Homologs of rpmB from Shewanella oneidensis MR-1

rpmB: ribosomal protein L28 (NCBI ptt file)
SEED: LSU ribosomal protein L28p
KEGG: large subunit ribosomal protein L28

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Shewanella sp. ANA-3 Shewana3_3769 rpmB 50S ribosomal protein L28 (RefSeq) no data 100 100
  Shewanella oneidensis MR-1 SO4247 rpmB ribosomal protein L28 (NCBI ptt file) no data 100 100
o Shewanella loihica PV-4 Shew_3480 ribosomal protein L28 (RefSeq) no data 96 100
o Shewanella amazonensis SB2B Sama_0328 rpmB 50S ribosomal protein L28 (RefSeq) no data 95 100
o Marinobacter adhaerens HP15 HP15_3322 ribosomal protein L28 no data 81 99
o Escherichia coli BL21 ECD_03494 50S ribosomal subunit protein L28 no data 79 99
o Escherichia fergusonii Becca EFB2_00176 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECOR27 NOLOHH_07505 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECOR38 HEPCGN_14450 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC101 OKFHMN_15625 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC101 MCAODC_06135 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC102 NIAGMN_13385 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC62 BNILDI_04010 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC98 JDDGAC_19250 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli ECRC99 KEDOAH_12525 rpmB 50S ribosomal protein L28 no data 79 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00065 50S ribosomal protein L28 no data 79 99
o Escherichia coli Nissle 1917 ECOLIN_RS20725 50S ribosomal protein L28 no data 79 99
o Escherichia coli BW25113 b3637 rpmB 50S ribosomal protein L28 (NCBI) no data 79 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_01160 50S ribosomal protein L28 no data 77 100
o Dickeya dadantii 3937 DDA3937_RS20510 50S ribosomal protein L28 no data 79 99
o Dickeya dianthicola 67-19 HGI48_RS00705 50S ribosomal protein L28 no data 79 99
o Dickeya dianthicola ME23 DZA65_RS00760 50S ribosomal protein L28 no data 79 99
o Serratia liquefaciens MT49 IAI46_24820 50S ribosomal protein L28 no data 79 99
o Rahnella sp. WP5 EX31_RS14465 50S ribosomal protein L28 no data 79 99
o Pectobacterium carotovorum WPP14 HER17_RS20825 50S ribosomal protein L28 no data 79 99
o Enterobacter asburiae PDN3 EX28DRAFT_3887 LSU ribosomal protein L28P no data 78 99
o Enterobacter sp. TBS_079 MPMX20_00098 50S ribosomal protein L28 no data 78 99
o Klebsiella michiganensis M5al BWI76_RS27360 50S ribosomal protein L28 no data 78 99
o Pantoea sp. MT58 IAI47_00625 50S ribosomal protein L28 no data 77 99
o Alteromonas macleodii MIT1002 MIT1002_00054 50S ribosomal protein L28 no data 74 100
o Pseudomonas sp. S08-1 OH686_13630 ribosomal protein L28 no data 78 100
o Erwinia tracheiphila SCR3 LU632_RS21985 rpmB 50S ribosomal protein L28 no data 77 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0780 ribosomal protein L28 no data 76 100
o Pseudomonas stutzeri RCH2 Psest_4227 ribosomal protein L28 no data 76 100
o Pseudomonas fluorescens SBW25 PFLU_RS29435 50S ribosomal protein L28 no data 76 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29435 50S ribosomal protein L28 no data 76 97
o Pseudomonas fluorescens FW300-N2C3 AO356_12555 50S ribosomal protein L28 no data 76 97
o Pseudomonas simiae WCS417 PS417_27760 50S ribosomal protein L28 no data 77 96
o Acinetobacter radioresistens SK82 MPMX26_00375 50S ribosomal protein L28 no data 72 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS04715 50S ribosomal protein L28 no data 75 97
o Ralstonia solanacearum GMI1000 RS_RS12275 50S ribosomal protein L28 no data 75 97
o Ralstonia solanacearum PSI07 RPSI07_RS12670 50S ribosomal protein L28 no data 75 97
o Ralstonia solanacearum UW163 UW163_RS08955 50S ribosomal protein L28 no data 75 97
o Pseudomonas fluorescens FW300-N2E3 AO353_09210 50S ribosomal protein L28 no data 75 97
o Pseudomonas sp. RS175 PFR28_04410 50S ribosomal protein L28 no data 75 97
o Pseudomonas syringae pv. syringae B728a Psyr_0224 LSU ribosomal protein L28P no data 76 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0224 LSU ribosomal protein L28P no data 76 97
o Castellaniella sp019104865 MT123 ABCV34_RS00870 50S ribosomal protein L28 no data 74 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS00335 50S ribosomal protein L28 no data 74 97
o Pseudomonas putida KT2440 PP_5282 50S ribosomal protein L28 no data 71 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS03080 50S ribosomal protein L28 no data 72 97
