Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Xanthobacter sp. DMC5 | GFF3765 | | hypothetical protein | insig. | 100 | 100 |
o | Bosea sp. OAE506 | ABIE41_RS04835 | | RNA pseudouridine synthase | insig. | 55 | 81 |
o | Azospirillum sp. SherDot2 | MPMX19_03163 | | hypothetical protein | insig. | 54 | 83 |
o | Magnetospirillum magneticum AMB-1 | AMB_RS17255 | | RNA pseudouridine synthase | insig. | 53 | 82 |
o | Azospirillum brasilense Sp245 | AZOBR_RS08300 | | pseudouridine synthase | insig. | 54 | 84 |
| Magnetospirillum magneticum AMB-1 | AMB_RS19265 | | RNA pseudouridine synthase | cofit | 46 | 85 |
| Azospirillum sp. SherDot2 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | insig. | 44 | 84 |
| Azospirillum sp. SherDot2 | MPMX19_05341 | | hypothetical protein | insig. | 43 | 91 |
| Bosea sp. OAE506 | ABIE41_RS14710 | | RluA family pseudouridine synthase | insig. | 43 | 83 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_1033 | | pseudouridine synthase, RluA family | no data | 43 | 84 |
| Azospirillum brasilense Sp245 | AZOBR_RS06905 | | pseudouridine synthase | strong | 43 | 83 |
| Rhodopseudomonas palustris CGA009 | TX73_001090 | | RNA pseudouridine synthase | insig. | 57 | 53 |
| Rhodopseudomonas palustris CGA009 | TX73_016595 | | RluA family pseudouridine synthase | insig. | 40 | 83 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_3705 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 44 | 80 |
| Azospirillum brasilense Sp245 | AZOBR_RS31090 | | pseudouridine synthase | insig. | 43 | 83 |
| Xanthobacter sp. DMC5 | GFF1347 | | Ribosomal large subunit pseudouridine synthase C | insig. | 41 | 83 |
| Sinorhizobium meliloti 1021 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | strong | 36 | 91 |
| Rhizobium sp. OAE497 | ABIE40_RS09915 | | RluA family pseudouridine synthase | sig. | 38 | 84 |
| Agrobacterium fabrum C58 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | no data | 40 | 87 |
| Caulobacter crescentus NA1000 | CCNA_01343 | | ribosomal large subunit pseudouridine synthase C | sig. | 39 | 83 |
| Caulobacter crescentus NA1000 Δfur | CCNA_01343 | | ribosomal large subunit pseudouridine synthase C | cofit | 39 | 83 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS07865 | | RluA family pseudouridine synthase | cofit | 40 | 83 |
| Phaeobacter inhibens DSM 17395 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | no data | 36 | 83 |
| Magnetospirillum magneticum AMB-1 | AMB_RS15620 | | RluA family pseudouridine synthase | cofit | 42 | 83 |
| Rhodospirillum rubrum S1H | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | no data | 40 | 83 |
| Caulobacter crescentus NA1000 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | strong | 39 | 90 |
| Caulobacter crescentus NA1000 Δfur | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | cofit | 39 | 90 |
| Dinoroseobacter shibae DFL-12 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | insig. | 37 | 84 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS07880 | | RluA family pseudouridine synthase | insig. | 36 | 83 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0642 | | pseudouridine synthase, RluA family | strong | 36 | 67 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU1024 | rluD/coaE | ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) | insig. | 39 | 75 |
| Kangiella aquimarina DSM 16071 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | insig. | 32 | 83 |
| Shewanella sp. ANA-3 | Shewana3_1430 | | pseudouridine synthase (RefSeq) | sig. | 38 | 72 |
| Pseudomonas simiae WCS417 | PS417_21480 | | 23S rRNA pseudouridylate synthase | strong | 35 | 84 |
| Pseudomonas fluorescens SBW25 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | cofit | 35 | 84 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 35 | 84 |
| Pseudomonas sp. S08-1 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | cofit | 33 | 83 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1374 | rluA | ribosomal large subunit pseudouridine synthase D | sig. | 37 | 76 |
| Pseudomonas stutzeri RCH2 | Psest_1680 | | pseudouridine synthase, RluA family | no data | 34 | 84 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS04500 | | RluA family pseudouridine synthase | cofit | 35 | 95 |
| Alteromonas macleodii MIT1002 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | insig. | 34 | 83 |
| Pseudomonas syringae pv. syringae B728a | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | sig. | 34 | 83 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | insig. | 34 | 83 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_01405 | | 23S rRNA pseudouridylate synthase | strong | 34 | 83 |
| Dechlorosoma suillum PS | Dsui_3205 | | pseudouridine synthase, RluA family | insig. | 38 | 77 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 31 | 83 |
| Pseudomonas sp. DMC3 | GFF4765 | | Ribosomal large subunit pseudouridine synthase C | cofit | 35 | 83 |
