Homologs of GFF3478 from Sphingobium sp. HT1-2

UPF0758 family protein
SEED: DNA repair protein RadC

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3478 UPF0758 family protein cofit 100 100
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3175 DNA repair protein radc insig. 72 100
  Rhizobium sp. OAE497 ABIE40_RS08620 DNA repair protein RadC cofit 58 99
  Agrobacterium fabrum C58 Atu1607 DNA repair protein insig. 56 100
  Xanthobacter sp. DMC5 GFF65 hypothetical protein insig. 56 99
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS00510 DNA repair protein RadC insig. 55 99
  Azospirillum brasilense Sp245 AZOBR_RS04400 DNA repair protein RadC insig. 54 99
  Sinorhizobium meliloti 1021 SMc00299 DNA repair protein RadC insig. 58 99
  Azospirillum sp. SherDot2 MPMX19_00291 hypothetical protein insig. 58 99
  Bosea sp. OAE506 ABIE41_RS13815 DNA repair protein RadC insig. 52 99
  Dinoroseobacter shibae DFL-12 Dshi_3569 DNA repair protein RadC (RefSeq) insig. 52 100
  Rhodopseudomonas palustris CGA009 TX73_002000 DNA repair protein RadC insig. 52 99
  Phaeobacter inhibens DSM 17395 PGA1_c34550 DNA repair protein RadC insig. 51 99
  Rhodospirillum rubrum S1H Rru_A0732 DNA repair protein RadC (NCBI) insig. 49 99
  Escherichia coli BW25113 b2644 yfjY CP4-57 prophage; predicted DNA repair protein (NCBI) insig. 45 99
  Pseudomonas segetis P6 MPMX49_01951 hypothetical protein no data 43 99
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18725 JAB domain-containing protein cofit 42 99
  Desulfovibrio vulgaris Hildenborough JW710 DVU1193 radC DNA repair protein RadC (TIGR) sig. 40 99
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3244.1 DNA repair protein RadC insig. 44 94
  Pantoea sp. MT58 IAI47_00620 DNA repair protein RadC insig. 40 99
  Castellaniella sp019104865 MT123 ABCV34_RS03255 JAB domain-containing protein insig. 43 96
  Caulobacter crescentus NA1000 CCNA_02830 MPN domain protein insig. 57 62
  Caulobacter crescentus NA1000 Δfur CCNA_02830 MPN domain protein cofit 57 62
  Methylophilus sp. DMC18 GFF1632 hypothetical protein insig. 44 99
  Desulfovibrio vulgaris Miyazaki F DvMF_3086 DNA repair protein RadC (RefSeq) insig. 40 99
  Escherichia coli BW25113 b0247 ykfG CP4-6 prophage; predicted DNA repair protein (NCBI) insig. 40 99
  Fusobacterium nucleatum SB010 HUW76_05635 DNA repair protein RadC strong 38 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_08960 DNA repair protein RadC insig. 43 84
  Rahnella sp. WP5 EX31_RS14470 JAB domain-containing protein insig. 46 84
  Escherichia coli ECOR38 HEPCGN_14040 yeeS UPF0758 protein YeeS insig. 45 99
  Escherichia coli ECRC100 OKFHMN_05640 yeeS UPF0758 protein YeeS no data 44 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2126 DNA repair protein RadC insig. 47 80
  Ralstonia solanacearum UW163 UW163_RS24075 DNA repair protein RadC insig. 43 99
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1170 DNA repair protein RadC insig. 38 99
  Alteromonas macleodii MIT1002 MIT1002_00049 DNA repair protein RadC insig. 44 99
  Escherichia fergusonii Becca EFB2_04442 hypothetical protein insig. 44 99
  Ralstonia solanacearum GMI1000 RS_RS13130 DNA repair protein RadC insig. 40 99
  Escherichia fergusonii Becca EFB2_00050 hypothetical protein no data 44 99
  Escherichia coli ECRC100 OKFHMN_03920 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC101 MCAODC_23280 yeeS UPF0758 protein YeeS insig. 44 99
  Escherichia coli ECRC102 NIAGMN_03360 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC98 JDDGAC_07580 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC99 KEDOAH_18515 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC99 KEDOAH_23835 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS16915 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS16945 RadC family protein no data 44 99
  Escherichia coli ECOR38 HEPCGN_11065 yeeS UPF0758 protein YeeS sig. 44 99
  Escherichia fergusonii Becca EFB2_00874 hypothetical protein no data 44 99
  Escherichia fergusonii Becca EFB2_01854 hypothetical protein no data 44 99
