Homologs of MMP_RS02335 from Methanococcus maripaludis S2

DNA-directed RNA polymerase
SEED: DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)
KEGG: DNA-directed RNA polymerase subunit E'

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Methanococcus maripaludis S2 MMP_RS02335 DNA-directed RNA polymerase no data 100 100
o Methanococcus maripaludis JJ MMJJ_RS02940 DNA-directed RNA polymerase no data 99 100
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 48 34
  Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 46 34
  Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 44 41
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 42 35
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 40 37
  Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 37 49
  Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 44 37
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 40 37
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 40 37
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 40 37
  Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 38 37
  Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 42 39
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11220 ribonuclease R cofit 42 39
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 39 37
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 38 37
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 42 34
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 36 48
  Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 35 51
  Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 39 39
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 41 39
  Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 41 39
  Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 39 39
  Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 39 39
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 36 48
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 36 48
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 39 39
  Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 39 39
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R insig. 39 39
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 39 39
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 39 39
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 39 39
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 39 39
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 39 39
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 36 48
  Variovorax sp. SCN45 GFF7962 3'-to-5' exoribonuclease RNase R no data 36 37
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 40 41
  Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 40 41
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 37 48
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 35 37
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 30 48
  Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 37 39
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 34 49
  Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 38 39
  Erwinia amylovora T8 OLJFJH_04170 RNA-binding transcriptional accessory protein cofit 39 44
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 30 43
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_11945 RNA-binding transcriptional accessory protein no data 38 44
  Erwinia tracheiphila SCR3 LU632_RS22955 RNA-binding transcriptional accessory protein insig. 38 44
  Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 36 39
  Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 36 39
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 36 39
  Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 36 39
  Pectobacterium carotovorum WPP14 HER17_RS01615 RNA-binding transcriptional accessory protein cofit 38 44
  Vibrio cholerae E7946 ATCC 55056 CSW01_13705 RNA-binding transcriptional accessory protein insig. 36 52
  Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 36 39
  Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 35 39
  Rhodospirillum rubrum S1H Rru_A3785 3' exoribonuclease (NCBI) no data 37 48
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 36 39
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 36 39
  Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 35 39
  Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 35 39
  Pseudomonas segetis P6 ACVTMO_RS20555 rnr ribonuclease R strong 32 47
  Dickeya dianthicola 67-19 HGI48_RS19770 RNA-binding transcriptional accessory protein insig. 37 44
  Dickeya dianthicola ME23 DZA65_RS20860 RNA-binding transcriptional accessory protein insig. 37 44
  Enterobacter asburiae PDN3 EX28DRAFT_4136 Transcriptional accessory protein insig. 38 44
  Enterobacter sp. TBS_079 MPMX20_04294 Protein YhgF insig. 38 44
  Dickeya dadantii 3937 DDA3937_RS19635 RNA-binding transcriptional accessory protein sig. 37 44
  Pantoea sp. MT58 IAI47_01805 RNA-binding transcriptional accessory protein insig. 37 44
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18325 RNA-binding transcriptional accessory protein cofit 37 44
  Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 35 39
  Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 35 39
  Magnetospirillum magneticum AMB-1 AMB_RS20820 polyribonucleotide nucleotidyltransferase no data 34 48
  Rhodopseudomonas palustris CGA009 TX73_002245 polyribonucleotide nucleotidyltransferase no data 35 44
  Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 35 39
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 35 39
  Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 35 39
  Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 35 39
  Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 35 39
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 35 39
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 33 39
  Shewanella loihica PV-4 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) sig. 39 44
  Serratia liquefaciens MT49 IAI46_23800 RNA-binding transcriptional accessory protein insig. 36 44
  Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 36 36
  Rahnella sp. WP5 EX31_RS04840 RNA-binding transcriptional accessory protein insig. 38 44
  Phocaeicola dorei CL03T12C01 ABI39_RS03195 S1 RNA-binding domain-containing protein insig. 36 45
  Sinorhizobium meliloti 1021 SMc02644 hypothetical protein insig. 34 45
  Azospirillum sp. SherDot2 MPMX19_02526 Polyribonucleotide nucleotidyltransferase no data 33 48
  Azospirillum brasilense Sp245 AZOBR_RS01385 polynucleotide phosphorylase no data 33 48
  Acinetobacter baumannii LAC-4 RR41_RS01395 RNA-binding transcriptional accessory protein insig. 33 59
  Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 32 39
  Klebsiella pneumoniae MKP103 KDGMDA_06990 Protein YhgF sig. 37 44
  Escherichia coli BL21 ECD_03259 putative transcriptional accessory protein insig. 36 44
  Escherichia fergusonii Becca EFB2_00421 Protein YhgF insig. 36 44
  Escherichia coli ECOR27 NOLOHH_08815 yhgF Protein YhgF insig. 36 44
  Escherichia coli ECRC100 OKFHMN_17025 yhgF Protein YhgF cofit 36 44
  Escherichia coli ECRC101 MCAODC_07555 yhgF Protein YhgF insig. 36 44