Conservation of cofitness between CSW01_04375 and CSW01_13360 in Vibrio cholerae E7946 ATCC 55056

119 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04375 SsrA-binding protein 1.0 CSW01_13360 argininosuccinate lyase 0.55 9
Escherichia coli ECRC98 0.72 JDDGAC_24790 smpB SsrA-binding protein SmpB 0.75 JDDGAC_17200 argH argininosuccinate lyase low > 87
Escherichia coli ECOR38 0.72 HEPCGN_20245 smpB SsrA-binding protein SmpB 0.75 HEPCGN_12220 argH argininosuccinate lyase — —
Escherichia coli ECRC62 0.72 BNILDI_11600 smpB SsrA-binding protein SmpB 0.75 BNILDI_05805 argH argininosuccinate lyase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01087 SsrA-binding protein 0.75 OHPLBJKB_04090 Argininosuccinate lyase low > 74
Escherichia coli ECRC99 0.72 KEDOAH_07095 smpB SsrA-binding protein SmpB 0.75 KEDOAH_14585 argH argininosuccinate lyase — —
Escherichia coli ECRC102 0.72 NIAGMN_18895 smpB SsrA-binding protein SmpB 0.74 NIAGMN_11325 argH argininosuccinate lyase — —
Escherichia coli ECRC101 0.72 MCAODC_11650 smpB SsrA-binding protein SmpB 0.75 MCAODC_04075 argH argininosuccinate lyase — —
Escherichia coli BW25113 0.72 b2620 smpB SsrA-binding protein (NCBI) 0.75 b3960 argH argininosuccinate lyase (NCBI) low > 76
Escherichia fergusonii Becca 0.72 EFB2_01273 SsrA-binding protein 0.75 EFB2_04654 Argininosuccinate lyase 0.26 63
Escherichia coli ECOR27 0.72 NOLOHH_12795 smpB SsrA-binding protein SmpB 0.75 NOLOHH_05720 argH argininosuccinate lyase — —
Escherichia coli ECRC100 0.72 OKFHMN_21125 smpB SsrA-binding protein SmpB 0.75 OKFHMN_13575 argH argininosuccinate lyase — —
Escherichia coli BL21 0.72 ECD_02508 tmRNA-binding trans-translation protein 0.75 ECD_03845 argininosuccinate lyase low > 61
Escherichia coli Nissle 1917 0.72 ECOLIN_RS14795 SsrA-binding protein SmpB 0.75 ECOLIN_RS22855 argininosuccinate lyase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4158 tmRNA-binding protein SmpB 0.74 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_03490 SsrA-binding protein 0.74 MPMX20_04520 Argininosuccinate lyase low > 85
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2723 SsrA-binding protein 0.74 EX28DRAFT_4422 argininosuccinate lyase low > 76
Dickeya dadantii 3937 0.70 DDA3937_RS04305 SsrA-binding protein SmpB 0.75 DDA3937_RS20340 argininosuccinate lyase — —
Klebsiella pneumoniae MKP103 0.70 KDGMDA_02270 SsrA-binding protein SmpB 0.76 KDGMDA_09375 argininosuccinate lyase low > 95
Dickeya dianthicola ME23 0.70 DZA65_RS04215 SsrA-binding protein SmpB 0.73 DZA65_RS00945 argininosuccinate lyase low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS04300 SsrA-binding protein SmpB 0.73 HGI48_RS00885 argininosuccinate lyase low > 71
Klebsiella michiganensis M5al 0.69 BWI76_RS21580 SsrA-binding protein 0.75 BWI76_RS00855 argininosuccinate lyase low > 92
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS14680 SsrA-binding protein SmpB 0.75 PagCFBP13505_RS18420 argininosuccinate lyase — —
Pantoea sp. MT58 0.68 IAI47_04790 SsrA-binding protein SmpB 0.75 IAI47_00920 argininosuccinate lyase — —
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_26965 smpB SsrA-binding protein SmpB 0.73 IJEDHG_13060 argH argininosuccinate lyase — —
Rahnella sp. WP5 0.68 EX31_RS21740 SsrA-binding protein SmpB 0.74 EX31_RS14180 argininosuccinate lyase — —
Erwinia tracheiphila SCR3 0.68 LU632_RS17025 smpB SsrA-binding protein SmpB 0.73 LU632_RS19600 argH argininosuccinate lyase — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS17440 SsrA-binding protein SmpB 0.73 HER17_RS20620 argininosuccinate lyase low > 75
Erwinia amylovora T8 0.67 OLJFJH_10155 SsrA-binding protein SmpB 0.74 OLJFJH_06130 argininosuccinate lyase — —
Serratia liquefaciens MT49 0.63 IAI46_19655 SsrA-binding protein SmpB 0.75 IAI46_24500 argininosuccinate lyase low > 87
