Homologs of GFF2842 from Variovorax sp. SCN45

RNA polymerase sigma factor RpoS
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF2842 RNA polymerase sigma factor RpoS insig. 100 100
o Variovorax sp. OAS795 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor insig. 80 100
  Ralstonia solanacearum GMI1000 RS_RS06045 RNA polymerase sigma factor RpoS strong 55 81
  Ralstonia solanacearum PSI07 RPSI07_RS18140 RNA polymerase sigma factor RpoS strong 55 81
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15235 RNA polymerase sigma factor RpoS strong 55 81
  Ralstonia solanacearum UW163 UW163_RS12700 RNA polymerase sigma factor RpoS sig. 55 81
  Ralstonia sp. UNC404CL21Col ABZR87_RS10875 RNA polymerase sigma factor RpoS strong 55 81
o Dechlorosoma suillum PS Dsui_1971 RNA polymerase sigma factor RpoS cofit 53 81
  Cupriavidus basilensis FW507-4G11 RR42_RS13185 RNA polymerase sigma factor RpoS strong 54 81
o Herbaspirillum seropedicae SmR1 HSERO_RS14830 RNA polymerase sigma factor RpoS insig. 53 81
o Burkholderia phytofirmans PsJN BPHYT_RS09115 RNA polymerase sigma factor RpoS sig. 52 93
  Paraburkholderia graminis OAS925 ABIE53_002057 RNA polymerase nonessential primary-like sigma factor strong 54 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00844 RNA polymerase, sigma 38 subunit, RpoS no data 54 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS22240 RNA polymerase sigma factor RpoS cofit 54 81
o Pseudomonas sp. S08-1 OH686_18185 RNA polymerase sigma factor RpoS cofit 49 81
o Pseudomonas aeruginosa MRSN321 DY961_RS14865 rpoS;go_function=DNA RNA polymerase sigma factor RpoS strong 49 81
o Pseudomonas aeruginosa PA14 IKLFDK_18495 RNA polymerase sigma factor RpoS strong 49 81
o Pseudomonas aeruginosa PUPa3 DQ20_RS42260 rpoS;go_function=DNA RNA polymerase sigma factor RpoS strong 49 81
o Pseudomonas segetis P6 ACVTMO_RS16960 rpoS RNA polymerase sigma factor RpoS strong 48 81
o Pseudomonas stutzeri RCH2 Psest_2806 RNA polymerase sigma factor RpoS strong 47 86
o Pseudomonas fluorescens SBW25 PFLU_RS06430 RNA polymerase sigma factor RpoS cofit 47 81
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06430 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas orientalis W4I3 QF045_RS09210 RNA polymerase sigma factor RpoS insig. 47 81
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01443 RNA polymerase sigma factor RpoS cofit 47 81
o Pseudomonas simiae WCS417 PS417_06365 RNA polymerase sigma factor strong 47 81
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4674 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas syringae pv. syringae B728a Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS sig. 47 81
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS cofit 47 81
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3115 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3037 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas fluorescens FW300-N2C3 AO356_05885 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas fluorescens FW300-N2E3 AO353_16615 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas sp. BP01 JOY50_RS23755 rpoS RNA polymerase sigma factor RpoS insig. 47 81
o Pseudomonas sp. DMC3 GFF2084 RNA polymerase sigma factor RpoS strong 47 81
o Pseudomonas sp. SVBP6 COO64_RS19795 rpoS RNA polymerase sigma factor RpoS insig. 47 81
o Pseudomonas putida KT2440 PP_1623 RNA polymerase, sigma S (sigma 38) factor strong 47 81
o Pseudomonas sp. RS175 PFR28_00427 RNA polymerase sigma factor RpoS strong 47 81
o Marinobacter adhaerens HP15 HP15_1283 RNA polymerase, sigma 70 subunit, RpoD family strong 47 81
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17500 rpoS RNA polymerase sigma factor RpoS strong 43 91
o Erwinia tracheiphila SCR3 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS strong 43 91
o Escherichia coli BL21 ECD_02591 RNA polymerase, sigma S (sigma 38) factor cofit 44 89
o Escherichia fergusonii Becca EFB2_01169 RNA polymerase sigma factor RpoS cofit 44 89
o Escherichia coli ECOR27 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli ECOR38 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli ECRC101 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli ECRC102 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli ECRC62 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli ECRC98 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS strong 44 89
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00992 RNA polymerase sigma factor RpoS insig. 44 89
