Conservation of cofitness between CSW01_03705 and CSW01_02080 in Vibrio cholerae E7946 ATCC 55056

117 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_02080 UvrABC system protein A 0.54 8
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) low > 62
Shewanella oneidensis MR-1 0.80 SO3577 clpB clpB protein (NCBI ptt file) 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.82 GFF1429 Excinuclease ABC subunit A low > 78
Alteromonas macleodii MIT1002 0.78 MIT1002_02677 Heat shock protein F84.1 0.81 MIT1002_00179 Excinuclease ABC subunit A low > 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.82 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.82 MPMX20_00276 UvrABC system protein A low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.81 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.82 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 88
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.82 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA low > 87
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.82 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.83 KDGMDA_10400 excinuclease ABC subunit UvrA low > 95
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.82 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA low > 79
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.82 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 76
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.82 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.82 OHPLBJKB_03983 UvrABC system protein A low > 74
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.82 BWI76_RS01950 excinuclease ABC subunit A low > 92
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.82 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC low > 61
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.82 b4058 uvrA excinuclease ABC subunit A (NCBI) low > 76
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.82 EFB2_04533 UvrABC system protein A 0.60 38
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.82 BNILDI_06380 uvrA excinuclease ABC subunit UvrA low > 75
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.82 MCAODC_03405 uvrA excinuclease ABC subunit UvrA low > 88
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.82 ECOLIN_RS23485 excinuclease ABC subunit UvrA
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.81 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.82 HER17_RS03550 excinuclease ABC subunit UvrA low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.81 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.82 IAI46_22905 excinuclease ABC subunit UvrA low > 86
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.81 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.81 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.82 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.81 OLJFJH_03425 excinuclease ABC subunit UvrA low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.81 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.81 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.74 HP15_406 excinuclease ABC, ATPase subunit (A) low > 73
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB 0.77 B158DRAFT_0885 excinuclease ABC, A subunit low > 40
Pseudomonas sp. SVBP6 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB 0.77 COO64_RS16075 uvrA excinuclease ABC subunit UvrA low > 93
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.77 PFR28_03974 UvrABC system protein A low > 88
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.77 Pf6N2E2_4888 Excinuclease ABC subunit A low > 103
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.77 AO356_14785 ABC-ATPase UvrA low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.77 Pf1N1B4_2611 Excinuclease ABC subunit A low > 87
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.77 OH686_15495 excinuclease ABC subunit A low > 80
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.77 GEMAOFIL_05194 UvrABC system protein A low > 93
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.77 PS417_25395 excinuclease ABC subunit A low > 88
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.77 IKLFDK_21795 excinuclease ABC subunit UvrA low > 100
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.77 PfGW456L13_1283 Excinuclease ABC subunit A low > 87
Pseudomonas stutzeri RCH2 0.71 Psest_0711 ATP-dependent chaperone ClpB 0.76 Psest_3576 excinuclease ABC, A subunit low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.77 Psyr_4520 Excinuclease ABC subunit A low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.77 Psyr_4520 Excinuclease ABC subunit A low > 86
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.76 AO353_06855 ABC-ATPase UvrA low > 101
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1382.1 ClpB protein 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A low > 74
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.77 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.77 GFF3792 UvrABC system protein A low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.77 PP_0483 excinuclease (uvrABC system protein A)
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB 0.71 ABZR86_RS00910 excinuclease ABC subunit UvrA low > 74
Pseudomonas segetis P6 0.70 MPMX49_03920 Chaperone protein ClpB 0.76 MPMX49_00967 UvrABC system protein A low > 75
Rhodanobacter denitrificans MT42 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA low > 63
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA low > 59
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA low > 53
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA low > 59
Methylophilus sp. DMC18 0.68 GFF1788 Chaperone protein ClpB 0.69 GFF2008 UvrABC system protein A low > 43
Dechlorosoma suillum PS 0.67 Dsui_2161 ATP-dependent chaperone ClpB 0.71 Dsui_1622 excinuclease ABC, A subunit low > 51
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB 0.68 H281DRAFT_01913 Excinuclease ABC subunit A low > 103
Paraburkholderia graminis OAS925 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB 0.68 ABIE53_000732 excinuclease ABC subunit A low > 113