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0969 SsrA-binding protein 0.21 B158DRAFT_1980 argininosuccinate lyase low > 40
Alteromonas macleodii MIT1002 0.59 MIT1002_01806 Small protein B 0.57 MIT1002_00467 Argininosuccinate lyase — —
Shewanella sp. ANA-3 0.57 Shewana3_2952 smpB SsrA-binding protein (RefSeq) 0.63 Shewana3_3901 argininosuccinate lyase (RefSeq) — —
Shewanella oneidensis MR-1 0.57 SO1473 smpB SsrA-binding protein (NCBI ptt file) 0.63 SO0279 argH argininosuccinate lyase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.55 Sama_2388 smpB SsrA-binding protein (RefSeq) 0.65 Sama_0260 argininosuccinate lyase (RefSeq) — —
Shewanella loihica PV-4 0.55 Shew_1268 smpB SsrA-binding protein (RefSeq) 0.63 Shew_0206 argininosuccinate lyase (RefSeq) — —
Marinobacter adhaerens HP15 0.55 HP15_3090 SsrA-binding protein 0.45 HP15_243 argininosuccinate lyase — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3437.1 tmRNA-binding protein SmpB 0.17 Xcc-8004.2323.1 Argininosuccinate lyase (EC 4.3.2.1) — —
Acinetobacter radioresistens SK82 0.54 MPMX26_00737 SsrA-binding protein 0.45 MPMX26_00185 Argininosuccinate lyase low > 36
Acinetobacter baumannii LAC-4 0.54 RR41_RS15055 SsrA-binding protein SmpB 0.45 RR41_RS17680 argininosuccinate lyase — —
Lysobacter sp. OAE881 0.53 ABIE51_RS11680 SsrA-binding protein SmpB 0.20 ABIE51_RS13380 argininosuccinate lyase low > 62
Pseudomonas sp. S08-1 0.53 OH686_17025 SsrA-binding protein 0.45 OH686_13885 argininosuccinate lyase low > 80
Pseudomonas stutzeri RCH2 0.52 Psest_0957 SsrA-binding protein 0.45 Psest_3751 argininosuccinate lyase — —
Pseudomonas sp. SVBP6 0.52 COO64_RS15300 smpB SsrA-binding protein SmpB 0.45 COO64_RS01210 argH argininosuccinate lyase low > 93
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS05700 SsrA-binding protein SmpB 0.18 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) low > 74
Pseudomonas sp. BP01 0.52 JOY50_RS26715 smpB SsrA-binding protein SmpB 0.45 JOY50_RS18760 argH argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05690 SsrA-binding protein 0.45 AO353_09000 argininosuccinate lyase 0.31 38
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3378 tmRNA-binding protein SmpB 0.45 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas segetis P6 0.51 MPMX49_01175 SsrA-binding protein 0.45 MPMX49_04523 Argininosuccinate lyase — —
Pseudomonas aeruginosa PUPa3 0.51 DQ20_RS52440 smpB;go_function=RNA SsrA-binding protein SmpB 0.44 DQ20_RS49925 argH;go_function=argininosuccinate argininosuccinate lyase low > 101
Pseudomonas aeruginosa MRSN321 0.51 DY961_RS09600 smpB;go_function=RNA SsrA-binding protein SmpB 0.44 DY961_RS12195 argH;go_function=argininosuccinate argininosuccinate lyase low > 100
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07540 SsrA-binding protein 0.45 AO356_12780 argininosuccinate lyase low > 104
Pseudomonas aeruginosa PA14 0.51 IKLFDK_29750 SsrA-binding protein SmpB 0.44 IKLFDK_27140 argininosuccinate lyase low > 98
Dechlorosoma suillum PS 0.51 Dsui_2675 SsrA-binding protein 0.44 Dsui_0111 argininosuccinate lyase — —
Pseudomonas putida KT2440 0.51 PP_4733 SsrA-binding protein 0.45 PP_0184 Argininosuccinate lyase — —
Pseudomonas sp. RS175 0.50 PFR28_00065 SsrA-binding protein 0.45 PFR28_04367 Argininosuccinate lyase — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_07375 smpB SsrA-binding protein SmpB 0.18 OKGIIK_09430 argH argininosuccinate lyase low > 53
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS11435 SsrA-binding protein SmpB 0.18 LRK53_RS07565 argininosuccinate lyase — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS17925 SsrA-binding protein SmpB 0.18 LRK54_RS02380 argininosuccinate lyase — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS17780 SsrA-binding protein SmpB 0.18 LRK55_RS02135 argininosuccinate lyase — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS17000 SsrA-binding protein SmpB 0.40 RPSI07_RS13080 argininosuccinate lyase — —