| Variovorax sp. SCN45 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | insig. | 35 | 87 |
| Cellulophaga baltica 18 | M666_RS09010 | | RluA family pseudouridine synthase | sig. | 34 | 69 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | no data | 34 | 83 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_15205 | | RNA pseudouridine synthase | strong | 35 | 70 |
| Shewanella loihica PV-4 | Shew_1460 | | pseudouridine synthase (RefSeq) | no data | 36 | 73 |
| Pseudomonas sp. S08-1 | OH686_19760 | | LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase | insig. | 36 | 72 |
| Pseudomonas putida KT2440 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | strong | 34 | 83 |
| Variovorax sp. OAS795 | ABID97_RS08250 | | RluA family pseudouridine synthase | strong | 36 | 87 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_20600 | | RNA pseudouridine synthase | sig. | 35 | 80 |
| Methylophilus sp. DMC18 | GFF1213 | | Ribosomal large subunit pseudouridine synthase D | insig. | 37 | 68 |
| Pseudomonas sp. SVBP6 | COO64_RS05845 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 83 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_20125 | | 23S rRNA pseudouridylate synthase | strong | 34 | 83 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 34 | 83 |
| Pseudomonas sp. BP01 | JOY50_RS16830 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 83 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 32 | 84 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 34 | 83 |
| Pseudomonas syringae pv. syringae B728a | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | strong | 31 | 85 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | strong | 31 | 85 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS10060 | | RluA family pseudouridine synthase | insig. | 39 | 67 |
| Dinoroseobacter shibae DFL-12 | Dshi_3106 | | pseudouridine synthase (RefSeq) | insig. | 38 | 78 |
| Pseudomonas sp. RS175 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | sig. | 34 | 83 |
| Burkholderia phytofirmans PsJN | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | sig. | 32 | 88 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | insig. | 31 | 90 |
| Shewanella sp. ANA-3 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | sig. | 31 | 89 |
| Bosea sp. OAE506 | ABIE41_RS05635 | | RluA family pseudouridine synthase | sig. | 36 | 73 |
| Dechlorosoma suillum PS | Dsui_2437 | | pseudouridine synthase, RluA family | strong | 34 | 86 |
| Pseudomonas putida KT2440 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | no data | 31 | 85 |
| Agrobacterium fabrum C58 | Atu4041 | | ribosomal large subunit pseudouridine synthase A | sig. | 38 | 73 |
| Paraburkholderia graminis OAS925 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | sig. | 31 | 90 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | no data | 31 | 85 |
| Pseudomonas aeruginosa PA14 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | insig. | 32 | 85 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | sig. | 33 | 85 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | strong | 33 | 83 |
| Rhodanobacter denitrificans MT42 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 35 | 75 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 35 | 75 |
| Pantoea sp. MT58 | IAI47_16060 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 35 | 73 |
| Pseudomonas sp. S08-1 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | cofit | 32 | 84 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS14415 | | pseudouridine synthase | strong | 30 | 75 |
| Pseudomonas simiae WCS417 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | no data | 30 | 85 |
| Shewanella amazonensis SB2B | Sama_2197 | | pseudouridylate synthase (RefSeq) | insig. | 37 | 73 |
| Erwinia tracheiphila SCR3 | LU632_RS02800 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | no data | 37 | 73 |
| Rhodanobacter sp. FW510-T8 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 36 | 68 |
| Rhodospirillum rubrum S1H | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | strong | 34 | 73 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | strong | 33 | 69 |
| Pseudomonas stutzeri RCH2 | Psest_0709 | | pseudouridine synthase, RluA family | strong | 32 | 86 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | strong | 30 | 85 |
| Pseudomonas fluorescens SBW25 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | insig. | 30 | 85 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 30 | 85 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | no data | 30 | 84 |
| Rhodanobacter sp000427505 FW510-R12 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | no data | 35 | 75 |
| Pseudomonas sp. RS175 | PFR28_03154 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 34 | 72 |
| Pseudomonas sp. DMC3 | GFF2599 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 34 | 72 |
| Pseudomonas aeruginosa PA14 | IKLFDK_15135 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 83 |