| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_13995 | | ATP synthase epsilon chain | no data | 100 | 100 |
| o | Escherichia coli BL21 | ECD_03615 | | F1 sector of membrane-bound ATP synthase, epsilon subunit | no data | 78 | 97 |
| o | Escherichia fergusonii Becca | EFB2_04902 | | ATP synthase epsilon chain | insig. | 78 | 97 |
| o | Escherichia coli ECOR27 | NOLOHH_06970 | atpC | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| o | Escherichia coli ECOR38 | HEPCGN_13550 | atpC | F0F1 ATP synthase subunit epsilon | sig. | 78 | 97 |
| o | Escherichia coli ECRC100 | OKFHMN_14835 | atpC | F0F1 ATP synthase subunit epsilon | cofit | 78 | 97 |
| o | Escherichia coli ECRC101 | MCAODC_05340 | atpC | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| o | Escherichia coli ECRC62 | BNILDI_04555 | atpC | F0F1 ATP synthase subunit epsilon | insig. | 78 | 97 |
| o | Escherichia coli ECRC98 | JDDGAC_18455 | atpC | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| o | Escherichia coli ECRC99 | KEDOAH_13315 | atpC | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04322 | | ATP synthase epsilon chain | no data | 78 | 97 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS21465 | | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS25860 | | F0F1 ATP synthase subunit epsilon | no data | 78 | 97 |
| o | Escherichia coli BW25113 | b3731 | atpC | F0F1 ATP synthase subunit epsilon (NCBI) | no data | 78 | 97 |
| o | Klebsiella michiganensis M5al | BWI76_RS00180 | | F0F1 ATP synthase subunit epsilon | strong | 78 | 97 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_08790 | | F0F1 ATP synthase subunit epsilon | no data | 77 | 97 |
| o | Klebsiella pneumoniae MRSN742743 | KFA93_RS08340 | | F0F1 ATP synthase subunit epsilon | no data | 77 | 97 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1727 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 77 | 96 |
| o | Escherichia coli ECRC102 | NIAGMN_12590 | atpC | F0F1 ATP synthase subunit epsilon | no data | 77 | 97 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_4007 | | ATP synthase, F1 epsilon subunit (delta in mitochondria) | no data | 76 | 97 |
| o | Enterobacter sp. TBS_079 | MPMX20_04636 | | ATP synthase epsilon chain | no data | 76 | 97 |
| o | Pantoea sp. MT58 | IAI47_00250 | | F0F1 ATP synthase subunit epsilon | no data | 76 | 97 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS19085 | | F0F1 ATP synthase subunit epsilon | no data | 75 | 97 |
| o | Dickeya dadantii 3937 | DDA3937_RS21555 | | F0F1 ATP synthase subunit epsilon | no data | 76 | 96 |
| o | Dickeya dianthicola 67-19 | HGI48_RS21430 | | F0F1 ATP synthase subunit epsilon | cofit | 76 | 96 |
| o | Dickeya dianthicola ME23 | DZA65_RS22410 | | F0F1 ATP synthase subunit epsilon | insig. | 76 | 96 |
| o | Rahnella sp. WP5 | EX31_RS06090 | | F0F1 ATP synthase subunit epsilon | no data | 75 | 99 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS21650 | | F0F1 ATP synthase subunit epsilon | no data | 73 | 97 |
| o | Serratia liquefaciens MT49 | IAI46_25160 | | F0F1 ATP synthase subunit epsilon | cofit | 76 | 97 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_09025 | atpC | F0F1 ATP synthase subunit epsilon | no data | 75 | 97 |
| o | Erwinia tracheiphila SCR3 | LU632_RS24765 | atpC | F0F1 ATP synthase subunit epsilon | no data | 75 | 97 |
| o | Erwinia amylovora T8 | OLJFJH_05270 | | F0F1 ATP synthase subunit epsilon | no data | 71 | 97 |
| o | Alteromonas macleodii MIT1002 | MIT1002_04112 | | F-ATPase epsilon subunit | no data | 69 | 97 |
| o | Shewanella oneidensis MR-1 | SO4746 | atpC | ATP synthase F1, epsilon subunit (NCBI ptt file) | no data | 58 | 99 |
| o | Shewanella sp. ANA-3 | Shewana3_4129 | atpC | F0F1 ATP synthase subunit epsilon (RefSeq) | no data | 58 | 99 |
| o | Shewanella amazonensis SB2B | Sama_3643 | atpC | F0F1 ATP synthase subunit epsilon (RefSeq) | no data | 62 | 98 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS29280 | | F0F1 ATP synthase subunit epsilon | no data | 55 | 97 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS19380 | | ATP synthase epsilon chain | no data | 54 | 97 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02397 | | ATP synthase F1 subcomplex epsilon subunit | no data | 54 | 97 |
| o | Paraburkholderia graminis OAS925 | ABIE53_000250 | | F-type H+-transporting ATPase subunit epsilon | no data | 54 | 97 |
| o | Ralstonia solanacearum GMI1000 | RS_RS16615 | | ATP synthase epsilon chain 1 | no data | 58 | 97 |
| o | Shewanella loihica PV-4 | Shew_3844 | | F0F1 ATP synthase subunit epsilon (RefSeq) | no data | 59 | 99 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS04065 | | F0F1 ATP synthase subunit epsilon | no data | 62 | 84 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08805 | | F0F1 ATP synthase subunit epsilon | no data | 61 | 84 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS08470 | | F0F1 ATP synthase subunit epsilon | no data | 61 | 84 |
