| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18780 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | cofit | 100 | 100 |
| o | Shewanella oneidensis MR-1 | SO0980 | | RNA methyltransferase, TrmA family (NCBI ptt file) | insig. | 59 | 100 |
| o | Shewanella amazonensis SB2B | Sama_0630 | rumB | 23S rRNA methyluridine methyltransferase (RefSeq) | insig. | 59 | 100 |
| o | Shewanella sp. ANA-3 | Shewana3_3309 | rumB | 23S rRNA methyluridine methyltransferase (RefSeq) | insig. | 58 | 100 |
| o | Shewanella loihica PV-4 | Shew_0801 | rumB | 23S rRNA methyluridine methyltransferase (RefSeq) | insig. | 58 | 100 |
| o | Pantoea sp. MT58 | IAI47_13020 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 56 | 100 |
| o | Escherichia coli ECOR38 | HEPCGN_02095 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Escherichia fergusonii Becca | EFB2_03202 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS04575 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Escherichia coli ECOR27 | NOLOHH_22305 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_05935 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | cofit | 56 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_25150 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 56 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_03980 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | cofit | 56 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_21975 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | no data | 56 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02809 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_09570 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 56 | 100 |
| o | Erwinia tracheiphila SCR3 | LU632_RS09660 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 99 |
| o | Escherichia coli BL21 | ECD_00864 | | 23S rRNA m(5)U747 methyltransferase, SAM-dependent | insig. | 55 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_20560 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS13105 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | cofit | 56 | 100 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_20140 | rlmC | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | cofit | 55 | 99 |
| o | Escherichia coli BW25113 | b0859 | rumB | 23S rRNA m(5)U747-methyltransferase (NCBI) | sig. | 55 | 100 |
| o | Serratia liquefaciens MT49 | IAI46_08395 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_01500 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_17730 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Klebsiella pneumoniae MRSN742743 | KFA93_RS01150 | rlmC;go_function=rRNA | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 55 | 100 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_2094 | | 23S rRNA (uracil-5-)-methyltransferase RumB | insig. | 53 | 100 |
| o | Dickeya dadantii 3937 | DDA3937_RS09485 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 54 | 100 |
| o | Dickeya dianthicola 67-19 | HGI48_RS09505 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 54 | 100 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS12475 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 53 | 100 |
| o | Dickeya dianthicola ME23 | DZA65_RS09815 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 54 | 100 |
| o | Klebsiella michiganensis M5al | BWI76_RS09485 | | 23S rRNA (uracil(747)-C(5))-methyltransferase | insig. | 54 | 100 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF763 | | 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) | insig. | 52 | 100 |
| o | Rahnella sp. WP5 | EX31_RS09605 | | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | insig. | 52 | 100 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 30 | 78 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1383 | | RNA methyltransferase, TrmA family (RefSeq) | insig. | 29 | 100 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | insig. | 26 | 97 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 26 | 99 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06135 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 25 | 98 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS02375 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 28 | 99 |
| | Shewanella amazonensis SB2B | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | sig. | 29 | 97 |
| | Fusobacterium nucleatum SB010 | HUW76_01255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 25 | 96 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS17490 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 97 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS16525 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 26 | 97 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS03720 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 25 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 28 | 97 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 25 | 97 |
| | Pseudomonas sp. DMC3 | GFF4819 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 30 | 99 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 90 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0643 | | RNA methyltransferase (NCBI ptt file) | sig. | 27 | 97 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 28 | 97 |
| | Cellulophaga baltica 18 | M666_RS10255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 78 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 99 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 78 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_17370 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 100 |
| | Erwinia tracheiphila SCR3 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 100 |
| | Pectobacterium carotovorum WPP14 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 97 |
| | Marinobacter adhaerens HP15 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | insig. | 26 | 99 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | sig. | 29 | 97 |
| | Serratia liquefaciens MT49 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 98 |
| | Shewanella oneidensis MR-1 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | strong | 25 | 97 |