Ralstonia solanacearum GMI1000 0.49 RS_RS07145 SsrA-binding protein 0.41 RS_RS11865 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_4203 SsrA-binding protein 0.46 Psyr_0065 argininosuccinate lyase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_4203 SsrA-binding protein 0.46 Psyr_0065 argininosuccinate lyase — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS00490 SsrA-binding protein SmpB 0.42 RALBFv3_RS04280 argininosuccinate lyase — —
Ralstonia solanacearum UW163 0.49 UW163_RS13820 SsrA-binding protein SmpB 0.42 UW163_RS09390 argininosuccinate lyase — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1184 tmRNA-binding protein SmpB 0.45 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) — —
Pseudomonas sp. DMC3 0.48 GFF4965 SsrA-binding protein 0.45 GFF359 Argininosuccinate lyase low > 89
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS11940 SsrA-binding protein SmpB 0.42 ABZR87_RS16170 argininosuccinate lyase low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS11775 single-stranded DNA-binding protein 0.40 RR42_RS15925 argininosuccinate lyase — —
Methylophilus sp. DMC18 0.48 GFF1142 SsrA-binding protein 0.46 GFF2150 Argininosuccinate lyase — —
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_5112 tmRNA-binding protein SmpB 0.45 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) low > 87
Castellaniella sp019104865 MT123 0.47 ABCV34_RS04010 SsrA-binding protein SmpB 0.44 ABCV34_RS03060 argininosuccinate lyase — —
Pseudomonas simiae WCS417 0.47 PS417_24095 SsrA-binding protein 0.45 PS417_27540 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.45 PFLU_RS29220 argininosuccinate lyase — —
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04969 SsrA-binding protein 0.45 GEMAOFIL_05646 Argininosuccinate lyase — —
Pseudomonas orientalis W4I3 0.47 QF045_RS26350 SsrA-binding protein SmpB 0.45 QF045_RS01900 argininosuccinate lyase — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.45 PFLU_RS29220 argininosuccinate lyase — —
Variovorax sp. OAS795 0.47 ABID97_RS16435 SsrA-binding protein SmpB 0.43 ABID97_RS08190 argininosuccinate lyase — —
Variovorax sp. SCN45 0.46 GFF213 tmRNA-binding protein SmpB 0.43 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) — —
Paraburkholderia graminis OAS925 0.46 ABIE53_002482 SsrA-binding protein 0.41 ABIE53_001311 argininosuccinate lyase — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12040 single-stranded DNA-binding protein 0.40 BPHYT_RS05210 argininosuccinate lyase — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00630 SsrA-binding protein 0.41 H281DRAFT_00194 argininosuccinate lyase — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2861 tmRNA-binding protein SmpB 0.43 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS11000 single-stranded DNA-binding protein 0.42 HSERO_RS14685 argininosuccinate lyase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4352 tmRNA-binding protein SmpB 0.42 GFF736 Argininosuccinate lyase (EC 4.3.2.1) — —
Caulobacter crescentus NA1000 0.42 CCNA_01254 SsrA-binding protein 0.41 CCNA_02294 argininosuccinate lyase — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06520 SsrA-binding protein SmpB 0.39 QEN71_RS24970 argininosuccinate lyase — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01254 SsrA-binding protein 0.41 CCNA_02294 argininosuccinate lyase — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_0147 SsrA-binding protein (RefSeq) 0.41 Dshi_3062 argininosuccinate lyase (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS05480 SsrA-binding protein SmpB 0.41 A4249_RS12555 argininosuccinate lyase — —