| o | Ralstonia solanacearum UW163 | UW163_RS04805 | | F0F1 ATP synthase subunit epsilon | no data | 61 | 84 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS20155 | | ATP synthase F0F1 subunit epsilon | no data | 60 | 84 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2946 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 53 | 97 |
| o | Marinobacter adhaerens HP15 | HP15_3678 | | ATP synthase epsilon chain | no data | 54 | 97 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_2092 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 51 | 97 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS20440 | | F0F1 ATP synthase subunit epsilon | insig. | 48 | 96 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS21800 | | F0F1 ATP synthase subunit epsilon | no data | 59 | 79 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_0389 | | ATP synthase F1 subcomplex epsilon subunit | insig. | 50 | 98 |
| o | Variovorax sp. OAS795 | ABID97_RS00445 | | F0F1 ATP synthase subunit epsilon | no data | 51 | 99 |
| o | Variovorax sp. SCN45 | GFF3688 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 51 | 97 |
| o | Pseudomonas segetis P6 | ACVTMO_RS01145 | | F0F1 ATP synthase subunit epsilon | no data | 48 | 98 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_683 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 49 | 98 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03350 | | F0F1 ATP synthase subunit epsilon | sig. | 46 | 91 |
| o | Pseudomonas sp. RS175 | PFR28_04575 | | ATP synthase epsilon chain | no data | 48 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1944 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 48 | 97 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS30115 | | F0F1 ATP synthase subunit epsilon | no data | 47 | 98 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS30115 | | F0F1 ATP synthase subunit epsilon | no data | 47 | 98 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00162 | | ATP synthase epsilon chain | no data | 47 | 98 |
| o | Pseudomonas orientalis W4I3 | QF045_RS02845 | | F0F1 ATP synthase subunit epsilon | no data | 47 | 98 |
| o | Pseudomonas simiae WCS417 | PS417_28460 | | ATP synthase F0F1 subunit epsilon | no data | 47 | 98 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS13600 | | F0F1 ATP synthase subunit epsilon | no data | 46 | 96 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS09365 | | F0F1 ATP synthase subunit epsilon | no data | 46 | 96 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS09705 | | F0F1 ATP synthase subunit epsilon | no data | 46 | 96 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_15975 | atpC | F0F1 ATP synthase subunit epsilon | no data | 46 | 96 |
| o | Pseudomonas sp. BP01 | JOY50_RS08440 | | F0F1 ATP synthase subunit epsilon | no data | 47 | 99 |
| o | Dechlorosoma suillum PS | Dsui_0858 | | ATP synthase, F1 epsilon subunit | no data | 59 | 99 |
| | Acinetobacter baumannii LAC-4 | RR41_RS18130 | | F0F1 ATP synthase subunit epsilon | no data | 49 | 79 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4214 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 47 | 98 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS10325 | | F0F1 ATP synthase subunit epsilon | no data | 51 | 81 |
| o | Pseudomonas putida KT2440 | PP_5412 | | ATP synthase epsilon chain | no data | 47 | 99 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS02200 | | F0F1 ATP synthase subunit epsilon | no data | 45 | 96 |
| o | Pseudomonas sp. SVBP6 | COO64_RS02020 | | F0F1 ATP synthase subunit epsilon | no data | 46 | 99 |
| o | Pseudomonas stutzeri RCH2 | Psest_4353 | | ATP synthase, F1 epsilon subunit (delta in mitochondria) | no data | 50 | 98 |
| | Acinetobacter radioresistens SK82 | MPMX26_00105 | | ATP synthase epsilon chain | no data | 48 | 79 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_11725 | | ATP synthase F0F1 subunit epsilon | no data | 47 | 98 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_10385 | | ATP synthase F0F1 subunit epsilon | no data | 47 | 98 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS26105 | | F0F1 ATP synthase subunit epsilon | no data | 49 | 98 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_25645 | | F0F1 ATP synthase subunit epsilon | no data | 49 | 98 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS58525 | | F0F1 ATP synthase subunit epsilon | no data | 49 | 98 |
| o | Lysobacter sp. OAE881 | ABIE51_RS18365 | | F0F1 ATP synthase subunit epsilon | no data | 46 | 98 |