| | Pseudomonas simiae WCS417 | PS417_20155 | | 23S rRNA methyltransferase | insig. | 29 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_02715 | | 23S rRNA methyltransferase | sig. | 29 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 28 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | cofit | 25 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | strong | 28 | 97 |
| | Pseudomonas protegens RBAN4 | FABNJH_22980 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 97 |
| | Acinetobacter baumannii LAC-4 | RR41_RS16085 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | strong | 29 | 97 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 31 | 47 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_19055 | | 23S rRNA methyltransferase | insig. | 28 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS07330 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 28 | 99 |
| | Erwinia amylovora T8 | OLJFJH_09240 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 50 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS07780 | rlmD;go_function=RNA | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 25 | 98 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_04195 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 25 | 98 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS45015 | rlmD;go_function=RNA | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 25 | 98 |
| | Rahnella sp. WP5 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 97 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | insig. | 33 | 46 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_03340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 51 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS18420 | rlmD;go_function=RNA | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 51 |
| | Pseudomonas sp. S08-1 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 27 | 97 |
| | Escherichia coli ECOR38 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli ECRC62 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 31 | 47 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli BW25113 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | insig. | 31 | 47 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 28 | 99 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 28 | 99 |
| | Escherichia coli ECOR27 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia fergusonii Becca | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 47 |
| | Pseudomonas sp. RS175 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 27 | 97 |
| | Enterobacter sp. TBS_079 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 46 |
| | Escherichia coli ECRC100 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 31 | 47 |
| | Escherichia coli ECRC101 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli ECRC102 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli ECRC98 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Escherichia coli ECRC99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | no data | 31 | 47 |
| | Shewanella loihica PV-4 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | cofit | 25 | 99 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS04385 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 32 | 51 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 27 | 99 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 27 | 99 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 32 | 46 |
| | Escherichia coli BL21 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | insig. | 31 | 47 |
| | Dickeya dianthicola 67-19 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 46 |
| | Dickeya dadantii 3937 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 31 | 46 |
| | Pantoea sp. MT58 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 51 |
| | Klebsiella michiganensis M5al | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | sig. | 30 | 50 |
| | Alteromonas macleodii MIT1002 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS08190 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 32 | 46 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 30 | 47 |
| | Methylophilus sp. DMC18 | GFF916 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 24 | 99 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 99 |
| | Dickeya dianthicola ME23 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 30 | 46 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 99 |
| | Erwinia amylovora T8 | OLJFJH_06160 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 32 | 45 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_13145 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 31 | 45 |
| | Erwinia tracheiphila SCR3 | LU632_RS19550 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 31 | 45 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 25 | 99 |
| | Acinetobacter radioresistens SK82 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 24 | 97 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_09400 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS22875 | trmA;go_function=tRNA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Klebsiella michiganensis M5al | BWI76_RS00885 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 31 | 45 |
| | Pantoea sp. MT58 | IAI47_00950 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 32 | 45 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS11940 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 25 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 99 |
| | Dechlorosoma suillum PS | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | cofit | 24 | 97 |
| | Ralstonia solanacearum GMI1000 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | sig. | 24 | 99 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | cofit | 31 | 48 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS00945 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 32 | 45 |
| | Paraburkholderia graminis OAS925 | ABIE53_002060 | | tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) | sig. | 30 | 47 |
| | Pseudomonas putida KT2440 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | strong | 26 | 99 |