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB 0.67 QEN71_RS01825 excinuclease ABC subunit UvrA low > 153
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS08990 protein disaggregation chaperone 0.68 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Ralstonia solanacearum PSI07 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB 0.68 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12455 protein disaggregation chaperone 0.66 RR42_RS02145 excinuclease ABC subunit A low > 128
Ralstonia solanacearum UW163 0.65 UW163_RS13360 ATP-dependent chaperone ClpB 0.68 UW163_RS02345 excinuclease ABC subunit UvrA
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB 0.68 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Ralstonia solanacearum GMI1000 0.65 RS_RS06695 chaperone protein ClpB 0.68 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Acidovorax sp. GW101-3H11 0.65 Ac3H11_1474 ClpB protein 0.64 Ac3H11_4387 Excinuclease ABC subunit A low > 79
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10545 protein disaggregation chaperone 0.68 HSERO_RS19810 excinuclease ABC subunit A low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3942 ClpB protein 0.63 GFF2755 Excinuclease ABC subunit A low > 90
Acinetobacter radioresistens SK82 0.64 MPMX26_01096 Chaperone protein ClpB 0.69 MPMX26_02892 UvrABC system protein A low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS10060 ATP-dependent chaperone ClpB 0.70 RR41_RS01040 excinuclease ABC subunit UvrA low > 55
Variovorax sp. SCN45 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) 0.65 GFF4944 Excinuclease ABC subunit A low > 127
Variovorax sp. OAS795 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA low > 91
Castellaniella sp019104865 MT123 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA low > 48
Azospirillum sp. SherDot2 0.58 MPMX19_02442 Chaperone protein ClpB 0.60 MPMX19_01152 UvrABC system protein A low > 112
Azospirillum brasilense Sp245 0.58 AZOBR_RS18950 ATPase AAA 0.59 AZOBR_RS15370 excinuclease ABC subunit A low > 97
Rhizobium sp. OAE497 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB 0.58 ABIE40_RS09360 excinuclease ABC subunit UvrA low > 107
Agrobacterium fabrum C58 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit 0.57 Atu1513 ABC excinuclease subunit A low > 89
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB 0.58 Ga0059261_0674 excinuclease ABC, A subunit low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS11010 ATP-dependent chaperone ClpB 0.58 A4249_RS08575 excinuclease ABC subunit UvrA low > 48
Bosea sp. OAE506 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB 0.58 ABIE41_RS15100 excinuclease ABC subunit UvrA low > 77
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00922 ClpB protein 0.60 CCNA_02673 excinuclease ABC subunit A low > 67
Caulobacter crescentus NA1000 0.56 CCNA_00922 ClpB protein 0.60 CCNA_02673 excinuclease ABC subunit A low > 66
Rhodospirillum rubrum S1H 0.56 Rru_A0753 Chaperone clpB (NCBI) 0.60 Rru_A1752 Excinuclease ABC, A subunit (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.56 TX73_023005 ATP-dependent chaperone ClpB 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.52 4
Sinorhizobium meliloti 1021 0.55 SMc02433 ATP-dependent protease 0.57 SMc01235 excinuclease ABC subunit A low > 103
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS11615 ATP-dependent chaperone ClpB 0.55 SGL_RS06380 excinuclease ABC subunit UvrA low > 52
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_1089 clpB ATPase 0.55 Synpcc7942_0848 uvrA excinuclease ABC subunit A low > 38
Dinoroseobacter shibae DFL-12 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.55 PGA1_c32440 chaperone protein ClpB 0.59 PGA1_c17370 uvrABC system protein A low > 62
Magnetospirillum magneticum AMB-1 0.55 AMB_RS07865 ATP-dependent chaperone ClpB 0.58 AMB_RS12410 excinuclease ABC subunit UvrA low > 64
Sphingobium sp. HT1-2 0.55 GFF1039 Chaperone protein ClpB (ATP-dependent unfoldase) 0.59 GFF1696 Excinuclease ABC subunit A 0.63 85
Xanthobacter sp. DMC5 0.54 GFF3670 Chaperone protein ClpB 0.60 GFF749 UvrABC system protein A
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1874 clpB ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) 0.49 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) low > 55
Mycobacterium tuberculosis H37Rv 0.53 Rv0384c Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) 0.56 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS11960 ATP-dependent chaperone ClpB 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA low > 71
Bacteroides ovatus ATCC 8483 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB 0.48 BACOVA_03703 excinuclease ABC, A subunit low > 96
Bacteroides thetaiotaomicron VPI-5482 0.52 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.25 44
Parabacteroides merdae CL09T00C40 0.52 HMPREF1078_RS00500 ATP-dependent chaperone ClpB 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA low > 61
Bifidobacterium breve UCC2003 0.52 BBR_RS19700 ATP-dependent chaperone ClpB 0.54 BBR_RS15510 excinuclease ABC subunit UvrA low > 34
Cellulophaga baltica 18 0.52 M666_RS14965 ATP-dependent chaperone ClpB 0.50 M666_RS15455 excinuclease ABC subunit UvrA 0.59 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_14135 ATP-dependent chaperone ClpB 0.49 CA264_18100 ABC-ATPase UvrA low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS12775 ATP-dependent chaperone ClpB 0.48 CA265_RS25080 excinuclease ABC subunit A low > 88
Fusobacterium nucleatum SB010 0.51 HUW76_09935 ATP-dependent chaperone ClpB 0.54 HUW76_06660 excinuclease ABC subunit UvrA low > 35
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS18885 ATP-dependent chaperone ClpB 0.48 ABI39_RS15330 excinuclease ABC subunit UvrA low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS04980 ATP-dependent chaperone ClpB 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_0754 ATP-dependent chaperone ClpB 0.50 Echvi_1138 excinuclease ABC, A subunit low > 79

Not shown: 1 genomes with orthologs for CSW01_03705 only; 2 genomes with orthologs for CSW01_02080 only