Conservation of cofitness between CSW01_05185 and CSW01_02080 in Vibrio cholerae E7946 ATCC 55056

116 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05185 excinuclease ABC subunit UvrB 1.0 CSW01_02080 UvrABC system protein A 0.55 6
Serratia liquefaciens MT49 0.78 IAI46_06550 excinuclease ABC subunit B 0.82 IAI46_22905 excinuclease ABC subunit UvrA 0.58 12
Erwinia tracheiphila SCR3 0.77 LU632_RS09160 uvrB excinuclease ABC subunit B 0.81 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.40 39
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_19590 uvrB excinuclease ABC subunit UvrB 0.81 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA low > 61
Pectobacterium carotovorum WPP14 0.77 HER17_RS13420 excinuclease ABC subunit B 0.82 HER17_RS03550 excinuclease ABC subunit UvrA 0.51 39
Rahnella sp. WP5 0.77 EX31_RS23720 excinuclease ABC subunit B 0.82 EX31_RS11990 excinuclease ABC subunit UvrA 0.64 1
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS03805 excinuclease ABC subunit B 0.81 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.79 33
Pantoea sp. MT58 0.76 IAI47_13505 excinuclease ABC subunit B 0.81 IAI47_17815 excinuclease ABC subunit UvrA 0.74 1
Escherichia coli ECRC100 0.76 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB 0.82 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA low > 79
Escherichia coli ECRC62 0.76 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.82 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.75 15
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02934 UvrABC system protein B 0.82 OHPLBJKB_03983 UvrABC system protein A low > 74
Escherichia coli ECRC101 0.76 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.82 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.52 2
Escherichia coli ECRC102 0.76 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB 0.82 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.83 8
Escherichia coli ECRC99 0.76 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB 0.82 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECOR27 0.76 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB 0.82 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 76
Escherichia coli BW25113 0.76 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.82 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.93 1
Escherichia coli ECRC98 0.76 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.82 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA low > 87
Escherichia coli Nissle 1917 0.76 ECOLIN_RS04150 excinuclease ABC subunit UvrB 0.82 ECOLIN_RS23485 excinuclease ABC subunit UvrA low > 55
Escherichia coli BL21 0.76 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.82 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.84 1
Escherichia fergusonii Becca 0.76 EFB2_03326 UvrABC system protein B 0.82 EFB2_04533 UvrABC system protein A low > 86
Escherichia coli ECOR38 0.76 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.82 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.56 14
Dickeya dadantii 3937 0.76 DDA3937_RS08530 excinuclease ABC subunit B 0.81 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.73 1
Klebsiella michiganensis M5al 0.76 BWI76_RS08785 excinuclease ABC subunit B 0.82 BWI76_RS01950 excinuclease ABC subunit A 0.71 1
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2211 Excinuclease ABC subunit B 0.82 EX28DRAFT_4246 excinuclease ABC, A subunit 0.83 2
Enterobacter sp. TBS_079 0.76 MPMX20_01408 UvrABC system protein B 0.82 MPMX20_00276 UvrABC system protein A 0.76 1
Shewanella loihica PV-4 0.76 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.94 1
Dickeya dianthicola 67-19 0.75 HGI48_RS08695 excinuclease ABC subunit B 0.81 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Dickeya dianthicola ME23 0.75 DZA65_RS08990 excinuclease ABC subunit B 0.81 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Klebsiella pneumoniae MKP103 0.75 KDGMDA_17050 excinuclease ABC subunit UvrB 0.83 KDGMDA_10400 excinuclease ABC subunit UvrA 0.34 4
Erwinia amylovora T8 0.75 OLJFJH_16735 excinuclease ABC subunit UvrB 0.81 OLJFJH_03425 excinuclease ABC subunit UvrA 0.82 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF675 Excinuclease ABC subunit B 0.82 GFF1429 Excinuclease ABC subunit A 0.69 1
Alteromonas macleodii MIT1002 0.75 MIT1002_01261 Excinuclease ABC subunit B 0.81 MIT1002_00179 Excinuclease ABC subunit A low > 70
Shewanella amazonensis SB2B 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.84 1
Shewanella oneidensis MR-1 0.74 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.92 1
Shewanella sp. ANA-3 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.75 1
Pseudomonas sp. RS175 0.73 PFR28_02837 UvrABC system protein B 0.77 PFR28_03974 UvrABC system protein A 0.46 2
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_21335 excinuclease ABC subunit B 0.77 AO356_14785 ABC-ATPase UvrA 0.98 1