| | Escherichia coli ECRC101 | MCAODC_04035 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Pseudomonas sp. BP01 | JOY50_RS23905 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 26 | 97 |
| | Enterobacter sp. TBS_079 | MPMX20_04515 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 32 | 46 |
| | Escherichia coli BL21 | ECD_03850 | | tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase | cofit | 32 | 45 |
| | Escherichia fergusonii Becca | EFB2_04645 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 32 | 45 |
| | Escherichia coli ECOR27 | NOLOHH_05680 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 32 | 45 |
| | Escherichia coli ECOR38 | HEPCGN_12190 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Escherichia coli ECRC100 | OKFHMN_13535 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 32 | 45 |
| | Escherichia coli ECRC102 | NIAGMN_11285 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 32 | 45 |
| | Escherichia coli ECRC62 | BNILDI_05845 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Escherichia coli ECRC98 | JDDGAC_17160 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Escherichia coli ECRC99 | KEDOAH_14625 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | no data | 32 | 45 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04085 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 32 | 45 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS22900 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 32 | 45 |
| | Escherichia coli BW25113 | b3965 | trmA | tRNA (uracil-5-)-methyltransferase (NCBI) | sig. | 32 | 45 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2351 | | tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) | cofit | 31 | 45 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS13170 | | 23S rRNA methyltransferase | insig. | 24 | 99 |
| | Lysobacter sp. OAE881 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 31 | 47 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | insig. | 29 | 47 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 99 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS09125 | | 23S rRNA methyltransferase | insig. | 31 | 46 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_4428 | | tRNA (uracil(54)-C(5))-methyltransferase | insig. | 31 | 46 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 99 |
| | Shewanella loihica PV-4 | Shew_0138 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | insig. | 28 | 45 |
| | Shewanella oneidensis MR-1 | SO0206 | trmA | tRNA (uracil-5-)-methyltransferase (NCBI ptt file) | sig. | 29 | 45 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_00785 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 28 | 47 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 99 |
| | Ralstonia solanacearum UW163 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 24 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_0179 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | insig. | 30 | 45 |
| | Pseudomonas stutzeri RCH2 | Psest_3451 | | tRNA (uracil-5-)-methyltransferase | sig. | 31 | 45 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 29 | 45 |
| | Serratia liquefaciens MT49 | IAI46_24455 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 31 | 37 |
| | Dechlorosoma suillum PS | Dsui_2239 | | tRNA (uracil-5-)-methyltransferase | insig. | 28 | 45 |
| | Bifidobacterium breve UCC2003 | BBR_RS16615 | | class I SAM-dependent RNA methyltransferase | strong | 27 | 38 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS14825 | | 23S rRNA methyltransferase | insig. | 30 | 46 |
| | Shewanella amazonensis SB2B | Sama_0193 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | sig. | 26 | 45 |
| | Pectobacterium carotovorum WPP14 | HER17_RS00975 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 31 | 37 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4287 | | tRNA (uracil-5-)-methyltransferase | insig. | 31 | 37 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4287 | | tRNA (uracil-5-)-methyltransferase | insig. | 31 | 37 |
| | Pseudomonas sp. BP01 | JOY50_RS27500 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 30 | 45 |
| | Pseudomonas segetis P6 | ACVTMO_RS19815 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 30 | 45 |
| | Pseudomonas putida KT2440 | PP_4654 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | strong | 30 | 45 |
| | Acinetobacter baumannii LAC-4 | RR41_RS11900 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 27 | 44 |
| | Alteromonas macleodii MIT1002 | MIT1002_03370 | | tRNA (uracil(54)-C(5))-methyltransferase | insig. | 29 | 45 |
| | Dickeya dadantii 3937 | DDA3937_RS00990 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 30 | 37 |
| | Dickeya dianthicola 67-19 | HGI48_RS20385 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 29 | 45 |
| | Dickeya dianthicola ME23 | DZA65_RS21430 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 29 | 45 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_30015 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | strong | 29 | 45 |
| | Acinetobacter radioresistens SK82 | MPMX26_01714 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 28 | 38 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 27 | 46 |
| | Rahnella sp. WP5 | EX31_RS14140 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 30 | 44 |
| | Pseudomonas sp. S08-1 | OH686_16060 | | tRNA (uracil(54)-C(5))-methyltransferase | cofit | 31 | 37 |
| | Pseudomonas protegens RBAN4 | FABNJH_27150 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 29 | 45 |
| | Pseudomonas sp. SVBP6 | COO64_RS02860 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 28 | 45 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS09335 | trmA;go_function=S-adenosylmethionine-dependent | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 29 | 45 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS52695 | trmA;go_function=tRNA | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 29 | 45 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_13905 | | tRNA (uracil-5-)-methyltransferase | sig. | 25 | 95 |
