Conservation of cofitness between SO4408 and SO1185 in Shewanella oneidensis MR-1

116 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4408 bipA virulence regulator BipA (NCBI ptt file) 1.0 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.41 1
Shewanella sp. ANA-3 0.98 Shewana3_0301 GTP-binding protein TypA (RefSeq) 0.98 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.36 9
Shewanella amazonensis SB2B 0.93 Sama_3415 virulence regulator BipA (RefSeq) 0.91 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.69 2
Shewanella loihica PV-4 0.92 Shew_3553 GTP-binding protein TypA (RefSeq) 0.90 Shew_2919 translation-associated GTPase (RefSeq) 0.58 3
Kangiella aquimarina DSM 16071 0.84 B158DRAFT_0725 GTP-binding protein TypA/BipA 0.75 B158DRAFT_2052 GTP-binding protein YchF low > 40
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_13840 translational GTPase TypA 0.79 CSW01_10875 redox-regulated ATPase YchF low > 62
Alteromonas macleodii MIT1002 0.82 MIT1002_03181 hypothetical protein 0.79 MIT1002_01504 Ribosome-binding ATPase YchF low > 70
Dickeya dadantii 3937 0.80 DDA3937_RS00140 ribosome-dependent GTPase TypA 0.81 DDA3937_RS11035 redox-regulated ATPase YchF 0.59 34
Dickeya dianthicola ME23 0.80 DZA65_RS22195 ribosome-dependent GTPase TypA 0.81 DZA65_RS11435 redox-regulated ATPase YchF low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS21220 ribosome-dependent GTPase TypA 0.81 HGI48_RS10975 redox-regulated ATPase YchF low > 71
Klebsiella pneumoniae MKP103 0.79 KDGMDA_09020 ribosome-dependent GTPase TypA 0.83 KDGMDA_24705 redox-regulated ATPase YchF low > 95
Escherichia coli BW25113 0.79 b3871 bipA GTP-binding protein (NCBI) 0.82 b1203 ychF translation-associated GTPase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_04181 GTP-binding protein TypA/BipA 0.82 OHPLBJKB_02484 Ribosome-binding ATPase YchF low > 74
Escherichia fergusonii Becca 0.79 EFB2_04745 GTP-binding protein TypA/BipA 0.82 EFB2_02724 Ribosome-binding ATPase YchF low > 86
Escherichia coli Nissle 1917 0.79 ECOLIN_RS22315 ribosome-dependent GTPase TypA 0.82 ECOLIN_RS07280 redox-regulated ATPase YchF low > 55
Escherichia coli BL21 0.79 ECD_03756 GTP-binding protein 0.82 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated — —
Klebsiella michiganensis M5al 0.79 BWI76_RS00410 translational GTPase TypA 0.78 BWI76_RS17485 GTP-binding protein YchF — —
Escherichia coli ECRC101 0.79 MCAODC_04590 typA ribosome-dependent GTPase TypA 0.82 MCAODC_21850 ychF redox-regulated ATPase YchF low > 88
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4353 GTP-binding protein TypA/BipA 0.78 EX28DRAFT_0821 GTP-binding protein YchF — —
Escherichia coli ECRC100 0.79 OKFHMN_14090 typA ribosome-dependent GTPase TypA 0.82 OKFHMN_28410 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC98 0.79 JDDGAC_17715 typA ribosome-dependent GTPase TypA 0.82 JDDGAC_06165 ychF redox-regulated ATPase YchF low > 87
Escherichia coli ECOR27 0.79 NOLOHH_06220 typA ribosome-dependent GTPase TypA 0.82 NOLOHH_20650 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC62 0.79 BNILDI_05310 typA ribosome-dependent GTPase TypA 0.82 BNILDI_18805 ychF redox-regulated ATPase YchF low > 75
Escherichia coli ECRC102 0.79 NIAGMN_11845 typA ribosome-dependent GTPase TypA 0.82 NIAGMN_27825 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC99 0.79 KEDOAH_14060 typA ribosome-dependent GTPase TypA 0.82 KEDOAH_25405 ychF redox-regulated ATPase YchF — —
Escherichia coli ECOR38 0.79 HEPCGN_12720 typA ribosome-dependent GTPase TypA 0.82 HEPCGN_24875 ychF redox-regulated ATPase YchF low > 88
Enterobacter sp. TBS_079 0.79 MPMX20_04594 GTP-binding protein TypA/BipA 0.78 MPMX20_02645 Ribosome-binding ATPase YchF — —
Serratia liquefaciens MT49 0.78 IAI46_24945 ribosome-dependent GTPase TypA 0.79 IAI46_10240 redox-regulated ATPase YchF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF2223 GTP-binding protein TypA/BipA 0.82 GFF2784 GTP-binding and nucleic acid-binding protein YchF low > 78
