Conservation of cofitness between SO3462 and SO4030 in Shewanella oneidensis MR-1

114 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO3462 recN DNA repair protein RecN (NCBI ptt file) 1.0 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.44 11
Shewanella sp. ANA-3 0.97 Shewana3_1104 recombination and repair protein (RefSeq) 0.99 Shewana3_3592 excinuclease ABC subunit A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.81 Sama_1026 recombination and repair protein (RefSeq) 0.90 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.66 9
Shewanella loihica PV-4 0.77 Shew_1196 recombination and repair protein (RefSeq) 0.89 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.68 2
Rahnella sp. WP5 0.55 EX31_RS21760 DNA repair protein RecN 0.79 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_04395 DNA repair protein RecN 0.80 CSW01_02080 UvrABC system protein A low > 62
Escherichia coli BL21 0.55 ECD_02504 recombination and repair protein 0.80 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4162 DNA repair protein RecN 0.80 GFF1429 Excinuclease ABC subunit A 0.62 9
Escherichia fergusonii Becca 0.55 EFB2_01277 DNA repair protein RecN 0.80 EFB2_04533 UvrABC system protein A low > 86
Escherichia coli ECRC102 0.55 NIAGMN_18915 recN DNA repair protein RecN 0.80 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA low > 80
Escherichia coli ECRC100 0.55 OKFHMN_21145 recN DNA repair protein RecN 0.80 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA low > 79
Escherichia coli ECOR38 0.55 HEPCGN_20265 recN DNA repair protein RecN 0.80 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 88
Escherichia coli ECRC99 0.55 KEDOAH_07075 recN DNA repair protein RecN 0.80 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01091 DNA repair protein RecN 0.80 OHPLBJKB_03983 UvrABC system protein A low > 74
Escherichia coli ECOR27 0.55 NOLOHH_12815 recN DNA repair protein RecN 0.80 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 76
Escherichia coli ECRC62 0.55 BNILDI_11620 recN DNA repair protein RecN 0.80 BNILDI_06380 uvrA excinuclease ABC subunit UvrA low > 75
Escherichia coli BW25113 0.55 b2616 recN recombination and repair protein (NCBI) 0.80 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.39 21
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14775 DNA repair protein RecN 0.80 ECOLIN_RS23485 excinuclease ABC subunit UvrA low > 55
Escherichia coli ECRC101 0.55 MCAODC_11670 recN DNA repair protein RecN 0.80 MCAODC_03405 uvrA excinuclease ABC subunit UvrA low > 88
Escherichia coli ECRC98 0.55 JDDGAC_24810 recN DNA repair protein RecN 0.80 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA low > 87
Erwinia amylovora T8 0.55 OLJFJH_10175 DNA repair protein RecN 0.80 OLJFJH_03425 excinuclease ABC subunit UvrA low > 58
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS14700 DNA repair protein RecN 0.80 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA low > 74
Pantoea sp. MT58 0.54 IAI47_04810 DNA repair protein RecN 0.80 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Klebsiella pneumoniae MKP103 0.54 KDGMDA_02250 DNA repair protein RecN 0.80 KDGMDA_10400 excinuclease ABC subunit UvrA low > 95
Dickeya dadantii 3937 0.54 DDA3937_RS04325 DNA repair protein RecN 0.80 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2719 DNA repair protein RecN 0.79 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Serratia liquefaciens MT49 0.54 IAI46_19635 DNA repair protein RecN 0.80 IAI46_22905 excinuclease ABC subunit UvrA low > 86
Klebsiella michiganensis M5al 0.54 BWI76_RS21560 DNA repair protein RecN 0.79 BWI76_RS01950 excinuclease ABC subunit A low > 92
Enterobacter sp. TBS_079 0.53 MPMX20_03486 DNA repair protein RecN 0.79 MPMX20_00276 UvrABC system protein A low > 85
Dickeya dianthicola 67-19 0.53 HGI48_RS04320 DNA repair protein RecN 0.79 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS04235 DNA repair protein RecN 0.79 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Pectobacterium carotovorum WPP14 0.52 HER17_RS17420 DNA repair protein RecN 0.79 HER17_RS03550 excinuclease ABC subunit UvrA low > 75
Erwinia tracheiphila SCR3 0.52 LU632_RS16985 recN DNA repair protein RecN 0.79 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Erwinia tracheiphila HP pepo 2.2 0.52 IJEDHG_26925 recN DNA repair protein RecN 0.79 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA low > 61
Alteromonas macleodii MIT1002 0.45 MIT1002_01443 Recombination protein N 0.78 MIT1002_00179 Excinuclease ABC subunit A low > 70
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_5106 DNA repair protein RecN 0.75 PfGW456L13_1283 Excinuclease ABC subunit A 0.32 44
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3370 DNA repair protein RecN 0.75 Pf6N2E2_4888 Excinuclease ABC subunit A 0.73 2