| | Pseudomonas simiae WCS417 | PS417_24385 | | tRNA (uracil-5-)-methyltransferase | sig. | 28 | 45 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05030 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 28 | 45 |
| | Pseudomonas sp. RS175 | PFR28_03809 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 30 | 37 |
| | Pseudomonas orientalis W4I3 | QF045_RS26680 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | insig. | 27 | 45 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15600 | | tRNA (uracil-5-)-methyltransferase | insig. | 28 | 45 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5063 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | strong | 29 | 37 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS26305 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | cofit | 27 | 45 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS26305 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | sig. | 27 | 45 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2754 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | insig. | 28 | 37 |
| | Variovorax sp. SCN45 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | cofit | 30 | 46 |
| | Pseudomonas sp. DMC3 | GFF3938 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | insig. | 28 | 37 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1430 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | sig. | 28 | 37 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | insig. | 28 | 46 |
| | Agrobacterium fabrum C58 | Atu0735 | | RNA methyltransferase | insig. | 29 | 52 |
| | Mycobacterium tuberculosis H37Rv | Rv2689c | | Conserved alanine and valine and glycine rich protein | insig. | 23 | 45 |
| | Caulobacter crescentus NA1000 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | sig. | 26 | 45 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | cofit | 26 | 45 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | insig. | 28 | 53 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_00740 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | insig. | 30 | 33 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c34810 | | putative RNA methyltransferase | insig. | 28 | 51 |
| | Rhizobium sp. OAE497 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | insig. | 33 | 52 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | insig. | 27 | 56 |
| | Pectobacterium carotovorum WPP14 | HER17_RS10485 | | peptide chain release factor N(5)-glutamine methyltransferase | cofit | 37 | 20 |
| | Rhodopseudomonas palustris CGA009 | TX73_004885 | | methyltransferase | insig. | 25 | 56 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_24655 | | peptide chain release factor N(5)-glutamine methyltransferase | strong | 35 | 21 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS16025 | prmC;go_function=S-adenosylmethionine-dependent | peptide chain release factor N(5)-glutamine methyltransferase | no data | 35 | 21 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | cofit | 27 | 37 |
| | Sphingobium sp. HT1-2 | GFF99 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | cofit | 27 | 47 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2773 | | Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 | strong | 28 | 43 |
| | Sinorhizobium meliloti 1021 | SMc00974 | | RNA methyltransferase | insig. | 29 | 37 |
| | Serratia liquefaciens MT49 | IAI46_10285 | | peptide chain release factor N(5)-glutamine methyltransferase | cofit | 35 | 21 |
| | Rahnella sp. WP5 | EX31_RS07310 | | peptide chain release factor N(5)-glutamine methyltransferase | no data | 37 | 20 |
| | Escherichia coli BL21 | ECD_01187 | | RF-1 and RF-2 N5-glutamine methyltransferase | no data | 36 | 20 |
| | Escherichia coli ECRC100 | OKFHMN_28455 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | no data | 36 | 20 |
| | Escherichia coli ECRC101 | MCAODC_21805 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | no data | 36 | 20 |
| | Escherichia coli ECRC102 | NIAGMN_27780 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | no data | 36 | 20 |
| | Escherichia coli ECRC98 | JDDGAC_06120 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | insig. | 36 | 20 |
| | Escherichia coli ECRC99 | KEDOAH_25450 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | no data | 36 | 20 |
| | Escherichia coli ECOR38 | HEPCGN_24920 | prmC | peptide chain release factor N(5)-glutamine methyltransferase | strong | 35 | 20 |
| | Escherichia fergusonii Becca | EFB2_02715 | | Release factor glutamine methyltransferase | no data | 35 | 20 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS07325 | | peptide chain release factor N(5)-glutamine methyltransferase | no data | 35 | 20 |
| | Enterobacter sp. TBS_079 | MPMX20_02635 | | Release factor glutamine methyltransferase | strong | 34 | 19 |
| | Klebsiella michiganensis M5al | BWI76_RS17430 | | protein-(glutamine-N5) methyltransferase, release factor-specific | no data | 35 | 20 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0831 | | protein-(glutamine-N5) methyltransferase, release factor-specific | no data | 34 | 21 |
| | Xanthobacter sp. DMC5 | GFF893 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | insig. | 27 | 45 |
| | Dickeya dianthicola 67-19 | HGI48_RS10935 | | peptide chain release factor N(5)-glutamine methyltransferase | no data | 38 | 19 |
| | Dickeya dianthicola ME23 | DZA65_RS11395 | | peptide chain release factor N(5)-glutamine methyltransferase | insig. | 38 | 19 |
| | Dickeya dadantii 3937 | DDA3937_RS10985 | | peptide chain release factor N(5)-glutamine methyltransferase | strong | 37 | 19 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0950 | | [protein release factor]-glutamine N5-methyltransferase | no data | 34 | 24 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0950 | | [protein release factor]-glutamine N5-methyltransferase | insig. | 34 | 24 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02475 | | Release factor glutamine methyltransferase | insig. | 33 | 20 |
| | Escherichia coli BW25113 | b1212 | prmC | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | no data | 33 | 20 |
| | Azospirillum brasilense Sp245 | AZOBR_RS01195 | | RNA methyltransferase | insig. | 25 | 50 |