  Escherichia fergusonii Becca EFB2_02949 hypothetical protein insig. 44 99
  Escherichia fergusonii Becca EFB2_04161 hypothetical protein insig. 44 99
  Escherichia coli ECRC100 OKFHMN_25055 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC101 MCAODC_20330 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC102 NIAGMN_22555 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC98 JDDGAC_29180 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli ECRC99 KEDOAH_03060 yeeS UPF0758 protein YeeS no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS01260 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS01340 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS05935 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS16870 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS26130 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS26505 RadC family protein no data 44 99
  Escherichia coli BW25113 b2002 yeeS CP4-44 prophage; predicted DNA repair protein (NCBI) insig. 44 99
  Marinobacter adhaerens HP15 HP15_3321 DNA repair protein RadC-like protein insig. 44 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_01155 DNA repair protein RadC insig. 47 84
  Escherichia coli Nissle 1917 ECOLIN_RS23965 RadC family protein no data 44 99
  Escherichia coli Nissle 1917 ECOLIN_RS25650 RadC family protein no data 44 99
  Paraburkholderia graminis OAS925 ABIE53_003289 DNA repair protein RadC insig. 40 97
  Pseudomonas fluorescens FW300-N2E3 AO353_09220 hypothetical protein insig. 49 80
  Variovorax sp. SCN45 GFF4374 UPF0758 family protein insig. 39 99
  Shewanella sp. ANA-3 Shewana3_1252 DNA repair protein RadC (RefSeq) insig. 40 99
  Pseudomonas sp. RS175 PFR28_04412 hypothetical protein insig. 47 80
  Pseudomonas simiae WCS417 PS417_27770 hypothetical protein insig. 47 80
  Ralstonia sp. UNC404CL21Col ABZR87_RS00330 DNA repair protein RadC insig. 45 84
  Escherichia coli ECOR38 HEPCGN_03330 yeeS UPF0758 protein YeeS insig. 43 99
  Serratia liquefaciens MT49 IAI46_24825 DNA repair protein RadC cofit 42 99
  Dickeya dianthicola 67-19 HGI48_RS00700 DNA repair protein RadC insig. 40 99
  Dickeya dianthicola ME23 DZA65_RS00755 JAB domain-containing protein insig. 40 99
  Pectobacterium carotovorum WPP14 HER17_RS20830 DNA repair protein RadC insig. 40 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04066 DNA replication and repair protein RadC insig. 39 97
  Herbaspirillum seropedicae SmR1 HSERO_RS05945 hypothetical protein insig. 43 84
  Dickeya dadantii 3937 DDA3937_RS03870 DNA repair protein RadC insig. 37 99
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_07780 radC DNA repair protein RadC cofit 40 99
  Erwinia tracheiphila SCR3 LU632_RS21995 radC DNA repair protein RadC insig. 40 99
  Dickeya dianthicola 67-19 HGI48_RS08270 DNA repair protein RadC insig. 37 99
  Pseudomonas sp. SVBP6 COO64_RS01465 radC DNA repair protein RadC insig. 47 80
  Pseudomonas aeruginosa PA14 IKLFDK_26860 DNA repair protein RadC insig. 46 94
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00021 hypothetical protein cofit 46 80
  Pseudomonas fluorescens SBW25 PFLU_RS29445 JAB domain-containing protein insig. 46 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29445 JAB domain-containing protein insig. 46 80
  Escherichia coli Nissle 1917 ECOLIN_RS11855 RadC family protein no data 43 99
  Enterobacter sp. TBS_079 MPMX20_00581 hypothetical protein insig. 36 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4377 DNA repair protein RadC insig. 46 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1996 DNA repair protein RadC insig. 41 94
  Bacteroides stercoris CC31F HMPREF1181_RS01385 JAB domain-containing protein insig. 40 92
  Bacteroides thetaiotaomicron VPI-5482 BT2985 DNA repair protein (NCBI ptt file) insig. 40 92
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS01350 JAB domain-containing protein insig. 40 92
  Dickeya dadantii 3937 DDA3937_RS20515 DNA repair protein RadC insig. 39 99
  Erwinia amylovora T8 OLJFJH_05795 DNA repair protein RadC insig. 38 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_02700 hypothetical protein insig. 38 99