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13505_RS18880 ribosome-dependent GTPase TypA 0.81 PagCFBP13505_RS17295 redox-regulated ATPase YchF low > 74
Pantoea sp. MT58 0.78 IAI47_00465 ribosome-dependent GTPase TypA 0.81 IAI47_11310 redox-regulated ATPase YchF low > 76
Pectobacterium carotovorum WPP14 0.78 HER17_RS21425 ribosome-dependent GTPase TypA 0.81 HER17_RS10445 redox-regulated ATPase YchF low > 75
Erwinia amylovora T8 0.78 OLJFJH_05510 ribosome-dependent GTPase TypA 0.80 OLJFJH_14950 redox-regulated ATPase YchF low > 58
Rahnella sp. WP5 0.78 EX31_RS15865 ribosome-dependent GTPase TypA 0.79 EX31_RS07380 redox-regulated ATPase YchF low > 89
Erwinia tracheiphila SCR3 0.77 LU632_RS22150 typA ribosome-dependent GTPase TypA 0.81 LU632_RS13950 ychF redox-regulated ATPase YchF low > 74
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_08300 typA ribosome-dependent GTPase TypA 0.81 IJEDHG_21765 ychF redox-regulated ATPase YchF — —
Acinetobacter radioresistens SK82 0.73 MPMX26_02489 GTP-binding protein TypA/BipA 0.77 MPMX26_01861 Ribosome-binding ATPase YchF low > 36
Acinetobacter baumannii LAC-4 0.72 RR41_RS03305 translational GTPase TypA 0.76 RR41_RS11610 redox-regulated ATPase YchF — —
Marinobacter adhaerens HP15 0.71 HP15_429 GTP-binding protein TypA 0.77 HP15_704 translation-associated GTPase 0.51 4
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.4106.1 GTP-binding protein TypA/BipA 0.70 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas segetis P6 0.71 MPMX49_04281 GTP-binding protein TypA/BipA 0.72 MPMX49_01326 Ribosome-binding ATPase YchF — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS20640 translational GTPase TypA 0.72 ABZR86_RS22010 redox-regulated ATPase YchF 0.67 2
Lysobacter sp. OAE881 0.71 ABIE51_RS05990 translational GTPase TypA 0.72 ABIE51_RS05745 redox-regulated ATPase YchF 0.44 20
Rhodanobacter denitrificans MT42 0.71 LRK55_RS00550 translational GTPase TypA 0.69 LRK55_RS03425 redox-regulated ATPase YchF low > 63
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS00775 translational GTPase TypA 0.69 LRK54_RS03675 redox-regulated ATPase YchF 0.66 6
Pseudomonas aeruginosa PA14 0.71 IKLFDK_27935 translational GTPase TypA 0.74 IKLFDK_00125 Ribosome-binding ATPase YchF 0.54 51
Rhodanobacter sp. FW510-T8 0.70 OKGIIK_06470 typA translational GTPase TypA 0.70 OKGIIK_10565 Ribosome-binding ATPase YchF low > 53
Pseudomonas stutzeri RCH2 0.70 Psest_3926 GTP-binding protein TypA/BipA 0.74 Psest_1103 GTP-binding protein YchF 0.28 12
Rhodanobacter sp000427505 FW510-R12 0.70 LRK53_RS09360 translational GTPase TypA 0.70 LRK53_RS06260 redox-regulated ATPase YchF — —
Pseudomonas sp. S08-1 0.69 OH686_10610 GTP-binding protein TypA/BipA 0.74 OH686_07965 GTP-binding and nucleic acid-binding protein YchF low > 80
Pseudomonas putida KT2440 0.69 PP_5044 ribosome associated GTPase 0.74 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase — —
Pseudomonas lactucae CFBP13502 0.68 GEMAOFIL_00555 GTP-binding protein TypA/BipA 0.73 GEMAOFIL_00918 Ribosome-binding ATPase YchF low > 93
Pseudomonas sp. RS175 0.68 PFR28_04951 GTP-binding protein TypA/BipA 0.74 PFR28_03664 Ribosome-binding ATPase YchF — —
Pseudomonas sp. SVBP6 0.68 COO64_RS13355 typA translational GTPase TypA 0.74 COO64_RS03185 ychF redox-regulated ATPase YchF — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_09695 GTP-binding protein TypA 0.74 AO356_16450 GTP-binding protein — —
Pseudomonas fluorescens SBW25 0.68 PFLU_RS01720 translational GTPase TypA 0.71 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS01720 translational GTPase TypA 0.71 PFLU_RS03610 redox-regulated ATPase YchF — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA 0.73 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA 0.73 Psyr_0941 Conserved hypothetical protein 92 — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_340 GTP-binding protein TypA/BipA 0.74 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas sp. DMC3 0.68 GFF4075 GTP-binding protein TypA/BipA 0.75 GFF4499 Ribosome-binding ATPase YchF — —
