Homologs of CSW01_18780 from Vibrio cholerae E7946 ATCC 55056

23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
SEED: 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-)
KEGG: RNA methyltransferase, TrmA family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 100 100
o Shewanella oneidensis MR-1 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) insig. 59 100
o Shewanella amazonensis SB2B Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 59 100
o Shewanella sp. ANA-3 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 58 100
o Shewanella loihica PV-4 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 58 100
o Pantoea sp. MT58 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 56 100
o Escherichia coli ECOR38 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Escherichia coli ECOR27 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 55 100
o Escherichia fergusonii Becca EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Escherichia coli Nissle 1917 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Escherichia coli ECRC100 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 56 100
o Escherichia coli ECRC101 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 56 100
o Escherichia coli ECRC102 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 56 100
o Escherichia coli ECRC99 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC no data 56 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Escherichia coli ECRC98 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 56 100
o Erwinia tracheiphila SCR3 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 99
o Escherichia coli BL21 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent insig. 55 100
o Escherichia coli ECRC62 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 55 100
o Escherichia coli BW25113 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) sig. 55 100
o Serratia liquefaciens MT49 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Enterobacter sp. TBS_079 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 55 100
o Enterobacter asburiae PDN3 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB insig. 53 100
o Dickeya dadantii 3937 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 54 100
o Dickeya dianthicola 67-19 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 54 100
o Pectobacterium carotovorum WPP14 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 53 100
o Klebsiella michiganensis M5al BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase insig. 54 100
o Dickeya dianthicola ME23 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 54 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) insig. 52 100
o Rahnella sp. WP5 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 52 100
  Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 30 78
  Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 29 100
  Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 26 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 26 99
  Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 98
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 28 99
  Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 29 97
  Fusobacterium nucleatum SB010 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 25 96
  Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 97
  Bacteroides stercoris CC31F HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 26 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 25 97
  Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 97
  Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 30 99
o Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA insig. 25 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 90
  Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 27 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 97
  Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 78
  Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 99
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 78
  Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 100
  Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 97
  Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 26 99
  Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 98
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 29 97
  Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 25 97
  Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 29 99
  Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 29 97
  Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 25 97
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 28 97
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 29 97
  Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 31 47
  Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 28 97
  Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 99
  Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 50
  Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 98
  Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 97
  Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 33 46
  Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 27 97
  Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 28 99
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 28 99
  Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 47
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 31 47
  Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 47
  Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 47
  Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 27 97
  Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 46
  Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 47
  Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 31 47
  Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 25 99
  Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 27 99
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 27 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 32 46
  Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 31 47
  Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 46
  Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 46
  Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 51
  Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 30 50
  Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 30 47
  Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 24 99
  Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 99
  Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 46
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 99