Homologs of GFF926 from Xanthobacter sp. DMC5

Putative pre-16S rRNA nuclease
SEED: Putative Holliday junction resolvase YqgF
KEGG: putative holliday junction resolvase

116 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF926 Putative pre-16S rRNA nuclease no data 100 100
o Rhodopseudomonas palustris CGA009 TX73_016100 Holliday junction resolvase RuvX no data 69 91
o Rhodospirillum rubrum S1H Rru_A3178 Holliday junction resolvase YqgF (NCBI) no data 62 88
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04270 Holliday junction resolvase RuvX no data 58 85
o Bosea sp. OAE506 ABIE41_RS17195 Holliday junction resolvase RuvX no data 58 85
o Sinorhizobium meliloti 1021 SMc01355 Holliday junction resolvase-like protein no data 56 85
o Dinoroseobacter shibae DFL-12 Dshi_1064 Holliday junction resolvase YqgF (RefSeq) no data 64 80
o Agrobacterium fabrum C58 Atu1316 hypothetical protein no data 57 85
o Rhizobium sp. OAE497 ABIE40_RS07415 Holliday junction resolvase RuvX no data 55 88
  Magnetospirillum magneticum AMB-1 AMB_RS08015 Holliday junction resolvase RuvX no data 61 76
o Phaeobacter inhibens DSM 17395 PGA1_c19190 RNAse H-fold protein YqgF no data 56 81
o Caulobacter crescentus NA1000 CCNA_02521 endonuclease involved in recombination no data 54 85
o Caulobacter crescentus NA1000 Δfur CCNA_02521 endonuclease involved in recombination cofit 54 85
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0078 RNAse H-fold protein YqgF no data 54 79
o Azospirillum brasilense Sp245 AZOBR_RS20625 Holliday junction resolvase insig. 54 85
o Azospirillum sp. SherDot2 MPMX19_01571 Putative pre-16S rRNA nuclease no data 52 87
o Sphingobium sp. HT1-2 GFF2047 Putative pre-16S rRNA nuclease YqgF no data 53 80
  Synechocystis sp000284455 PCC 6803 SGL_RS17860 Holliday junction resolvase RuvX strong 35 79
  Synechococcus elongatus PCC 7942 Synpcc7942_2398 Holliday junction resolvase-like protein strong 35 78
  Mycobacterium tuberculosis H37Rv Rv2554c Conserved protein no data 39 87
  Klebsiella michiganensis M5al BWI76_RS24085 Holliday junction resolvase RuvX no data 36 75
  Ralstonia sp. UNC404CL21Col ABZR87_RS08615 Holliday junction resolvase RuvX no data 31 76
  Klebsiella pneumoniae MKP103 KDGMDA_04600 YqgE/AlgH family protein no data 36 75
  Klebsiella pneumoniae MRSN742743 KFA93_RS12145 ruvX;go_process=rRNA Holliday junction resolvase RuvX no data 36 75
  Kangiella aquimarina DSM 16071 B158DRAFT_0192 RNAse H-fold protein YqgF no data 35 74
  Escherichia coli ECOR27 NOLOHH_11135 ruvX Holliday junction resolvase RuvX no data 35 75
  Escherichia coli ECOR38 HEPCGN_18570 ruvX Holliday junction resolvase RuvX no data 35 75
  Escherichia coli ECRC62 BNILDI_09715 ruvX Holliday junction resolvase RuvX no data 35 75
  Escherichia coli BL21 ECD_02779 putative Holliday junction resolvase no data 35 75
  Escherichia fergusonii Becca EFB2_00953 Putative pre-16S rRNA nuclease no data 35 75
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00769 Putative pre-16S rRNA nuclease no data 35 75
  Escherichia coli Nissle 1917 ECOLIN_RS16405 Holliday junction resolvase RuvX no data 35 75
  Escherichia coli BW25113 b2949 yqgF Holliday junction resolvase-like protein (NCBI) no data 35 75
  Shewanella loihica PV-4 Shew_1143 Holliday junction resolvase-like protein (RefSeq) no data 34 74
  Methylophilus sp. DMC18 GFF870 Putative pre-16S rRNA nuclease no data 35 75
  Escherichia coli ECRC100 OKFHMN_19265 ruvX Holliday junction resolvase RuvX no data 34 75
  Escherichia coli ECRC101 MCAODC_09785 ruvX Holliday junction resolvase RuvX no data 34 75
  Escherichia coli ECRC102 NIAGMN_17030 ruvX Holliday junction resolvase RuvX no data 34 75
  Escherichia coli ECRC98 JDDGAC_22895 ruvX Holliday junction resolvase RuvX no data 34 75