Rhizobium sp. OAE497 0.41 ABIE40_RS06035 SsrA-binding protein SmpB 0.43 ABIE40_RS17520 argininosuccinate lyase — —
Rhodospirillum rubrum S1H 0.41 Rru_A1864 SmpB protein (NCBI) 0.42 Rru_A0397 Argininosuccinate lyase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.40 PGA1_c29450 SsrA-binding protein SmpB 0.43 PGA1_c03450 argininosuccinate lyase ArgH — —
Desulfovibrio vulgaris Hildenborough JW710 0.40 DVU0828 smpB SsrA-binding protein (TIGR) 0.41 DVU1094 argH argininosuccinate lyase (TIGR) — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0212 SsrA-binding protein 0.40 Ga0059261_2049 argininosuccinate lyase — —
Sphingobium sp. HT1-2 0.40 GFF3116 tmRNA-binding protein SmpB 0.39 GFF3793 Argininosuccinate lyase (EC 4.3.2.1) — —
Sinorhizobium meliloti 1021 0.39 SMc02405 SsrA-binding protein 0.43 SMc00725 argininosuccinate lyase — —
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_1795 smpB SsrA-binding protein 0.44 Synpcc7942_2475 argH argininosuccinate lyase — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2876 smpB SsrA-binding protein (RefSeq) 0.40 DvMF_0048 argininosuccinate lyase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.38 AMB_RS12810 SsrA-binding protein 0.41 AMB_RS22715 argininosuccinate lyase — —
Azospirillum sp. SherDot2 0.38 MPMX19_01218 SsrA-binding protein 0.45 MPMX19_05817 Argininosuccinate lyase — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS08425 single-stranded DNA-binding protein 0.45 AZOBR_RS16935 argininosuccinate lyase — —
Synechocystis sp000284455 PCC 6803 0.38 SGL_RS11585 SsrA-binding protein SmpB 0.43 SGL_RS05520 argininosuccinate lyase — —
Agrobacterium fabrum C58 0.37 Atu1025 SSRA-binding protein 0.42 Atu3599 argininosuccinate lyase — —
Rhodopseudomonas palustris CGA009 0.37 TX73_013930 SsrA-binding protein SmpB 0.41 TX73_024645 argininosuccinate lyase — —
Mycobacterium tuberculosis H37Rv 0.36 Rv3100c Probable SSRA-binding protein SmpB 0.33 Rv1659 Probable argininosuccinate lyase ArgH — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_2086 SsrA-binding protein 0.24 Echvi_3852 arginosuccinate lyase (EC 4.3.2.1) (from data) — —
Bosea sp. OAE506 0.35 ABIE41_RS19950 SsrA-binding protein SmpB 0.42 ABIE41_RS08750 argininosuccinate lyase — —
Xanthobacter sp. DMC5 0.34 GFF405 SsrA-binding protein 0.44 GFF3839 Argininosuccinate lyase — —
Bifidobacterium breve UCC2003 0.33 BBR_RS13045 SsrA-binding protein 0.33 BBR_RS13955 argininosuccinate lyase — —
Cellulophaga baltica 18 0.31 M666_RS17575 SsrA-binding protein SmpB 0.23 M666_RS02670 argininosuccinate lyase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_04675 SsrA-binding protein 0.22 CA264_06225 argininosuccinate lyase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS00810 SsrA-binding protein SmpB 0.24 ABZR88_RS12070 argininosuccinate lyase — —
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS12595 SsrA-binding protein 0.24 ABI39_RS07095 argininosuccinate lyase — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS16680 SsrA-binding protein 0.23 HMPREF1058_RS09585 argininosuccinate lyase — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS04945 SsrA-binding protein 0.22 HMPREF1181_RS03410 argininosuccinate lyase — —
Bacteroides ovatus ATCC 8483 0.26 BACOVA_01261 SsrA-binding protein 0.23 BACOVA_03551 argininosuccinate lyase low > 96
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS14950 SsrA-binding protein 0.22 HMPREF1078_RS11315 argininosuccinate lyase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0179 SsrA-binding protein (NCBI ptt file) 0.23 BT3733 arginosuccinate lyase (EC 4.3.2.1) (from data) — —

Not shown: 2 genomes with orthologs for CSW01_04375 only; 2 genomes with orthologs for CSW01_13360 only