Conservation of cofitness between CSW01_02080 and CSW01_03705 in Vibrio cholerae E7946 ATCC 55056

120 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02080 UvrABC system protein A 1.0 CSW01_03705 chaperone protein ClpB 0.54 5
Klebsiella pneumoniae MKP103 0.83 KDGMDA_10400 excinuclease ABC subunit UvrA 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF1429 Excinuclease ABC subunit A 0.78 GFF4184 ClpB protein low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_4246 excinuclease ABC, A subunit 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB low > 76
Klebsiella michiganensis M5al 0.82 BWI76_RS01950 excinuclease ABC subunit A 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB low > 92
Serratia liquefaciens MT49 0.82 IAI46_22905 excinuclease ABC subunit UvrA 0.77 IAI46_03995 ATP-dependent chaperone ClpB low > 87
Rahnella sp. WP5 0.82 EX31_RS11990 excinuclease ABC subunit UvrA 0.76 EX31_RS07560 ATP-dependent chaperone ClpB low > 89
Enterobacter sp. TBS_079 0.82 MPMX20_00276 UvrABC system protein A 0.78 MPMX20_03461 Chaperone protein ClpB low > 85
Escherichia coli ECRC101 0.82 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB low > 87
Escherichia fergusonii Becca 0.82 EFB2_04533 UvrABC system protein A 0.78 EFB2_01298 Chaperone protein ClpB 0.60 81
Escherichia coli ECRC98 0.82 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB low > 87
Escherichia coli ECRC102 0.82 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB low > 80
Escherichia coli ECRC99 0.82 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB — —
Escherichia coli Nissle 1917 0.82 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB — —
Escherichia coli ECRC62 0.82 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03983 UvrABC system protein A 0.78 OHPLBJKB_01114 Chaperone protein ClpB low > 74
Escherichia coli BW25113 0.82 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.78 b2592 clpB protein disaggregation chaperone (NCBI) low > 76
Escherichia coli ECOR27 0.82 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB low > 76
Escherichia coli ECRC100 0.82 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB low > 79
Escherichia coli ECOR38 0.82 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB low > 88
Escherichia coli BL21 0.82 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.78 ECD_02482 protein disaggregation chaperone low > 61
Pectobacterium carotovorum WPP14 0.82 HER17_RS03550 excinuclease ABC subunit UvrA 0.77 HER17_RS05410 ATP-dependent chaperone ClpB low > 75
Shewanella amazonensis SB2B 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.80 Sama_2603 clpB protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.80 Shewana3_3169 ATPase (RefSeq) low > 73
Shewanella loihica PV-4 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.80 Shew_2948 ATPase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.80 SO3577 clpB clpB protein (NCBI ptt file) low > 76
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB low > 74
Erwinia tracheiphila SCR3 0.81 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB low > 73
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB low > 61
Erwinia amylovora T8 0.81 OLJFJH_03425 excinuclease ABC subunit UvrA 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB low > 58
Dickeya dadantii 3937 0.81 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB low > 74
Dickeya dianthicola ME23 0.81 DZA65_RS18735 excinuclease ABC subunit UvrA 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS17610 excinuclease ABC subunit UvrA 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB low > 71
Pantoea sp. MT58 0.81 IAI47_17815 excinuclease ABC subunit UvrA 0.77 IAI47_04435 ATP-dependent chaperone ClpB low > 76
Alteromonas macleodii MIT1002 0.81 MIT1002_00179 Excinuclease ABC subunit A 0.78 MIT1002_02677 Heat shock protein F84.1 low > 70
Pseudomonas aeruginosa MRSN321 0.77 DY961_RS29405 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.71 DY961_RS23740 clpB;go_function=ATP ATP-dependent chaperone ClpB 0.22 66
Pseudomonas aeruginosa PA14 0.77 IKLFDK_21795 excinuclease ABC subunit UvrA 0.71 IKLFDK_00820 Chaperone protein ClpB low > 98
Pseudomonas aeruginosa PUPa3 0.77 DQ20_RS43730 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.71 DQ20_RS56205 clpB;go_function=ATP ATP-dependent chaperone ClpB low > 101
Pseudomonas sp. S08-1 0.77 OH686_15495 excinuclease ABC subunit A 0.71 OH686_16420 ATP-dependent chaperone protein ClpB low > 80
