Homologs of GFF3442 from Variovorax sp. SCN45

RidA/YER057c/UK114 superfamily protein
SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF3442 RidA/YER057c/UK114 superfamily protein insig. 100 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS15435 RidA family protein insig. 85 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase strong 74 98
  Burkholderia phytofirmans PsJN BPHYT_RS10240 translation initiation inhibitor insig. 76 69
o Sinorhizobium meliloti 1021 SM_b21439 translation initiation inhibitor protein insig. 42 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11845 RidA family protein strong 37 96
  Rhodanobacter sp. FW510-T8 OKGIIK_12095 ridA reactive intermediate/imine deaminase strong 38 96
  Rhodanobacter denitrificans MT42 LRK55_RS11525 RidA family protein cofit 37 96
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11800 RidA family protein strong 37 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1205.1 hypothetical protein cofit 39 81
o Pseudomonas putida KT2440 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase strong 37 87
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 37 87
o Pseudomonas sp. S08-1 OH686_13545 RidA/YER057c/UK114 superfamily protein strong 37 87
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16740 RidA family protein strong 36 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1327 endoribonuclease L-PSP, putative sig. 34 82
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 37 99
  Lysobacter sp. OAE881 ABIE51_RS17260 RidA family protein strong 35 96
o Pseudomonas fluorescens SBW25 PFLU_RS29515 RidA family protein strong 37 87
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29515 RidA family protein strong 37 87
o Pseudomonas sp. BP01 JOY50_RS08980 RidA family protein cofit 37 87
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00035 2-iminobutanoate/2-iminopropanoate deaminase strong 37 87
o Pseudomonas sp. RS175 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase strong 37 87
o Pseudomonas sp. SVBP6 COO64_RS01560 RidA family protein strong 37 87
o Pseudomonas orientalis W4I3 QF045_RS02190 RidA family protein strong 37 87
o Pseudomonas simiae WCS417 PS417_27835 endoribonuclease strong 37 87
o Pseudomonas fluorescens GW456-L13 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 37 87
o Pseudomonas fluorescens FW300-N2E3 AO353_09285 reactive intermediate/imine deaminase strong 37 87
o Pseudomonas sp. DMC3 GFF420 2-iminobutanoate/2-iminopropanoate deaminase strong 37 87
o Pseudomonas fluorescens FW300-N2C3 AO356_12475 reactive intermediate/imine deaminase strong 37 87
o Pseudomonas aeruginosa MRSN321 DY961_RS12585 RidA family protein strong 38 87
o Pseudomonas aeruginosa PA14 IKLFDK_26760 reactive intermediate/imine deaminase strong 38 87
o Pseudomonas aeruginosa PUPa3 DQ20_RS49540 RidA family protein strong 38 87
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 36 87
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17590 RidA family protein sig. 37 83
o Pseudomonas stutzeri RCH2 Psest_3818 endoribonuclease L-PSP, putative strong 36 87
  Pseudomonas syringae pv. syringae B728a Psyr_0208 endoribonuclease L-PSP strong 38 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0208 endoribonuclease L-PSP strong 38 81
o Dechlorosoma suillum PS Dsui_0312 endoribonuclease L-PSP, putative no data 40 87
  Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 37 88
o Shewanella amazonensis SB2B Sama_0263 YjgF-like protein (RefSeq) strong 38 87
  Pseudomonas segetis P6 ACVTMO_RS00185 RidA family protein strong 37 82
o Kangiella aquimarina DSM 16071 B158DRAFT_0573 endoribonuclease L-PSP, putative sig. 35 90
  Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 38 82
  Synechococcus elongatus PCC 7942 Synpcc7942_0972 YjgF-like protein strong 38 96
o Shewanella loihica PV-4 Shew_3500 putative endoribonuclease L-PSP (RefSeq) strong 38 82
  Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 36 82
  Shewanella oneidensis MR-1 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) strong 37 79
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 38 82
  Shewanella sp. ANA-3 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) cofit 37 79
  Shewanella sp. ANA-3 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) sig. 35 84