Pseudomonas aeruginosa PA14 0.72 IKLFDK_15985 excinuclease ABC subunit UvrB 0.77 IKLFDK_21795 excinuclease ABC subunit UvrA 0.84 1
Pseudomonas aeruginosa PUPa3 0.72 DQ20_RS34340 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.77 DQ20_RS43730 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.68 1
Pseudomonas aeruginosa MRSN321 0.72 DY961_RS01215 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.77 DY961_RS29405 uvrA;go_function=DNA excinuclease ABC subunit UvrA 0.41 10
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_52 Excinuclease ABC subunit B 0.77 Pf6N2E2_4888 Excinuclease ABC subunit A 0.93 1
Pseudomonas sp. DMC3 0.72 GFF774 UvrABC system protein B 0.77 GFF3792 UvrABC system protein A low > 89
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1974 Excinuclease ABC subunit B 0.77 Psyr_4520 Excinuclease ABC subunit A 0.89 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1974 Excinuclease ABC subunit B 0.77 Psyr_4520 Excinuclease ABC subunit A 0.95 1
Pseudomonas stutzeri RCH2 0.72 Psest_1296 excinuclease ABC, B subunit 0.76 Psest_3576 excinuclease ABC, A subunit 0.89 1
Pseudomonas orientalis W4I3 0.72 QF045_RS20805 excinuclease ABC subunit UvrB 0.77 QF045_RS27415 excinuclease ABC subunit UvrA low > 93
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_20545 excinuclease ABC subunit B 0.76 AO353_06855 ABC-ATPase UvrA 0.88 1
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_26 Excinuclease ABC subunit B 0.77 Pf1N1B4_2611 Excinuclease ABC subunit A 0.66 1
Pseudomonas fluorescens SBW25 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas putida KT2440 0.72 PP_1974 excinuclease UvrABC protein B 0.77 PP_0483 excinuclease (uvrABC system protein A) — —
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS20655 excinuclease ABC subunit B 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.63 1
Pseudomonas sp. SVBP6 0.72 COO64_RS05730 uvrB excinuclease ABC subunit UvrB 0.77 COO64_RS16075 uvrA excinuclease ABC subunit UvrA low > 93
Pseudomonas simiae WCS417 0.72 PS417_18685 excinuclease ABC subunit B 0.77 PS417_25395 excinuclease ABC subunit A 0.81 1
Pseudomonas sp. BP01 0.72 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB 0.77 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA low > 84
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_03964 UvrABC system protein B 0.77 GEMAOFIL_05194 UvrABC system protein A low > 96
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_3959 Excinuclease ABC subunit B 0.77 PfGW456L13_1283 Excinuclease ABC subunit A 0.62 1
Pseudomonas segetis P6 0.71 MPMX49_03091 UvrABC system protein B 0.76 MPMX49_00967 UvrABC system protein A low > 75
Pseudomonas sp. S08-1 0.70 OH686_04580 excinuclease ABC subunit B 0.77 OH686_15495 excinuclease ABC subunit A 0.87 5
Marinobacter adhaerens HP15 0.70 HP15_1372 excinuclease ABC subunit B 0.74 HP15_406 excinuclease ABC, ATPase subunit (A) 0.93 1
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.71 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.99 1
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.75 6
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.83 1
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS14235 excinuclease ABC subunit UvrB 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.72 1
Rhodanobacter denitrificans MT42 0.69 LRK55_RS13955 excinuclease ABC subunit UvrB 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.94 19
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS14375 excinuclease ABC subunit UvrB 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.64 3
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_2341 Excinuclease ABC subunit B 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.99 1
Acinetobacter baumannii LAC-4 0.67 RR41_RS04945 excinuclease ABC subunit UvrB 0.70 RR41_RS01040 excinuclease ABC subunit UvrA low > 55
Dechlorosoma suillum PS 0.66 Dsui_2434 excinuclease ABC, B subunit 0.71 Dsui_1622 excinuclease ABC, A subunit 0.90 1
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.72 5
Acinetobacter radioresistens SK82 0.66 MPMX26_02142 UvrABC system protein B 0.69 MPMX26_02892 UvrABC system protein A 0.87 1
Ralstonia solanacearum PSI07 0.66 RPSI07_RS19240 excinuclease ABC subunit UvrB 0.68 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS14225 excinuclease ABC subunit UvrB 0.68 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Ralstonia solanacearum UW163 0.66 UW163_RS11690 excinuclease ABC subunit UvrB 0.68 UW163_RS02345 excinuclease ABC subunit UvrA — —
Ralstonia solanacearum GMI1000 0.65 RS_RS05005 UvrABC system protein B 0.68 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS23870 excinuclease ABC subunit UvrB 0.67 QEN71_RS01825 excinuclease ABC subunit UvrA low > 153
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS05995 excinuclease ABC subunit B 0.66 RR42_RS02145 excinuclease ABC subunit A 0.91 1
