya dianthicola ME23 DZA65_RS03105 RNA polymerase sigma factor RpoD no data 69 99
o Klebsiella pneumoniae MKP103 KDGMDA_05365 RNA polymerase sigma factor RpoD no data 67 99
o Pectobacterium carotovorum WPP14 HER17_RS18415 RNA polymerase sigma factor RpoD no data 67 99
o Erwinia amylovora T8 OLJFJH_07585 RNA polymerase sigma factor RpoD no data 68 99
o Escherichia coli BL21 ECD_02937 RNA polymerase, sigma 70 (sigma D) factor no data 67 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00635 RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECOR27 NOLOHH_10445 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECOR38 HEPCGN_17510 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC100 OKFHMN_18655 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC101 MCAODC_09170 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC102 NIAGMN_16420 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC62 BNILDI_01070 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC98 JDDGAC_22290 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli ECRC99 KEDOAH_09490 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Escherichia fergusonii Becca EFB2_00744 RNA polymerase sigma factor RpoD no data 67 99
o Escherichia coli BW25113 b3067 rpoD RNA polymerase sigma factor (NCBI) no data 67 99
o Shewanella sp. ANA-3 Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD (RefSeq) no data 68 99
o Alteromonas macleodii MIT1002 MIT1002_00733 Sigma-70 no data 68 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 68 99
o Erwinia tracheiphila SCR3 LU632_RS20725 rpoD RNA polymerase sigma factor RpoD no data 68 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_14330 rpoD RNA polymerase sigma factor RpoD no data 67 99
o Shewanella oneidensis MR-1 SO1284 rpoD RNA polymerase sigma-70 factor (NCBI ptt file) no data 68 99
o Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 66 99
o Shewanella loihica PV-4 Shew_0996 RpoD family RNA polymerase sigma factor (RefSeq) no data 67 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_02745 RNA polymerase sigma factor RpoD no data 66 99
o Acinetobacter baumannii LAC-4 RR41_RS03995 RNA polymerase sigma factor RpoD no data 64 100
o Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 62 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 60 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01085 RNA polymerase sigma factor RpoD no data 62 100
o Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 63 99
o Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 60 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 60 100
o Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 60 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 62 99
o Methylophilus sp. DMC18 GFF2349 RNA polymerase sigma factor RpoD no data 60 99
o Dechlorosoma suillum PS Dsui_1209 RNA polymerase sigma factor, sigma-70 family no data 59 99
o Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 56 99
  Herbaspirillum seropedicae SmR1 HSERO_RS04365 RNA polymerase sigma factor RpoD no data 54 99
o Cupriavidus basilensis FW507-4G11 RR42_RS14965 hypothetical protein strong 56 99
  Ralstonia solanacearum GMI1000 RS_RS11120 RNA polymerase sigma factor RpoD no data 56 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS15185 RNA polymerase sigma factor RpoD strong 56 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06008 RNA polymerase, sigma 70 subunit, RpoD strong 56 99
o Burkholderia phytofirmans PsJN BPHYT_RS33535 RNA polymerase sigma factor RpoD strong 55 99
o Paraburkholderia graminis OAS925 ABIE53_004866 RNA polymerase primary sigma factor strong 55 99
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03675 RNA polymerase sigma factor RpoD no data 55 99
  Ralstonia solanacearum UW163 UW163_RS09995 RNA polymerase sigma factor RpoD no data 55 99
  Ralstonia sp. UNC404CL21Col ABZR87_RS15600 RNA polymerase sigma factor RpoD no data 55 99
  Variovorax sp. SCN45 GFF2879 RNA polymerase sigma factor RpoD no data 53 99
  Variovorax sp. OAS795 ABID97_RS10535 RNA polymerase sigma factor RpoD no data 53 99
  Acidovorax sp. GW101-3H11 Ac3H11_194 RNA polymerase sigma factor RpoD no data 54 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3822 RNA polymerase sigma factor RpoD no data 53 98
  Cupriavidus basilensis FW507-4G11 RR42_RS10750 DNA-directed RNA polymerase sigma-70 factor no data 50 99
  Burkholderia phytofirmans PsJN BPHYT_RS32590 RNA polymerase sigma factor RpoD no data 50 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03902 RNA polymerase, sigma 70 subunit, RpoD strong 49 99
  Paraburkholderia graminis OAS925 ABIE53_004960 RNA polymerase primary sigma factor strong 49 99
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 49 98
o Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 48 99
  Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 48 98
o Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 48 98
  Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 50 98
  Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 48 98
  Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 47 98
  Sphingobium sp. HT1-2 GFF2093 RNA polymerase sigma factor RpoD no data 46 99
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 48 98
o Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 50 98