Pseudomonas sp. BP01 0.68 JOY50_RS09470 typA translational GTPase TypA 0.73 JOY50_RS24895 ychF redox-regulated ATPase YchF low > 84
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_12180 GTP-binding protein TypA 0.72 AO353_14740 GTP-binding protein — —
Pseudomonas simiae WCS417 0.68 PS417_01665 GTP-binding protein TypA 0.73 PS417_03560 GTP-binding protein — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11245 translational GTPase TypA 0.72 ABZR87_RS02220 redox-regulated ATPase YchF low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS23065 translational GTPase TypA 0.71 QEN71_RS27600 redox-regulated ATPase YchF — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_05111 GTP-binding protein 0.73 H281DRAFT_05705 hypothetical protein — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12810 GTP-binding protein 0.74 RR42_RS18365 GTP-binding protein — —
Paraburkholderia graminis OAS925 0.65 ABIE53_002454 GTP-binding protein 0.72 ABIE53_003650 GTP-binding protein YchF — —
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS08105 GTP-binding protein 0.72 BPHYT_RS17445 GTP-binding protein YchF — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS15715 translational GTPase TypA 0.71 RALBFv3_RS06570 redox-regulated ATPase YchF — —
Ralstonia solanacearum PSI07 0.64 RPSI07_RS17640 translational GTPase TypA 0.71 RPSI07_RS10660 redox-regulated ATPase YchF low > 81
Ralstonia solanacearum GMI1000 0.64 RS_RS06495 translational GTPase TypA 0.72 RS_RS14520 redox-regulated ATPase YchF — —
Ralstonia solanacearum UW163 0.64 UW163_RS13160 translational GTPase TypA 0.71 UW163_RS07055 redox-regulated ATPase YchF — —
Dechlorosoma suillum PS 0.64 Dsui_2423 GTP-binding protein TypA/BipA 0.69 Dsui_1039 GTP-binding protein YchF — —
Methylophilus sp. DMC18 0.64 GFF1282 GTP-binding protein TypA/BipA 0.71 GFF1904 Ribosome-binding ATPase YchF low > 43
Castellaniella sp019104865 MT123 0.62 ABCV34_RS02140 translational GTPase TypA 0.70 ABCV34_RS09215 redox-regulated ATPase YchF — —
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS17980 GTP-binding protein 0.69 HSERO_RS20405 GTP-binding protein YchF low > 78
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2864 GTP-binding protein TypA/BipA 0.66 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF — —
Variovorax sp. OAS795 0.59 ABID97_RS16470 translational GTPase TypA 0.68 ABID97_RS24750 redox-regulated ATPase YchF low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4346 GTP-binding protein TypA/BipA 0.69 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.72 21
Variovorax sp. SCN45 0.58 GFF219 GTP-binding protein TypA/BipA 0.68 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.66 115
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_0817 GTP-binding protein TypA/BipA 0.56 Ga0059261_3227 GTP-binding protein YchF 0.39 29
Fusobacterium nucleatum SB010 0.54 HUW76_06170 translational GTPase TypA 0.59 HUW76_08540 redox-regulated ATPase YchF low > 35
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1601 GTP-binding protein TypA/BipA 0.73 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF — —
Agrobacterium fabrum C58 0.54 Atu2663 GTP-binding tyrosin phosphorylated protein 0.60 Atu2233 GTP-binding protein — —
Rhizobium sp. OAE497 0.54 ABIE40_RS18125 translational GTPase TypA 0.60 ABIE40_RS13100 redox-regulated ATPase YchF — —
Sinorhizobium meliloti 1021 0.53 SMc03242 GTP-binding protein 0.60 SMc02695 GTP-dependent nucleic acid-binding protein EngD low > 103
Azospirillum brasilense Sp245 0.53 AZOBR_RS09920 GTP-binding protein TypA 0.59 AZOBR_RS30645 GTP-binding protein YchF — —
Azospirillum sp. SherDot2 0.53 MPMX19_01378 GTP-binding protein TypA/BipA 0.58 MPMX19_01641 Ribosome-binding ATPase YchF — —