o Dechlorosoma suillum PS Dsui_1535 ribosomal protein L28 no data 72 97
o Cupriavidus basilensis FW507-4G11 RR42_RS17000 50S ribosomal protein L28 no data 72 97
o Burkholderia phytofirmans PsJN BPHYT_RS15630 50S ribosomal protein L28 no data 70 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04067 LSU ribosomal protein L28P no data 68 97
o Paraburkholderia graminis OAS925 ABIE53_003290 large subunit ribosomal protein L28 no data 68 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF772 LSU ribosomal protein L28p no data 70 97
o Herbaspirillum seropedicae SmR1 HSERO_RS05940 50S ribosomal protein L28 no data 69 100
o Variovorax sp. OAS795 ABID97_RS07810 50S ribosomal protein L28 no data 68 97
o Acidovorax sp. GW101-3H11 Ac3H11_1701 LSU ribosomal protein L28p no data 68 97
o Variovorax sp. SCN45 GFF6039 LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent no data 68 97
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13260 50S ribosomal protein L28 no data 65 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF372 LSU ribosomal protein L28p no data 77 83
o Lysobacter sp. OAE881 ABIE51_RS01700 50S ribosomal protein L28 no data 62 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5126.1 LSU ribosomal protein L28p no data 65 100
o Rhodanobacter denitrificans MT42 LRK55_RS10540 50S ribosomal protein L28 no data 64 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS10850 50S ribosomal protein L28 no data 64 100
o Rhodanobacter sp. FW510-T8 OKGIIK_13025 rpmB 50S ribosomal protein L28 no data 64 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4379 LSU ribosomal protein L28p no data 73 82
o Pseudomonas fluorescens GW456-L13 PfGW456L13_800 LSU ribosomal protein L28p no data 73 82
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2128 LSU ribosomal protein L28p no data 72 82
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0576 ribosomal protein L28 no data 50 97
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15660 50S ribosomal protein L28 no data 52 96
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16345 50S ribosomal protein L28 no data 49 96
o Bacteroides ovatus ATCC 8483 BACOVA_00741 ribosomal protein L28 no data 44 96
o Bacteroides stercoris CC31F HMPREF1181_RS16320 50S ribosomal protein L28 no data 43 96
o Bacteroides thetaiotaomicron VPI-5482 BT0916 50S ribosomal protein L28 (NCBI ptt file) no data 43 96
o Phocaeicola dorei CL03T12C01 ABI39_RS17110 50S ribosomal protein L28 no data 41 96
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS04110 50S ribosomal protein L28 no data 41 96
o Mycobacterium tuberculosis H37Rv Rv2058c 50S ribosomal protein L28 RpmB2 insig. 51 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS01965 50S ribosomal protein L28 no data 43 96
  Phaeobacter inhibens DSM 17395 PGA1_c24170 50S ribosomal protein L28 no data 51 81
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15405 50S ribosomal protein L28 no data 39 97
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1447 ribosomal protein L28 no data 52 81
  Magnetospirillum magneticum AMB-1 AMB_RS01625 50S ribosomal protein L28 no data 49 81
  Azospirillum brasilense Sp245 AZOBR_RS19005 50S ribosomal protein L28 no data 52 81
  Dinoroseobacter shibae DFL-12 Dshi_2583 ribosomal protein L28 (RefSeq) no data 49 81
o Synechococcus elongatus PCC 7942 Synpcc7942_0042 rpmB 50S ribosomal protein L28 strong 48 91
  Azospirillum sp. SherDot2 MPMX19_02174 50S ribosomal protein L28 no data 49 81
  Rhizobium sp. OAE497 ABIE40_RS17625 50S ribosomal protein L28 no data 48 81
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS15500 50S ribosomal protein L28 no data 41 100
  Rhodopseudomonas palustris CGA009 TX73_002560 50S ribosomal protein L28 insig. 46 81
  Agrobacterium fabrum C58 Atu3617 50S ribosomal protein L28 no data 46 81
  Caulobacter crescentus NA1000 CCNA_00699 LSU ribosomal protein L28P strong 44 81
  Caulobacter crescentus NA1000 Δfur CCNA_00699 LSU ribosomal protein L28P no data 44 81
  Rhodospirillum rubrum S1H Rru_A0210 Ribosomal protein L28 (NCBI) no data 44 81
  Sinorhizobium meliloti 1021 SMc00704 50S ribosomal protein L28 no data 44 81
  Bosea sp. OAE506 ABIE41_RS07280 50S ribosomal protein L28 no data 38 81
  Desulfovibrio vulgaris Hildenborough JW710 DVU1211 rpmB ribosomal protein L28 (TIGR) no data 53 51
  Mycobacterium tuberculosis H37Rv Rv0105c 50S ribosomal protein L28-1 RpmB1 no data 42 76