Pseudomonas sp. DMC3 0.77 GFF3792 UvrABC system protein A 0.70 GFF4006 Chaperone protein ClpB low > 89
Pseudomonas sp. RS175 0.77 PFR28_03974 UvrABC system protein A 0.71 PFR28_03746 Chaperone protein ClpB low > 88
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB low > 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_4520 Excinuclease ABC subunit A 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas sp. BP01 0.77 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB low > 84
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_4520 Excinuclease ABC subunit A 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_2611 Excinuclease ABC subunit A 0.71 Pf1N1B4_2824 ClpB protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB low > 109
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB low > 109
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14785 ABC-ATPase UvrA 0.71 AO356_15935 ATP-dependent chaperone ClpB low > 104
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_05194 UvrABC system protein A 0.71 GEMAOFIL_00971 Chaperone protein ClpB low > 96
Pseudomonas simiae WCS417 0.77 PS417_25395 excinuclease ABC subunit A 0.71 PS417_03830 protein disaggregation chaperone 0.21 69
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4888 Excinuclease ABC subunit A 0.71 Pf6N2E2_5129 ClpB protein low > 103
Pseudomonas sp. SVBP6 0.77 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB low > 93
Pseudomonas putida KT2440 0.77 PP_0483 excinuclease (uvrABC system protein A) 0.70 PP_0625 Chaperone protein ClpB — —
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_1283 Excinuclease ABC subunit A 0.71 PfGW456L13_1495 ClpB protein low > 87
Pseudomonas orientalis W4I3 0.77 QF045_RS27415 excinuclease ABC subunit UvrA 0.71 QF045_RS06815 ATP-dependent chaperone ClpB low > 93
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_06855 ABC-ATPase UvrA 0.70 AO353_14230 ATP-dependent chaperone ClpB low > 101
Pseudomonas stutzeri RCH2 0.76 Psest_3576 excinuclease ABC, A subunit 0.71 Psest_0711 ATP-dependent chaperone ClpB low > 67
Pseudomonas segetis P6 0.76 ACVTMO_RS04790 uvrA excinuclease ABC subunit UvrA 0.70 ACVTMO_RS19430 clpB ATP-dependent chaperone ClpB low > 75
Marinobacter adhaerens HP15 0.74 HP15_406 excinuclease ABC, ATPase subunit (A) 0.74 HP15_529 protein disaggregation chaperone low > 73
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB low > 59
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.70 Xcc-8004.1382.1 ClpB protein low > 74
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.74 10
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB low > 59
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB low > 74
Dechlorosoma suillum PS 0.71 Dsui_1622 excinuclease ABC, A subunit 0.67 Dsui_2161 ATP-dependent chaperone ClpB low > 51
Acinetobacter baumannii LAC-4 0.70 RR41_RS01040 excinuclease ABC subunit UvrA 0.63 RR41_RS10060 ATP-dependent chaperone ClpB low > 55
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.64 MPMX26_01096 Chaperone protein ClpB low > 36
Methylophilus sp. DMC18 0.69 GFF2008 UvrABC system protein A 0.68 GFF1788 Chaperone protein ClpB low > 43
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS19810 excinuclease ABC subunit A 0.65 HSERO_RS10545 protein disaggregation chaperone low > 78
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS02970 excinuclease ABC subunit A 0.67 BPHYT_RS08990 protein disaggregation chaperone low > 109
Paraburkholderia graminis OAS925 0.68 ABIE53_000732 excinuclease ABC subunit A 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_01913 Excinuclease ABC subunit A 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB low > 103
Ralstonia solanacearum GMI1000 0.68 RS_RS02080 excinuclease ABC subunit UvrA 0.65 RS_RS06695 chaperone protein ClpB low > 80
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB low > 80
Ralstonia solanacearum PSI07 0.68 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB low > 81
Ralstonia solanacearum UW163 0.68 UW163_RS02345 excinuclease ABC subunit UvrA 0.65 UW163_RS13360 ATP-dependent chaperone ClpB — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB low > 76
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS01825 excinuclease ABC subunit UvrA 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB low > 153
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02145 excinuclease ABC subunit A 0.65 RR42_RS12455 protein disaggregation chaperone low > 128
Variovorax sp. SCN45 0.65 GFF4944 Excinuclease ABC subunit A 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) low > 127