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04973 Excinuclease ABC subunit B 0.68 H281DRAFT_01913 Excinuclease ABC subunit A low > 103
Paraburkholderia graminis OAS925 0.65 ABIE53_001645 excinuclease ABC subunit B 0.68 ABIE53_000732 excinuclease ABC subunit A low > 113
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS06905 excinuclease ABC subunit B 0.68 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.68 HSERO_RS19810 excinuclease ABC subunit A 0.89 1
Castellaniella sp019104865 MT123 0.64 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.68 36
Methylophilus sp. DMC18 0.63 GFF1123 UvrABC system protein B 0.69 GFF2008 UvrABC system protein A low > 43
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4114 Excinuclease ABC subunit B 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.46 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4962 Excinuclease ABC subunit B 0.63 GFF2755 Excinuclease ABC subunit A low > 90
Variovorax sp. OAS795 0.62 ABID97_RS13995 excinuclease ABC subunit UvrB 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA 0.83 3
Variovorax sp. SCN45 0.62 GFF945 Excinuclease ABC subunit B 0.65 GFF4944 Excinuclease ABC subunit A 0.80 98
Azospirillum brasilense Sp245 0.61 AZOBR_RS16420 excinuclease ABC subunit B 0.59 AZOBR_RS15370 excinuclease ABC subunit A 0.80 1
Azospirillum sp. SherDot2 0.60 MPMX19_01038 UvrABC system protein B 0.60 MPMX19_01152 UvrABC system protein A 0.80 1
Caulobacter crescentus NA1000 0.60 CCNA_03076 excinuclease ABC subunit B 0.60 CCNA_02673 excinuclease ABC subunit A 0.90 1
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_03076 excinuclease ABC subunit B 0.60 CCNA_02673 excinuclease ABC subunit A low > 67
Magnetospirillum magneticum AMB-1 0.59 AMB_RS19255 excinuclease ABC subunit UvrB 0.58 AMB_RS12410 excinuclease ABC subunit UvrA 0.81 34
Rhodospirillum rubrum S1H 0.58 Rru_A1133 Excinuclease ABC, B subunit (NCBI) 0.60 Rru_A1752 Excinuclease ABC, A subunit (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.58 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.91 3
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.58 Ga0059261_0674 excinuclease ABC, A subunit 0.96 1
Brevundimonas sp. GW460-12-10-14-LB2 0.58 A4249_RS00555 excinuclease ABC subunit UvrB 0.58 A4249_RS08575 excinuclease ABC subunit UvrA low > 48
Phaeobacter inhibens DSM 17395 0.57 PGA1_c26160 uvrABC system protein B 0.59 PGA1_c17370 uvrABC system protein A 0.91 1
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) 0.49 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.68 1
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.82 2
Sphingobium sp. HT1-2 0.56 GFF700 Excinuclease ABC subunit B 0.59 GFF1696 Excinuclease ABC subunit A low > 95
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.55 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.87 1
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.72 22
Pedobacter sp. GW460-11-11-14-LB5 0.55 CA265_RS19430 excinuclease ABC subunit B 0.48 CA265_RS25080 excinuclease ABC subunit A 0.94 3
Fusobacterium nucleatum SB010 0.55 HUW76_02625 excinuclease ABC subunit UvrB 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.97 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA low > 71
Mycobacterium tuberculosis H37Rv 0.54 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.56 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.64 1
Cellulophaga baltica 18 0.54 M666_RS19015 excinuclease ABC subunit UvrB 0.50 M666_RS15455 excinuclease ABC subunit UvrA 0.59 23
Synechocystis sp000284455 PCC 6803 0.54 SGL_RS14040 excinuclease ABC subunit UvrB 0.55 SGL_RS06380 excinuclease ABC subunit UvrA 0.87 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_1215 excinuclease ABC, B subunit 0.50 Echvi_1138 excinuclease ABC, A subunit 0.96 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_19110 excinuclease ABC subunit B 0.49 CA264_18100 ABC-ATPase UvrA 0.89 2
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.79 2
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.86 2
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB 0.48 ABI39_RS15330 excinuclease ABC subunit UvrA 0.82 2
Bacteroides ovatus ATCC 8483 0.52 BACOVA_03714 excinuclease ABC, B subunit 0.48 BACOVA_03703 excinuclease ABC, A subunit 0.92 1
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS15225 excinuclease ABC subunit UvrB 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA low > 56
Bifidobacterium breve UCC2003 0.51 BBR_RS14285 excinuclease ABC subunit UvrB 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.85 1
Methanococcus maripaludis JJ 0.51 MMJJ_RS01245 excinuclease ABC subunit UvrB 0.54 MMJJ_RS01235 excinuclease ABC subunit UvrA 0.50 21
Methanococcus maripaludis S2 0.50 MMP_RS03805 excinuclease ABC subunit UvrB 0.53 MMP_RS03815 excinuclease ABC subunit UvrA low > 25

Not shown: 1 genomes with orthologs for CSW01_05185 only; 6 genomes with orthologs for CSW01_02080 only