Homologs of GFF3244 from Xanthobacter sp. DMC5

RNA polymerase sigma factor RpoD
SEED: RNA polymerase sigma factor RpoD
KEGG: RNA polymerase primary sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 100 100
o Bosea sp. OAE506 ABIE41_RS11995 RNA polymerase sigma factor RpoD no data 77 100
o Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 74 98
o Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 74 100
o Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 74 100
o Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 75 100
o Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 69 100
o Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 69 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 68 99
o Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 66 97
o Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 65 100
o Magnetospirillum magneticum AMB-1 AMB_RS03585 RNA polymerase sigma factor RpoD no data 65 100
o Azospirillum brasilense Sp245 AZOBR_RS10905 RNA polymerase sigma factor RpoD no data 65 100
o Azospirillum sp. SherDot2 MPMX19_00761 RNA polymerase sigma factor RpoD no data 63 100
o Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 65 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 62 98
o Sphingobium sp. HT1-2 GFF2093 RNA polymerase sigma factor RpoD no data 61 97
o Enterobacter asburiae PDN3 EX28DRAFT_3102 RNA polymerase, sigma 70 subunit, RpoD no data 50 96
o Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 49 96
o Serratia liquefaciens MT49 IAI46_22125 RNA polymerase sigma factor RpoD no data 49 96
o Enterobacter sp. TBS_079 MPMX20_03909 RNA polymerase sigma factor RpoD no data 49 96
o Dickeya dianthicola 67-19 HGI48_RS03110 RNA polymerase sigma factor RpoD no data 49 96
o Dickeya dianthicola ME23 DZA65_RS03105 RNA polymerase sigma factor RpoD no data 49 96
o Klebsiella michiganensis M5al BWI76_RS24555 RNA polymerase sigma factor RpoD no data 49 96
o Pantoea sp. MT58 IAI47_03050 RNA polymerase sigma factor RpoD no data 48 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11870 RNA polymerase sigma factor RpoD no data 48 96
o Methylophilus sp. DMC18 GFF2349 RNA polymerase sigma factor RpoD no data 48 95
o Pseudomonas sp. SVBP6 COO64_RS22580 rpoD RNA polymerase sigma factor RpoD no data 50 95
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01085 RNA polymerase sigma factor RpoD no data 48 95
  Variovorax sp. OAS795 ABID97_RS10535 RNA polymerase sigma factor RpoD no data 46 95
o Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Escherichia coli BL21 ECD_02937 RNA polymerase, sigma 70 (sigma D) factor no data 49 96
o Escherichia coli ECOR27 NOLOHH_10445 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECOR38 HEPCGN_17510 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC100 OKFHMN_18655 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC101 MCAODC_09170 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC102 NIAGMN_16420 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC62 BNILDI_01070 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC98 JDDGAC_22290 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli ECRC99 KEDOAH_09490 rpoD RNA polymerase sigma factor RpoD no data 49 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00635 RNA polymerase sigma factor RpoD no data 49 96
o Pectobacterium carotovorum WPP14 HER17_RS18415 RNA polymerase sigma factor RpoD no data 49 96
o Escherichia fergusonii Becca EFB2_00744 RNA polymerase sigma factor RpoD no data 49 96
o Alteromonas macleodii MIT1002 MIT1002_00733 Sigma-70 no data 49 96
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3177 RNA polymerase sigma factor RpoD no data 49 96
o Rahnella sp. WP5 EX31_RS08195 RNA polymerase sigma factor RpoD no data 48 96
o Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 48 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 48 95
o Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 48 95
o Erwinia amylovora T8 OLJFJH_07585 RNA polymerase sigma factor RpoD no data 48 96
o Escherichia coli BW25113 b3067 rpoD RNA polymerase sigma factor (NCBI) no data 49 96
o Klebsiella pneumoniae MKP103 KDGMDA_05365 RNA polymerase sigma factor RpoD no data 49 96
o Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 50 95
  Variovorax sp. SCN45 GFF2879 RNA polymerase sigma factor RpoD no data 46 95
o Vibrio cholerae E7946 ATCC 55056 CSW01_02745 RNA polymerase sigma factor RpoD no data 49 96
o Shewanella loihica PV-4 Shew_0996 RpoD family RNA polymerase sigma factor (RefSeq) no data 49 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 48 95
o Cupriavidus basilensis FW507-4G11 RR42_RS14965 hypothetical protein strong 46 96
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03675 RNA polymerase sigma factor RpoD no data 47 95
  Ralstonia solanacearum UW163 UW163_RS09995 RNA polymerase sigma factor RpoD no data 47 95
o Erwinia tracheiphila SCR3 LU632_RS20725 rpoD RNA polymerase sigma factor RpoD no data 48 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3822 RNA polymerase sigma factor RpoD no data 46 95
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_14330 rpoD RNA polymerase sigma factor RpoD no data 48 96
o Pseudomonas sp. S08-1 OH686_14970 RNA polymerase sigma factor RpoD no data 50 95
o Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 46 96
  Acidovorax sp. GW101-3H11 Ac3H11_194 RNA polymerase sigma factor RpoD no data 47 95
o Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 46 95
o Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 48 95
o Burkholderia phytofirmans PsJN BPHYT_RS33535 RNA polymerase sigma factor RpoD strong 46 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS15185 RNA polymerase sigma factor RpoD strong 46 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06008 RNA polymerase, sigma 70 subunit, RpoD strong 46 95
o Paraburkholderia graminis OAS925 ABIE53_004866 RNA polymerase primary sigma factor strong 46 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 42 95
o Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 42 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 63 56
o Pseudomonas fluorescens SBW25 PFLU_RS27535 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas fluorescens SBW25-INTG PFLU_RS27535 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas sp. DMC3 GFF51 RNA polymerase sigma factor RpoD no data 66 53
o Pseudomonas sp. RS175 PFR28_04078 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas simiae WCS417 PS417_25880 RNA polymerase subunit sigma-70 no data 65 53
o Pseudomonas fluorescens FW300-N2C3 AO356_14265 RNA polymerase subunit sigma-70 no data 65 53
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4791 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2513 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05296 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas orientalis W4I3 QF045_RS00280 RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas fluorescens FW300-N2E3 AO353_07385 RNA polymerase subunit sigma-70 no data 65 53
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1186 RNA polymerase sigma factor RpoD no data 65 53
o Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 63 54
o Pseudomonas sp. BP01 JOY50_RS18070 rpoD RNA polymerase sigma factor RpoD no data 65 53
o Pseudomonas segetis P6 ACVTMO_RS04280 rpoD RNA polymerase sigma factor RpoD no data 66 52
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03902 RNA polymerase, sigma 70 subunit, RpoD strong 43 95
o Shewanella sp. ANA-3 Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD (RefSeq) no data 63 54
o Shewanella oneidensis MR-1 SO1284 rpoD RNA polymerase sigma-70 factor (NCBI ptt file) no data 63 54
  Burkholderia phytofirmans PsJN BPHYT_RS32590 RNA polymerase sigma factor RpoD no data 42 95
o Pseudomonas aeruginosa MRSN321 DY961_RS22905 rpoD;go_function=DNA-binding RNA polymerase sigma factor RpoD no data 70 47
o Pseudomonas aeruginosa PA14 IKLFDK_22530 RNA polymerase sigma factor RpoD no data 70 47
o Pseudomonas aeruginosa PUPa3 DQ20_RS36440 rpoD;go_function=DNA-binding RNA polymerase sigma factor RpoD no data 70 47
o Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 60 58