Variovorax sp. OAS795 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB low > 91
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.65 Ac3H11_1474 ClpB protein low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF2755 Excinuclease ABC subunit A 0.64 GFF3942 ClpB protein low > 90
Castellaniella sp019104865 MT123 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB low > 48
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.56 TX73_023005 ATP-dependent chaperone ClpB 0.52 37
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.56 CCNA_00922 ClpB protein low > 67
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.56 CCNA_00922 ClpB protein low > 66
Xanthobacter sp. DMC5 0.60 GFF749 UvrABC system protein A 0.54 GFF3670 Chaperone protein ClpB — —
Rhodospirillum rubrum S1H 0.60 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.56 Rru_A0753 Chaperone clpB (NCBI) low > 58
Azospirillum sp. SherDot2 0.60 MPMX19_01152 UvrABC system protein A 0.58 MPMX19_02442 Chaperone protein ClpB low > 112
Sphingobium sp. HT1-2 0.59 GFF1696 Excinuclease ABC subunit A 0.55 GFF1039 Chaperone protein ClpB (ATP-dependent unfoldase) low > 95
Phaeobacter inhibens DSM 17395 0.59 PGA1_c17370 uvrABC system protein A 0.55 PGA1_c32440 chaperone protein ClpB low > 62
Azospirillum brasilense Sp245 0.59 AZOBR_RS15370 excinuclease ABC subunit A 0.58 AZOBR_RS18950 ATPase AAA low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.58 A4249_RS08575 excinuclease ABC subunit UvrA 0.56 A4249_RS11010 ATP-dependent chaperone ClpB low > 48
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_0674 excinuclease ABC, A subunit 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS12410 excinuclease ABC subunit UvrA 0.55 AMB_RS07865 ATP-dependent chaperone ClpB low > 64
Bosea sp. OAE506 0.58 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB low > 77
Rhizobium sp. OAE497 0.58 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB low > 107
Agrobacterium fabrum C58 0.57 Atu1513 ABC excinuclease subunit A 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit low > 89
Sinorhizobium meliloti 1021 0.57 SMc01235 excinuclease ABC subunit A 0.55 SMc02433 ATP-dependent protease low > 103
Mycobacterium tuberculosis H37Rv 0.56 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.53 Rv0384c Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) — —
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.55 Synpcc7942_1089 clpB ATPase low > 38
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS06380 excinuclease ABC subunit UvrA 0.55 SGL_RS11615 ATP-dependent chaperone ClpB low > 52
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.52 BBR_RS19700 ATP-dependent chaperone ClpB low > 34
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.51 HUW76_09935 ATP-dependent chaperone ClpB low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_1138 excinuclease ABC, A subunit 0.50 Echvi_0754 ATP-dependent chaperone ClpB low > 79
Cellulophaga baltica 18 0.50 M666_RS15455 excinuclease ABC subunit UvrA 0.52 M666_RS14965 ATP-dependent chaperone ClpB low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_18100 ABC-ATPase UvrA 0.52 CA264_14135 ATP-dependent chaperone ClpB low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.54 DVU1874 clpB ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) low > 55
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.51 CA265_RS12775 ATP-dependent chaperone ClpB low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB low > 71
Bacteroides thetaiotaomicron VPI-5482 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.52 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.48 BACOVA_03703 excinuclease ABC, A subunit 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB low > 96
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS15330 excinuclease ABC subunit UvrA 0.51 ABI39_RS18885 ATP-dependent chaperone ClpB low > 72
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.51 HMPREF1058_RS04980 ATP-dependent chaperone ClpB low > 67
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.52 HMPREF1078_RS00500 ATP-dependent chaperone ClpB low > 61
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.54 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) low > 51
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.53 HMPREF1181_RS11960 ATP-dependent chaperone ClpB low > 56

Not shown: 2 genomes with orthologs for CSW01_02080 only; 1 genomes with orthologs for CSW01_03705 only