o Escherichia coli BW25113 b2741 rpoS RNA polymerase sigma factor (NCBI) strong 44 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4788 RNA polymerase sigma factor RpoS strong 44 91
o Rahnella sp. WP5 EX31_RS07825 RNA polymerase sigma factor RpoS strong 44 92
o Escherichia coli ECRC100 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS cofit 44 89
o Alteromonas macleodii MIT1002 MIT1002_00625 RNA polymerase sigma factor RpoS strong 43 90
o Klebsiella pneumoniae MKP103 KDGMDA_03220 RNA polymerase sigma factor RpoS strong 44 89
o Serratia liquefaciens MT49 IAI46_03790 RNA polymerase sigma factor RpoS strong 43 93
o Shewanella amazonensis SB2B Sama_1044 RNA polymerase sigma-38 factor (RefSeq) sig. 47 81
o Enterobacter asburiae PDN3 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS strong 44 89
o Enterobacter sp. TBS_079 MPMX20_03627 RNA polymerase sigma factor RpoS strong 44 89
o Pantoea sp. MT58 IAI47_04235 RNA polymerase sigma factor RpoS strong 43 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_02835 RNA polymerase sigma factor RpoS cofit 43 90
o Klebsiella michiganensis M5al BWI76_RS22645 RNA polymerase sigma factor RpoS strong 44 89
o Erwinia amylovora T8 OLJFJH_09380 RNA polymerase sigma factor RpoS sig. 44 89
o Shewanella oneidensis MR-1 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) sig. 45 82
o Shewanella sp. ANA-3 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) sig. 45 82
o Dickeya dianthicola 67-19 HGI48_RS16945 RNA polymerase sigma factor RpoS insig. 46 81
o Shewanella loihica PV-4 Shew_1213 RpoD family RNA polymerase sigma factor (RefSeq) insig. 45 82
o Dickeya dadantii 3937 DDA3937_RS16875 RNA polymerase sigma factor RpoS no data 46 81
o Pectobacterium carotovorum WPP14 HER17_RS04350 RNA polymerase sigma factor RpoS strong 42 92
o Dickeya dianthicola ME23 DZA65_RS18020 RNA polymerase sigma factor RpoS sig. 46 81
  Escherichia coli ECRC99 KEDOAH_07640 rpoS RNA polymerase sigma factor RpoS no data 48 70
  Fusobacterium nucleatum SB010 HUW76_03650 RNA polymerase sigma factor RpoD no data 40 76
  Mycobacterium tuberculosis H37Rv Rv2710 RNA polymerase sigma factor SigB no data 37 77
  Synechococcus elongatus PCC 7942 Synpcc7942_0569 rpoD4 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like strong 42 67
  Bifidobacterium breve UCC2003 BBR_RS16480 RNA polymerase sigma factor no data 35 82
  Paraburkholderia sabiae LMG 24235 QEN71_RS13555 RNA polymerase sigma factor RpoD no data 40 67
  Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 39 69
  Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 39 67
  Mycobacterium tuberculosis H37Rv Rv2703 RNA polymerase sigma factor SigA (sigma-A) no data 37 81
  Phocaeicola dorei CL03T12C01 ABI39_RS13985 RNA polymerase sigma factor RpoD/SigA no data 36 80
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17770 RNA polymerase sigma factor RpoD/SigA no data 36 80
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 35 83
  Synechocystis sp000284455 PCC 6803 SGL_RS17245 RNA polymerase sigma factor RpoD no data 38 72
  Synechococcus elongatus PCC 7942 Synpcc7942_0672 rpoD3 RNA polymerase sigma factor SigD sig. 41 69
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 36 79
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 36 79
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 36 79
  Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 38 67
  Synechococcus elongatus PCC 7942 Synpcc7942_1557 rpoD6 principal RNA polymerase sigma factor SigA strong 36 80
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15895 RNA polymerase sigma factor RpoD/SigA no data 35 83
  Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 38 67
  Cupriavidus basilensis FW507-4G11 RR42_RS10750 DNA-directed RNA polymerase sigma-70 factor no data 40 67
  Synechococcus elongatus PCC 7942 Synpcc7942_0649 rpoD1 RNA polymerase sigma factor RpoD no data 39 67
  Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 39 67
  Synechocystis sp000284455 PCC 6803 SGL_RS14610 RNA polymerase sigma factor SigC cofit 39 67
  Synechocystis sp000284455 PCC 6803 SGL_RS07740 RNA polymerase sigma factor, RpoD/SigA family strong 39 70
  Acinetobacter baumannii LAC-4 RR41_RS03995 RNA polymerase sigma factor RpoD no data 39 67
  Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 38 67
  Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 37 73
  Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 37 73