Sphingobium sp. HT1-2 0.53 GFF515 GTP-binding protein TypA/BipA 0.54 GFF48 GTP-binding and nucleic acid-binding protein YchF — —
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_1525 typA GTP-binding protein TypA 0.57 Synpcc7942_0554 ychF translation-associated GTPase low > 38
Xanthobacter sp. DMC5 0.53 GFF4181 GTP-binding protein TypA/BipA 0.54 GFF1678 Ribosome-binding ATPase YchF — —
Rhodopseudomonas palustris CGA009 0.52 TX73_002120 translational GTPase TypA 0.59 TX73_022570 redox-regulated ATPase YchF 0.38 14
Phaeobacter inhibens DSM 17395 0.52 PGA1_c15300 GTP-binding protein TypA 0.58 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.33 10
Bosea sp. OAE506 0.52 ABIE41_RS04255 translational GTPase TypA 0.57 ABIE41_RS11295 redox-regulated ATPase YchF — —
Synechocystis sp000284455 PCC 6803 0.52 SGL_RS02825 translational GTPase TypA 0.57 SGL_RS08975 redox-regulated ATPase YchF 0.90 3
Dinoroseobacter shibae DFL-12 0.51 Dshi_0019 GTP-binding protein TypA (RefSeq) 0.58 Dshi_0954 GTP-binding protein YchF (RefSeq) — —
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS01180 translational GTPase TypA 0.53 HMPREF1181_RS02000 redox-regulated ATPase YchF low > 56
Bacteroides thetaiotaomicron VPI-5482 0.51 BT2787 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) 0.59 BT3116 GTP-binding protein (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.51 BACOVA_01078 GTP-binding protein TypA 0.60 BACOVA_02821 GTP-binding protein YchF low > 96
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS13585 translational GTPase TypA 0.58 A4249_RS09035 redox-regulated ATPase YchF — —
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS06695 translational GTPase TypA 0.57 ABI39_RS05450 redox-regulated ATPase YchF low > 72
Rhodospirillum rubrum S1H 0.50 Rru_A0148 GTP-binding protein TypA (NCBI) 0.57 Rru_A3748 hypothetical protein (NCBI) low > 58
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS17580 translational GTPase TypA 0.60 HMPREF1078_RS06345 redox-regulated ATPase YchF low > 61
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS10055 translational GTPase TypA 0.57 HMPREF1058_RS11490 redox-regulated ATPase YchF low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS00415 translational GTPase TypA 0.60 ABZR88_RS14155 redox-regulated ATPase YchF — —
Caulobacter crescentus NA1000 0.50 CCNA_00778 GTP-binding protein TypA/BipA 0.56 CCNA_00512 GTP-binding protein, probable translation factor 0.53 44
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00778 GTP-binding protein TypA/BipA 0.56 CCNA_00512 GTP-binding protein, probable translation factor low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_00540 translational GTPase TypA 0.61 CA264_07495 GTP-binding protein YchF 0.49 19
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS23750 translational GTPase TypA 0.60 CA265_RS13275 redox-regulated ATPase YchF 0.57 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_4063 GTP-binding protein TypA/BipA 0.62 Echvi_2525 GTP-binding protein YchF — —
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU2231 typA GTP-binding protein TypA (TIGR) 0.55 DVU1429 GTP-binding protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.48 DvMF_0822 GTP-binding protein TypA (RefSeq) 0.51 DvMF_0234 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 51
Cellulophaga baltica 18 0.48 M666_RS00520 translational GTPase TypA 0.60 M666_RS17330 redox-regulated ATPase YchF low > 67
Mycobacterium tuberculosis H37Rv 0.43 Rv1165 Possible GTP-binding translation elongation factor TypA (tyrosine phosphorylated protein A) (GTP-binding protein) 0.44 Rv1112 Probable GTP binding protein low > 58
Bifidobacterium breve UCC2003 0.42 BBR_RS16690 translational GTPase TypA 0.47 BBR_RS14650 redox-regulated ATPase YchF — —

Not shown: 1 genomes with orthologs for SO4408 only; 1 genomes with orthologs for SO1185 only