  Escherichia coli ECRC99 KEDOAH_08875 ruvX Holliday junction resolvase RuvX no data 34 75
  Ralstonia solanacearum UW163 UW163_RS00950 Holliday junction resolvase RuvX no data 29 81
  Enterobacter sp. TBS_079 MPMX20_03807 Putative pre-16S rRNA nuclease no data 35 75
  Bifidobacterium breve UCC2003 BBR_RS15065 Holliday junction resolvase RuvX no data 32 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS12615 Holliday junction resolvase RuvX no data 29 81
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3051 Putative Holliday junction resolvase YggF no data 35 75
  Pseudomonas segetis P6 ACVTMO_RS03075 ruvX Holliday junction resolvase RuvX no data 38 76
  Serratia liquefaciens MT49 IAI46_21400 Holliday junction resolvase RuvX no data 36 74
  Enterobacter asburiae PDN3 EX28DRAFT_2987 RNAse H-fold protein YqgF no data 35 75
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_03440 ruvX Holliday junction resolvase RuvX no data 35 74
  Erwinia tracheiphila SCR3 LU632_RS05470 ruvX Holliday junction resolvase RuvX no data 35 74
  Pseudomonas fluorescens FW300-N2C3 AO356_13460 Holliday junction resolvase no data 39 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4608 Putative Holliday junction resolvase YggF no data 39 76
  Pantoea sp. MT58 IAI47_03605 Holliday junction resolvase RuvX no data 35 74
  Dickeya dianthicola 67-19 HGI48_RS18505 Holliday junction resolvase RuvX no data 34 74
  Shewanella amazonensis SB2B Sama_2473 Holliday junction resolvase-like protein (RefSeq) no data 33 74
  Cupriavidus basilensis FW507-4G11 RR42_RS15870 Holliday junction DNA helicase no data 32 77
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS03840 ruvX Holliday junction resolvase RuvX no data 35 74
  Dickeya dadantii 3937 DDA3937_RS18570 Holliday junction resolvase RuvX no data 33 74
  Ralstonia solanacearum PSI07 RPSI07_RS20645 Holliday junction resolvase RuvX no data 28 81
  Dickeya dianthicola ME23 DZA65_RS19640 Holliday junction resolvase RuvX no data 34 74
  Pseudomonas protegens RBAN4 FABNJH_29390 ruvX Holliday junction resolvase RuvX no data 39 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2349 Putative Holliday junction resolvase YggF no data 38 76
  Erwinia amylovora T8 OLJFJH_08560 Holliday junction resolvase RuvX no data 37 73
  Pectobacterium carotovorum WPP14 HER17_RS02625 Holliday junction resolvase RuvX no data 35 74
  Pseudomonas sp. DMC3 GFF202 Putative pre-16S rRNA nuclease no data 39 76
  Fusobacterium nucleatum SB010 HUW76_04355 Holliday junction resolvase RuvX no data 32 75
  Pseudomonas syringae pv. syringae B728a Psyr_0484 Conserved hypothetical protein 250 no data 35 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0484 Conserved hypothetical protein 250 no data 35 76
  Pseudomonas sp. RS175 PFR28_04235 Putative pre-16S rRNA nuclease no data 39 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1018 Putative Holliday junction resolvase YggF no data 38 76
  Pseudomonas aeruginosa PUPa3 DQ20_RS37300 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 37 76
  Pseudomonas sp. SVBP6 COO64_RS13585 ruvX Holliday junction resolvase RuvX no data 35 76
  Pseudomonas aeruginosa MRSN321 DY961_RS22000 ruvX;go_component=cytoplasm|0005737||IEA;go_function=molecular_function|0003674||IEA;go_process=biological_process|0008150||IEA;inference=COORDINATES Holliday junction resolvase RuvX no data 37 76
  Pseudomonas aeruginosa PA14 IKLFDK_23400 Holliday junction resolvase RuvX no data 37 76
  Rahnella sp. WP5 EX31_RS02675 Holliday junction resolvase RuvX no data 35 74
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18175 Holliday junction resolvase RuvX no data 30 76
  Pseudomonas sp. S08-1 OH686_10930 Putative pre-16S rRNA nuclease YqgF no data 37 76