| o | Pseudomonas sp. DMC3 | GFF557 | | ATP synthase epsilon chain | no data | 47 | 98 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_5120 | | ATP synthase F1 subcomplex epsilon subunit | no data | 46 | 98 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_5120 | | ATP synthase F1 subcomplex epsilon subunit | no data | 46 | 98 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4570.1 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 43 | 96 |
| | Ralstonia solanacearum GMI1000 | RS_RS20990 | | ATP synthase epsilon chain 2 | insig. | 46 | 91 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS19835 | | F0F1 ATP synthase subunit epsilon | no data | 47 | 91 |
| | Ralstonia solanacearum UW163 | UW163_RS19340 | | F0F1 ATP synthase subunit epsilon | insig. | 47 | 91 |
| o | Pseudomonas sp. S08-1 | OH686_12720 | | ATP synthase F1, epsilon subunit | no data | 47 | 98 |
| o | Methylophilus sp. DMC18 | GFF2090 | | ATP synthase epsilon chain | insig. | 51 | 97 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_2832 | atpC | F0F1 ATP synthase subunit epsilon (RefSeq) | no data | 38 | 91 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0774 | atpC | ATP synthase, F1 epsilon subunit (TIGR) | no data | 39 | 74 |
| o | Azospirillum sp. SherDot2 | MPMX19_02100 | | ATP synthase epsilon chain | no data | 35 | 89 |
| o | Rhodopseudomonas palustris CGA009 | TX73_000910 | | F0F1 ATP synthase subunit epsilon | strong | 37 | 90 |
| o | Xanthobacter sp. DMC5 | GFF3970 | | ATP synthase epsilon chain | insig. | 38 | 89 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS04015 | | ATP synthase subunit epsilon | no data | 33 | 89 |
| | Bosea sp. OAE506 | ABIE41_RS07905 | | F0F1 ATP synthase subunit epsilon | no data | 34 | 74 |
| | Rhodospirillum rubrum S1H | Rru_A1227 | | H+-transporting two-sector ATPase, delta/epsilon subunit (NCBI) | no data | 39 | 69 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS20930 | | ATP synthase epsilon chain | no data | 34 | 81 |
| | Sinorhizobium meliloti 1021 | SMc02502 | | F0F1 ATP synthase subunit epsilon | no data | 34 | 63 |
| | Rhizobium sp. OAE497 | ABIE40_RS17900 | | F0F1 ATP synthase subunit epsilon | no data | 32 | 73 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c25080 | | ATP synthase epsilon chain | no data | 34 | 69 |
| | Agrobacterium fabrum C58 | Atu2621 | | ATP synthase epsilon chain | no data | 34 | 68 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2316 | atpE | F0F1 ATP synthase subunit epsilon | strong | 30 | 74 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0712 | | ATP synthase epsilon chain (NCBI ptt file) | no data | 36 | 54 |
| | Caulobacter crescentus NA1000 | CCNA_03558 | | ATP synthase epsilon chain | no data | 34 | 59 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03558 | | ATP synthase epsilon chain | no data | 34 | 59 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS15085 | | ATP synthase F1 subunit epsilon | cofit | 33 | 56 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02414 | | ATP synthase, delta/epsilon subunit, beta-sandwich domain protein | strong | 34 | 53 |
| | Dinoroseobacter shibae DFL-12 | Dshi_2933 | | ATP synthase F1, epsilon subunit (RefSeq) | no data | 33 | 80 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS12715 | | ATP synthase F1 subunit epsilon | no data | 34 | 57 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00620 | | ATP synthase F1 subunit epsilon | no data | 32 | 56 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS09710 | | ATP synthase F1 subunit epsilon | no data | 32 | 69 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0972 | | ATP synthase F1 subcomplex epsilon subunit | no data | 31 | 59 |
| | Sphingobium sp. HT1-2 | GFF4558 | | ATP synthase epsilon chain (EC 3.6.3.14) | no data | 34 | 59 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS14975 | | F0F1 ATP synthase subunit epsilon | no data | 36 | 49 |
| | Fusobacterium nucleatum SB010 | HUW76_03085 | | ATP synthase F1 subunit epsilon | strong | 30 | 71 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1767 | | ATP synthase, F1 epsilon subunit (delta in mitochondria) | no data | 28 | 59 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS06400 | | ATP synthase F1 subunit epsilon | no data | 30 | 54 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS15775 | | ATP synthase subunit epsilon | no data | 29 | 56 |
| | Bifidobacterium breve UCC2003 | BBR_RS12030 | | F0F1 ATP synthase subunit epsilon | sig. | 29 | 62 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS27610 | | F0F1 ATP synthase subunit epsilon | no data | 28 | 73 |
| | Cellulophaga baltica 18 | M666_RS03535 | | F0F1 ATP synthase subunit epsilon | no data | 30 | 56 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS18660 | | hypothetical protein | insig. | 35 | 49 |
| | Mycobacterium tuberculosis H37Rv | Rv1311 | | Probable ATP synthase epsilon chain AtpC | no data | 26 | 66 |