Homologs of MMP_RS02335 from Methanococcus maripaludis S2

DNA-directed RNA polymerase
SEED: DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)
KEGG: DNA-directed RNA polymerase subunit E'

200 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Methanococcus maripaludis S2 MMP_RS02335 DNA-directed RNA polymerase no data 100 100
o Methanococcus maripaludis JJ MMJJ_RS02940 DNA-directed RNA polymerase no data 99 100
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 48 34
  Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 46 34
  Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 44 41
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 42 35
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 40 37
  Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 37 49
  Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 44 37
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 40 37
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 40 37
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 40 37
  Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 38 37
  Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 42 39
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11220 ribonuclease R cofit 42 39
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 39 37
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 38 37
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 42 34
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 36 48
  Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 35 51
  Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 39 39
  Klebsiella pneumoniae MRSN742743 KFA93_RS21025 rnr;go_function=RNA ribonuclease R strong 39 39
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 41 39
  Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 41 39
  Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 39 39
  Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 39 39
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 36 48
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 39 39
  Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 39 39
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R insig. 39 39
  Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 39 39
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 39 39
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 39 39
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 39 39
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 36 48
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 36 48
  Variovorax sp. SCN45 GFF7962 3'-to-5' exoribonuclease RNase R no data 36 37
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 40 41
  Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 40 41
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 37 48
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 35 37
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 30 48
  Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 37 39
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 34 49
  Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 38 39
  Erwinia amylovora T8 OLJFJH_04170 RNA-binding transcriptional accessory protein cofit 39 44
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 30 43
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_11945 RNA-binding transcriptional accessory protein no data 38 44
  Erwinia tracheiphila SCR3 LU632_RS22955 RNA-binding transcriptional accessory protein insig. 38 44
  Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 36 39
  Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 36 39
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 36 39
  Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 36 39
  Pectobacterium carotovorum WPP14 HER17_RS01615 RNA-binding transcriptional accessory protein cofit 38 44
  Vibrio cholerae E7946 ATCC 55056 CSW01_13705 RNA-binding transcriptional accessory protein insig. 36 52
  Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 36 39
  Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 35 39
  Rhodospirillum rubrum S1H Rru_A3785 3' exoribonuclease (NCBI) no data 37 48
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 36 39
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 36 39
  Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 35 39
  Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 35 39
  Pseudomonas segetis P6 ACVTMO_RS20555 rnr ribonuclease R strong 32 47
  Dickeya dianthicola 67-19 HGI48_RS19770 RNA-binding transcriptional accessory protein insig. 37 44
  Dickeya dianthicola ME23 DZA65_RS20860 RNA-binding transcriptional accessory protein insig. 37 44
  Enterobacter asburiae PDN3 EX28DRAFT_4136 Transcriptional accessory protein insig. 38 44
  Enterobacter sp. TBS_079 MPMX20_04294 Protein YhgF insig. 38 44
  Dickeya dadantii 3937 DDA3937_RS19635 RNA-binding transcriptional accessory protein sig. 37 44
  Pantoea sp. MT58 IAI47_01805 RNA-binding transcriptional accessory protein insig. 37 44
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18325 RNA-binding transcriptional accessory protein cofit 37 44
  Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 35 39
  Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 35 39
  Magnetospirillum magneticum AMB-1 AMB_RS20820 polyribonucleotide nucleotidyltransferase no data 34 48
  Rhodopseudomonas palustris CGA009 TX73_002245 polyribonucleotide nucleotidyltransferase no data 35 44
  Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 35 39
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 35 39
  Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 35 39
  Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 35 39
  Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 35 39
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 35 39
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 33 39
  Shewanella loihica PV-4 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) sig. 39 44
  Serratia liquefaciens MT49 IAI46_23800 RNA-binding transcriptional accessory protein insig. 36 44
  Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 36 36
  Rahnella sp. WP5 EX31_RS04840 RNA-binding transcriptional accessory protein insig. 38 44
  Phocaeicola dorei CL03T12C01 ABI39_RS03195 S1 RNA-binding domain-containing protein insig. 36 45
  Sinorhizobium meliloti 1021 SMc02644 hypothetical protein insig. 34 45
  Azospirillum sp. SherDot2 MPMX19_02526 Polyribonucleotide nucleotidyltransferase no data 33 48
  Azospirillum brasilense Sp245 AZOBR_RS01385 polynucleotide phosphorylase no data 33 48
  Acinetobacter baumannii LAC-4 RR41_RS01395 RNA-binding transcriptional accessory protein insig. 33 59
  Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 32 39
  Klebsiella pneumoniae MKP103 KDGMDA_06990 Protein YhgF sig. 37 44
  Escherichia coli BL21 ECD_03259 putative transcriptional accessory protein insig. 36 44
  Escherichia fergusonii Becca EFB2_00421 Protein YhgF insig. 36 44
  Escherichia coli ECOR27 NOLOHH_08815 yhgF Protein YhgF insig. 36 44
  Escherichia coli ECRC100 OKFHMN_17025 yhgF Protein YhgF cofit 36 44
  Escherichia coli ECRC101 MCAODC_07555 yhgF Protein YhgF insig. 36 44
  Escherichia coli ECRC102 NIAGMN_14795 yhgF Protein YhgF cofit 36 44
  Escherichia coli ECRC62 BNILDI_02705 yhgF Protein YhgF cofit 36 44
  Escherichia coli ECRC98 JDDGAC_20655 yhgF Protein YhgF insig. 36 44
  Escherichia coli ECRC99 KEDOAH_11115 yhgF Protein YhgF no data 36 44
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00296 Protein YhgF cofit 36 44
  Escherichia coli Nissle 1917 ECOLIN_RS19465 Tex family protein sig. 36 44
  Escherichia coli BW25113 b3407 yhgF orf, hypothetical protein (VIMSS) sig. 36 44
  Xanthobacter sp. DMC5 GFF2302 Polyribonucleotide nucleotidyltransferase no data 31 44
  Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 31 39
  Klebsiella pneumoniae MRSN742743 KFA93_RS10145 Tex family protein insig. 37 44
  Escherichia coli ECOR38 HEPCGN_15835 yhgF Protein YhgF insig. 36 44
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 34 37
  Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 34 37
  Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 34 37
  Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 34 37
  Shewanella amazonensis SB2B Sama_3508 hypothetical protein (RefSeq) sig. 38 47
  Azospirillum sp. SherDot2 MPMX19_04277 Protein YhgF insig. 35 51
  Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 33 39
  Magnetospirillum magneticum AMB-1 AMB_RS17285 RNA-binding transcriptional accessory protein cofit 33 46
  Phaeobacter inhibens DSM 17395 PGA1_c09850 S1 domain-containing protein insig. 36 46
  Desulfovibrio vulgaris Miyazaki F DvMF_0870 RNA binding S1 domain protein (RefSeq) insig. 35 44
  Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 34 37
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF611 Transcription accessory protein (S1 RNA-binding domain) insig. 36 44
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 28 41
  Sinorhizobium meliloti 1021 SMc00324 polynucleotide phosphorylase/polyadenylase no data 33 47
  Klebsiella michiganensis M5al BWI76_RS26655 transcription accessory protein insig. 38 44
  Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 32 37
  Castellaniella sp019104865 MT123 ABCV34_RS01870 Tex family protein insig. 32 56
  Agrobacterium fabrum C58 Atu0082 polyribonucleotide nucleotidyltransferase no data 31 47
  Bifidobacterium breve UCC2003 BBR_RS12245 polyribonucleotide nucleotidyltransferase insig. 55 20
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 34 37
  Acinetobacter radioresistens SK82 MPMX26_00275 Polyribonucleotide nucleotidyltransferase insig. 33 49
  Azospirillum brasilense Sp245 AZOBR_RS14535 RNA-binding protein insig. 34 56
  Marinobacter adhaerens HP15 HP15_216 DNA damage response protein (yhgF like) (from data) sig. 37 45
  Desulfovibrio vulgaris Hildenborough JW710 DVU2246 S1 RNA binding domain protein (TIGR) insig. 36 37
  Shewanella sp. ANA-3 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) sig. 35 47
  Shewanella oneidensis MR-1 SO4629 conserved hypothetical protein (NCBI ptt file) sig. 35 47
  Rhizobium sp. OAE497 ABIE40_RS05475 Tex family protein insig. 34 44
  Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 32 41
  Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 31 41
  Herbaspirillum seropedicae SmR1 HSERO_RS20945 RNA-binding protein sig. 33 52
  Acinetobacter radioresistens SK82 MPMX26_02837 Protein YhgF cofit 33 45
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 32 41
  Acinetobacter baumannii LAC-4 RR41_RS17185 polyribonucleotide nucleotidyltransferase sig. 34 45
  Caulobacter crescentus NA1000 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase no data 33 44
  Caulobacter crescentus NA1000 Δfur CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase no data 33 44
  Acidovorax sp. GW101-3H11 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) no data 32 48
  Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 31 35
  Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 31 41
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 31 41
  Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 31 41
  Lysobacter sp. OAE881 ABIE51_RS00300 Tex family protein insig. 35 48
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 32 41
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3436 polyribonucleotide nucleotidyltransferase no data 27 72
  Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 40 32
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 36 36
  Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 36 35
  Alteromonas macleodii MIT1002 MIT1002_04012 hypothetical protein insig. 35 44
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2426.1 Transcription accessory protein (S1 RNA-binding domain) insig. 35 44
  Pseudomonas aeruginosa MRSN321 DY961_RS10465 rnr;go_function=RNA ribonuclease R strong 32 39
  Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 32 39
  Pseudomonas aeruginosa PUPa3 DQ20_RS51590 rnr;go_function=RNA ribonuclease R strong 32 39
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 32 38
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2140 polyribonucleotide nucleotidyltransferase no data 30 47
  Dechlorosoma suillum PS Dsui_2546 transcriptional accessory protein cofit 32 44
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13355 polyribonucleotide nucleotidyltransferase no data 31 58
  Rhodanobacter sp. FW510-T8 OKGIIK_05870 pnp polyribonucleotide nucleotidyltransferase no data 34 58
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 31 40
  Shewanella sp. ANA-3 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) no data 34 42
  Shewanella oneidensis MR-1 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) no data 34 42
  Pseudomonas segetis P6 ACVTMO_RS03815 Tex family protein sig. 34 44
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 31 49
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13960 pnp polyribonucleotide nucleotidyltransferase no data 29 63
  Erwinia tracheiphila SCR3 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase no data 29 63
  Pseudomonas simiae WCS417 PS417_01165 transcription accessory protein sig. 36 44
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01025 polyribonucleotide nucleotidyltransferase no data 32 58
  Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 31 40
  Rhodanobacter denitrificans MT42 LRK55_RS00800 polyribonucleotide nucleotidyltransferase no data 32 58
  Shewanella loihica PV-4 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) no data 31 47
  Agrobacterium fabrum C58 Atu0648 hypothetical protein insig. 38 27
  Rhodospirillum rubrum S1H Rru_A0293 Ribosomal protein S1 (NCBI) no data 36 45
  Pseudomonas syringae pv. syringae B728a Psyr_0257 RNA binding S1 insig. 32 51
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0257 RNA binding S1 insig. 32 51
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 28 37
  Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 25 66
  Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 25 66
  Phaeobacter inhibens DSM 17395 PGA1_c33000 polyribonucleotide nucleotidyltransferase Pnp no data 38 35
  Pseudomonas aeruginosa MRSN321 DY961_RS09440 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase no data 35 50
  Pseudomonas aeruginosa PA14 IKLFDK_29900 polyribonucleotide nucleotidyltransferase strong 35 50
  Pseudomonas aeruginosa PUPa3 DQ20_RS52590 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase no data 35 50
  Rhizobium sp. OAE497 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase no data 30 47
  Paraburkholderia sabiae LMG 24235 QEN71_RS06045 Tex family protein strong 29 45
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) no data 28 54
  Pseudomonas fluorescens FW300-N2E3 AO353_11740 DNA damage response protein (yhgF like) (from data) sig. 35 44
  Burkholderia phytofirmans PsJN BPHYT_RS12510 RNA-binding protein insig. 29 45
  Bifidobacterium breve UCC2003 BBR_RS14275 30S ribosomal protein S1 insig. 29 49
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS08985 polyribonucleotide nucleotidyltransferase no data 28 67
  Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 33 39
  Pseudomonas fluorescens GW456-L13 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) insig. 33 48