Homologs of rpoD from Escherichia coli BW25113

rpoD: RNA polymerase sigma factor (NCBI)
SEED: RNA polymerase sigma factor RpoD
KEGG: RNA polymerase primary sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli BW25113 b3067 rpoD RNA polymerase sigma factor (NCBI) no data 100 100
o Escherichia coli BL21 ECD_02937 RNA polymerase, sigma 70 (sigma D) factor no data 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00635 RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECOR27 NOLOHH_10445 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECOR38 HEPCGN_17510 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC100 OKFHMN_18655 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC101 MCAODC_09170 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC102 NIAGMN_16420 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC62 BNILDI_01070 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC98 JDDGAC_22290 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia coli ECRC99 KEDOAH_09490 rpoD RNA polymerase sigma factor RpoD no data 100 100
o Escherichia fergusonii Becca EFB2_00744 RNA polymerase sigma factor RpoD no data 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3177 RNA polymerase sigma factor RpoD no data 97 100
o Enterobacter asburiae PDN3 EX28DRAFT_3102 RNA polymerase, sigma 70 subunit, RpoD no data 96 100
o Enterobacter sp. TBS_079 MPMX20_03909 RNA polymerase sigma factor RpoD no data 96 100
o Klebsiella michiganensis M5al BWI76_RS24555 RNA polymerase sigma factor RpoD no data 96 100
o Klebsiella pneumoniae MKP103 KDGMDA_05365 RNA polymerase sigma factor RpoD no data 96 100
o Serratia liquefaciens MT49 IAI46_22125 RNA polymerase sigma factor RpoD no data 91 100
o Pectobacterium carotovorum WPP14 HER17_RS18415 RNA polymerase sigma factor RpoD no data 92 100
o Erwinia amylovora T8 OLJFJH_07585 RNA polymerase sigma factor RpoD no data 93 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11870 RNA polymerase sigma factor RpoD no data 91 100
o Pantoea sp. MT58 IAI47_03050 RNA polymerase sigma factor RpoD no data 90 100
o Rahnella sp. WP5 EX31_RS08195 RNA polymerase sigma factor RpoD no data 91 100
o Erwinia tracheiphila SCR3 LU632_RS20725 rpoD RNA polymerase sigma factor RpoD no data 91 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_14330 rpoD RNA polymerase sigma factor RpoD no data 91 100
o Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 90 100
o Dickeya dianthicola ME23 DZA65_RS03105 RNA polymerase sigma factor RpoD no data 90 100
o Dickeya dianthicola 67-19 HGI48_RS03110 RNA polymerase sigma factor RpoD no data 90 100
o Shewanella sp. ANA-3 Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD (RefSeq) no data 78 100
o Shewanella oneidensis MR-1 SO1284 rpoD RNA polymerase sigma-70 factor (NCBI ptt file) no data 78 100
o Alteromonas macleodii MIT1002 MIT1002_00733 Sigma-70 no data 79 100
o Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 78 100
o Shewanella loihica PV-4 Shew_0996 RpoD family RNA polymerase sigma factor (RefSeq) no data 79 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_02745 RNA polymerase sigma factor RpoD no data 77 100
o Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 67 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 67 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 68 100
o Pseudomonas sp. SVBP6 COO64_RS22580 rpoD RNA polymerase sigma factor RpoD no data 68 99
o Pseudomonas fluorescens SBW25 PFLU_RS27535 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS27535 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05296 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas simiae WCS417 PS417_25880 RNA polymerase subunit sigma-70 no data 66 99
o Pseudomonas sp. BP01 JOY50_RS18070 rpoD RNA polymerase sigma factor RpoD no data 68 99
o Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 67 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2513 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas sp. RS175 PFR28_04078 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas fluorescens FW300-N2E3 AO353_07385 RNA polymerase subunit sigma-70 no data 67 99
o Pseudomonas fluorescens FW300-N2C3 AO356_14265 RNA polymerase subunit sigma-70 no data 67 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4791 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1186 RNA polymerase sigma factor RpoD no data 67 99
o Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 66 100
o Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 66 99
o Pseudomonas sp. DMC3 GFF51 RNA polymerase sigma factor RpoD no data 67 99
o Pseudomonas sp. S08-1 OH686_14970 RNA polymerase sigma factor RpoD no data 68 99
o Pseudomonas aeruginosa PA14 IKLFDK_22530 RNA polymerase sigma factor RpoD no data 66 99
o Acinetobacter baumannii LAC-4 RR41_RS03995 RNA polymerase sigma factor RpoD no data 62 100
o Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 59 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 61 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01085 RNA polymerase sigma factor RpoD no data 61 99
o Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 61 99
o Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 61 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 61 99
o Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 60 100
o Methylophilus sp. DMC18 GFF2349 RNA polymerase sigma factor RpoD no data 60 99
o Dechlorosoma suillum PS Dsui_1209 RNA polymerase sigma factor, sigma-70 family no data 58 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 59 99
o Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 55 99
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03675 RNA polymerase sigma factor RpoD no data 57 99
  Ralstonia solanacearum UW163 UW163_RS09995 RNA polymerase sigma factor RpoD no data 57 99
o Cupriavidus basilensis FW507-4G11 RR42_RS14965 hypothetical protein strong 56 99
  Ralstonia solanacearum GMI1000 RS_RS11120 RNA polymerase sigma factor RpoD no data 57 99
  Ralstonia sp. UNC404CL21Col ABZR87_RS15600 RNA polymerase sigma factor RpoD no data 56 99
  Herbaspirillum seropedicae SmR1 HSERO_RS04365 RNA polymerase sigma factor RpoD no data 56 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS15185 RNA polymerase sigma factor RpoD strong 56 99
o Burkholderia phytofirmans PsJN BPHYT_RS33535 RNA polymerase sigma factor RpoD strong 56 99
o Paraburkholderia graminis OAS925 ABIE53_004866 RNA polymerase primary sigma factor strong 56 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06008 RNA polymerase, sigma 70 subunit, RpoD strong 56 99
  Variovorax sp. SCN45 GFF2879 RNA polymerase sigma factor RpoD no data 54 99
  Variovorax sp. OAS795 ABID97_RS10535 RNA polymerase sigma factor RpoD no data 54 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3822 RNA polymerase sigma factor RpoD no data 54 99
  Acidovorax sp. GW101-3H11 Ac3H11_194 RNA polymerase sigma factor RpoD no data 53 100
  Cupriavidus basilensis FW507-4G11 RR42_RS10750 DNA-directed RNA polymerase sigma-70 factor no data 49 99
  Paraburkholderia graminis OAS925 ABIE53_004960 RNA polymerase primary sigma factor strong 50 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03902 RNA polymerase, sigma 70 subunit, RpoD strong 51 99
  Burkholderia phytofirmans PsJN BPHYT_RS32590 RNA polymerase sigma factor RpoD no data 50 99
o Sphingobium sp. HT1-2 GFF2093 RNA polymerase sigma factor RpoD no data 47 99
o Azospirillum brasilense Sp245 AZOBR_RS10905 RNA polymerase sigma factor RpoD no data 51 99
o Azospirillum sp. SherDot2 MPMX19_00761 RNA polymerase sigma factor RpoD no data 49 99
o Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 48 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 47 99
  Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 47 99
o Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 48 99
o Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 49 99
o Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 48 99
o Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 48 99
o Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 48 99
o Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 49 99
o Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 49 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 48 99
  Ralstonia solanacearum PSI07 RPSI07_RS13555 RNA polymerase sigma factor RpoD no data 65 61