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1178 DNA repair protein RecN 0.75 Pf1N1B4_2611 Excinuclease ABC subunit A 0.56 1
Marinobacter adhaerens HP15 0.42 HP15_3084 DNA repair protein RecN 0.72 HP15_406 excinuclease ABC, ATPase subunit (A) 0.92 1
Pseudomonas sp. S08-1 0.42 OH686_17050 DNA repair protein RecN 0.75 OH686_15495 excinuclease ABC subunit A low > 80
Pseudomonas sp. DMC3 0.42 GFF4971 DNA repair protein RecN 0.75 GFF3792 UvrABC system protein A low > 89
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29775 DNA repair protein RecN 0.75 IKLFDK_21795 excinuclease ABC subunit UvrA low > 100
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4197 DNA replication and repair protein RecN 0.75 Psyr_4520 Excinuclease ABC subunit A 0.50 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4197 DNA replication and repair protein RecN 0.75 Psyr_4520 Excinuclease ABC subunit A 0.46 17
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05660 DNA repair protein RecN 0.75 AO353_06855 ABC-ATPase UvrA 0.67 3
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07510 DNA repair protein RecN 0.75 AO356_14785 ABC-ATPase UvrA 0.78 5
Pseudomonas sp. RS175 0.41 PFR28_00071 DNA repair protein RecN 0.75 PFR28_03974 UvrABC system protein A low > 88
Pseudomonas sp. SVBP6 0.41 COO64_RS15270 recN DNA repair protein RecN 0.75 COO64_RS16075 uvrA excinuclease ABC subunit UvrA low > 93
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04964 DNA repair protein RecN 0.75 GEMAOFIL_05194 UvrABC system protein A 0.57 45
Pseudomonas simiae WCS417 0.41 PS417_24070 recombination and repair protein 0.75 PS417_25395 excinuclease ABC subunit A 0.66 1
Pseudomonas fluorescens SBW25 0.40 PFLU_RS25910 DNA repair protein RecN 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS25910 DNA repair protein RecN 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_0962 DNA repair protein RecN 0.74 Psest_3576 excinuclease ABC, A subunit 0.74 3
Pseudomonas putida KT2440 0.39 PP_4729 factor used in recombination and DNA repair 0.75 PP_0483 excinuclease (uvrABC system protein A)
Pseudomonas sp. BP01 0.39 JOY50_RS26735 recN DNA repair protein RecN 0.75 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA low > 84
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0601 DNA replication and repair protein RecN 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.60 15
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS03060 DNA repair protein 0.67 HSERO_RS19810 excinuclease ABC subunit A low > 78
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.69 Dsui_1622 excinuclease ABC, A subunit 0.88 5
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.66 QEN71_RS01825 excinuclease ABC subunit UvrA low > 153
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05665 DNA repair protein RecN 0.69 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.80 7
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3431.1 DNA repair protein RecN 0.70 Xcc-8004.3830.1 Excinuclease ABC subunit A low > 74
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11400 DNA repair protein RecN 0.69 LRK53_RS13420 excinuclease ABC subunit UvrA low > 59
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01065 DNA repair protein RecN 0.66 ABZR87_RS07120 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS13275 DNA repair protein RecN 0.66 RS_RS02080 excinuclease ABC subunit UvrA low > 80
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05415 DNA repair protein RecN 0.66 RALBFv3_RS11235 excinuclease ABC subunit UvrA low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS08210 DNA repair protein RecN 0.66 UW163_RS02345 excinuclease ABC subunit UvrA
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07340 recN DNA repair protein RecN 0.69 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA low > 52
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11890 DNA repair protein RecN 0.66 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Methylophilus sp. DMC18 0.33 GFF306 DNA repair protein RecN 0.69 GFF2008 UvrABC system protein A low > 43
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.69 LRK54_RS15210 excinuclease ABC subunit UvrA 0.46 46
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.69 LRK55_RS14925 excinuclease ABC subunit UvrA low > 63
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3460 DNA repair protein RecN 0.63 Ac3H11_4387 Excinuclease ABC subunit A low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.63 GFF4944 Excinuclease ABC subunit A low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.64 GFF2755 Excinuclease ABC subunit A low > 90
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS05910 DNA repair protein 0.65 RR42_RS02145 excinuclease ABC subunit A 0.69 3