  Desulfovibrio vulgaris Hildenborough JW710 DVU2203 endoribonuclease, L-PSP family (TIGR) sig. 38 91
o Alteromonas macleodii MIT1002 MIT1002_00109 Putative reactive intermediate deaminase TdcF strong 37 86
  Marinobacter adhaerens HP15 HP15_306 YjgF-like protein strong 35 95
  Cellulophaga baltica 18 M666_RS12150 RidA family protein insig. 32 82
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 36 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22825 reactive intermediate/imine deaminase strong 32 84
  Azospirillum sp. SherDot2 MPMX19_04018 2-aminomuconate deaminase insig. 40 75
  Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 36 82
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 39 75
  Acinetobacter radioresistens SK82 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase strong 31 99
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01145 Putative aminoacrylate peracid reductase RutC cofit 36 82
  Burkholderia phytofirmans PsJN BPHYT_RS29300 endoribonuclease L-PSP insig. 39 81
o Castellaniella sp019104865 MT123 ABCV34_RS03565 Rid family detoxifying hydrolase no data 30 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS03950 RidA family protein insig. 35 87
  Acinetobacter baumannii LAC-4 RR41_RS01650 RidA family protein sig. 30 99
  Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 40 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS17820 RidA family protein insig. 35 83
  Ralstonia solanacearum UW163 UW163_RS21320 RidA family protein insig. 35 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_931 Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) insig. 37 81
  Pseudomonas fluorescens SBW25 PFLU_RS13590 RidA family protein insig. 36 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13590 RidA family protein insig. 36 80
  Pseudomonas fluorescens FW300-N2C3 AO356_26795 reactive intermediate/imine deaminase insig. 41 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06511 reactive intermediate/imine deaminase insig. 40 75
  Burkholderia phytofirmans PsJN BPHYT_RS15355 endoribonuclease L-PSP insig. 40 75
  Methylophilus sp. DMC18 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase cofit 35 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 33 85
  Pantoea sp. MT58 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase strong 38 78
  Variovorax sp. OAS795 ABID97_RS22895 RidA family protein insig. 37 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_353 Bona fide RidA/YjgF/TdcF/RutC subgroup insig. 38 78
  Sphingobium sp. HT1-2 GFF1821 Putative aminoacrylate peracid reductase RutC @ RidA/YER057c/UK114 superfamily protein cofit 38 67
  Synechocystis sp000284455 PCC 6803 SGL_RS16325 RidA family protein strong 37 73
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup insig. 37 84
  Alteromonas macleodii MIT1002 MIT1002_03466 Putative aminoacrylate peracid reductase RutC insig. 36 76
  Azospirillum brasilense Sp245 AZOBR_RS04910 endoribonuclease L-PSP insig. 38 84
  Ralstonia sp. UNC404CL21Col ABZR87_RS05790 RidA family protein insig. 38 73
  Variovorax sp. SCN45 GFF6707 RidA/YER057c/UK114 superfamily protein insig. 37 81
  Agrobacterium fabrum C58 Atu3926 translation initiation inhibitor insig. 33 96
  Lysobacter sp. OAE881 ABIE51_RS12665 RidA family protein cofit 31 80
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08965 2-iminobutanoate/2-iminopropanoate deaminase strong 38 78
  Pseudomonas simiae WCS417 PS417_12920 endoribonuclease insig. 37 76
  Agrobacterium fabrum C58 Atu2498 hypothetical protein strong 42 67
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03858 2-iminobutanoate/2-iminopropanoate deaminase cofit 37 79
  Ralstonia solanacearum PSI07 RPSI07_RS05740 RidA family protein sig. 36 83
  Ralstonia solanacearum GMI1000 RS_RS23155 RidA family protein insig. 37 83
  Rahnella sp. WP5 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase insig. 39 78
  Enterobacter asburiae PDN3 EX28DRAFT_1916 pyrimidine utilization protein C insig. 40 58
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF928 Endoribonuclease L-PSP strong 38 78
  Caulobacter crescentus NA1000 CCNA_02886 RutC-family pyrimidine utilization protein C sig. 35 85
  Caulobacter crescentus NA1000 Δfur CCNA_02886 RutC-family pyrimidine utilization protein C cofit 35 85
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS07415 RidA family protein cofit 33 87