  Shewanella oneidensis MR-1 SO3347 conserved hypothetical protein TIGR00250 (NCBI ptt file) no data 32 74
  Pseudomonas sp. BP01 JOY50_RS09710 ruvX Holliday junction resolvase RuvX no data 36 76
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22055 Holliday junction resolvase RuvX no data 27 76
  Desulfovibrio vulgaris Miyazaki F DvMF_2352 Holliday junction resolvase YqgF (RefSeq) no data 39 76
  Pseudomonas fluorescens FW300-N2E3 AO353_08125 Holliday junction resolvase no data 37 76
  Pseudomonas orientalis W4I3 QF045_RS01090 Holliday junction resolvase RuvX no data 37 76
  Pseudomonas stutzeri RCH2 Psest_0293 RNAse H-fold protein YqgF no data 37 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20370 Holliday junction resolvase RuvX no data 33 74
  Pseudomonas fluorescens SBW25 PFLU_RS28335 Holliday junction resolvase RuvX no data 37 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28335 Holliday junction resolvase RuvX no data 37 76
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05475 Putative pre-16S rRNA nuclease no data 37 76
  Pseudomonas simiae WCS417 PS417_26690 Holliday junction resolvase no data 37 76
  Pseudomonas putida KT2440 PP_4996 Putative Holliday junction resolvase no data 36 76
  Rhodanobacter denitrificans MT42 LRK55_RS03985 Holliday junction resolvase RuvX no data 32 78
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS04215 Holliday junction resolvase RuvX no data 32 78
  Ralstonia solanacearum GMI1000 RS_RS03400 Holliday junction resolvase RuvX no data 27 71
  Shewanella sp. ANA-3 Shewana3_1199 Holliday junction resolvase-like protein (RefSeq) no data 32 74
  Marinobacter adhaerens HP15 HP15_3509 Holliday junction resolvase no data 32 73
  Herbaspirillum seropedicae SmR1 HSERO_RS02320 Holliday junction resolvase no data 32 74
  Paraburkholderia graminis OAS925 ABIE53_001129 putative Holliday junction resolvase no data 30 82
  Desulfovibrio vulgaris Hildenborough JW710 DVU3070 conserved hypothetical protein (TIGR) no data 34 76
  Alteromonas macleodii MIT1002 MIT1002_03057 Putative Holliday junction resolvase no data 31 73
  Dechlorosoma suillum PS Dsui_0594 RNAse H-fold protein YqgF no data 28 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS25790 Holliday junction resolvase RuvX no data 27 85
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00200 Holliday junction resolvase RuvX no data 27 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04815 putative holliday junction resolvase no data 28 82
  Acinetobacter radioresistens SK82 MPMX26_00237 Putative pre-16S rRNA nuclease no data 27 75
  Bacteroides stercoris CC31F HMPREF1181_RS04285 Holliday junction resolvase RuvX no data 28 76
  Castellaniella sp019104865 MT123 ABCV34_RS10725 Holliday junction resolvase RuvX no data 34 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1721.1 Putative Holliday junction resolvase YggF no data 32 79
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1885 RNAse H-fold protein YqgF no data 30 80
  Burkholderia phytofirmans PsJN BPHYT_RS04225 Holliday junction resolvase no data 29 82
  Acinetobacter baumannii LAC-4 RR41_RS17390 Holliday junction resolvase RuvX no data 27 75
  Lysobacter sp. OAE881 ABIE51_RS16020 Holliday junction resolvase RuvX no data 29 57
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS10385 Holliday junction resolvase RuvX no data 30 56
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS05710 Holliday junction resolvase RuvX no data 31 56
  Bacteroides ovatus ATCC 8483 BACOVA_01773 Holliday junction resolvase-like protein no data 25 76
  Vibrio cholerae E7946 ATCC 55056 CSW01_02480 Holliday junction resolvase RuvX no data 27 74
  Bacteroides thetaiotaomicron VPI-5482 BT0419 putative endonuclease (NCBI ptt file) no data 25 76