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04692 DNA replication and repair protein RecN 0.65 H281DRAFT_01913 Excinuclease ABC subunit A low > 103
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.66 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Paraburkholderia graminis OAS925 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.66 ABIE53_000732 excinuclease ABC subunit A 0.30 22
Castellaniella sp019104865 MT123 0.30 ABCV34_RS07470 DNA repair protein RecN 0.59 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.29 45
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS02000 DNA repair protein RecN 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA low > 61
Acinetobacter baumannii LAC-4 0.28 RR41_RS17380 DNA repair protein RecN 0.67 RR41_RS01040 excinuclease ABC subunit UvrA low > 55
Acinetobacter radioresistens SK82 0.28 MPMX26_00239 DNA repair protein RecN 0.66 MPMX26_02892 UvrABC system protein A 0.45 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS06580 DNA repair protein RecN 0.46 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.53 7
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.56 SMc01235 excinuclease ABC subunit A 0.66 6
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.50 Echvi_1138 excinuclease ABC, A subunit 0.56 21
Bosea sp. OAE506 0.27 ABIE41_RS12645 DNA repair protein RecN 0.57 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.61 20
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10900 DNA repair protein RecN 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA low > 56
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.56 Atu1513 ABC excinuclease subunit A 0.36 14
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.47 ABI39_RS15330 excinuclease ABC subunit UvrA low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS18225 DNA repair protein RecN 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.59 21
Sphingobium sp. HT1-2 0.25 GFF2340 DNA repair protein RecN 0.58 GFF1696 Excinuclease ABC subunit A low > 95
Azospirillum sp. SherDot2 0.25 MPMX19_01601 DNA repair protein RecN 0.58 MPMX19_01152 UvrABC system protein A 0.62 7
Magnetospirillum magneticum AMB-1 0.25 AMB_RS19520 DNA repair protein RecN 0.57 AMB_RS12410 excinuclease ABC subunit UvrA
Azospirillum brasilense Sp245 0.25 AZOBR_RS12395 DNA repair protein RecN 0.56 AZOBR_RS15370 excinuclease ABC subunit A
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.57 Ga0059261_0674 excinuclease ABC, A subunit 0.35 13
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS14855 DNA repair protein RecN 0.48 CA265_RS25080 excinuclease ABC subunit A 0.80 6
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.48 BACOVA_03703 excinuclease ABC, A subunit low > 96
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.57 PGA1_c17370 uvrABC system protein A 0.47 7
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.52 HUW76_06660 excinuclease ABC subunit UvrA low > 35
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.59 Rru_A1752 Excinuclease ABC, A subunit (NCBI)
Xanthobacter sp. DMC5 0.23 GFF2252 DNA repair protein RecN 0.59 GFF749 UvrABC system protein A
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_13235 DNA repair protein RecN 0.49 CA264_18100 ABC-ATPase UvrA low > 74
Rhodopseudomonas palustris CGA009 0.23 TX73_018240 DNA repair protein RecN 0.59 TX73_014580 excinuclease ABC subunit UvrA low > 86
Cellulophaga baltica 18 0.23 M666_RS17655 DNA repair protein RecN 0.48 M666_RS15455 excinuclease ABC subunit UvrA 0.46 62
Dinoroseobacter shibae DFL-12 0.23 Dshi_2413 DNA repair protein RecN (RefSeq) 0.59 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.46 8
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.57 A4249_RS08575 excinuclease ABC subunit UvrA low > 48
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.57 CCNA_02673 excinuclease ABC subunit A low > 67
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.57 CCNA_02673 excinuclease ABC subunit A 0.83 7
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1779 recN DNA repair protein RecN 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.61 27
Synechocystis sp000284455 PCC 6803 0.19 SGL_RS11690 DNA repair protein RecN 0.54 SGL_RS06380 excinuclease ABC subunit UvrA low > 52
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.54 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU2463 recN DNA repair protein RecN (TIGR) 0.45 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) low > 55
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.53 BBR_RS15510 excinuclease ABC subunit UvrA low > 34
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0923 SMC domain protein (RefSeq) 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) low > 51

Not shown: 1 genomes with orthologs for SO3462 only; 4 genomes with orthologs for SO4030 only