Homologs of GFF1081 from Xanthobacter sp. DMC5

Ribonuclease R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

171 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF1081 Ribonuclease R insig. 100 100
o Rhodopseudomonas palustris CGA009 TX73_016160 ribonuclease R insig. 65 90
o Bosea sp. OAE506 ABIE41_RS18140 ribonuclease R insig. 64 86
o Rhizobium sp. OAE497 ABIE40_RS07350 ribonuclease R insig. 60 87
o Sinorhizobium meliloti 1021 SMc01365 exoribonuclease II protein sig. 56 93
o Agrobacterium fabrum C58 Atu1303 exoribonuclease strong 57 86
o Phaeobacter inhibens DSM 17395 PGA1_c36430 putative ribonuclease R strong 51 88
o Magnetospirillum magneticum AMB-1 AMB_RS04465 ribonuclease R cofit 48 90
o Azospirillum brasilense Sp245 AZOBR_RS16165 ribonuclease R insig. 50 89
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08325 ribonuclease R cofit 49 91
o Caulobacter crescentus NA1000 CCNA_02537 ribonuclease R strong 50 86
o Caulobacter crescentus NA1000 Δfur CCNA_02537 ribonuclease R cofit 50 86
o Azospirillum sp. SherDot2 MPMX19_01812 Ribonuclease R insig. 50 86
o Dinoroseobacter shibae DFL-12 Dshi_0015 ribonuclease R (RefSeq) insig. 50 85
o Rhodospirillum rubrum S1H Rru_A3203 ribonuclease R (NCBI) cofit 49 86
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3266 ribonuclease R strong 45 89
o Sphingobium sp. HT1-2 GFF3533 '3'-to-5' exoribonuclease RNase R' transl_table=11 cofit 43 90
  Ralstonia sp. UNC404CL21Col ABZR87_RS10985 ribonuclease R sig. 35 86
  Ralstonia solanacearum PSI07 RPSI07_RS18030 ribonuclease R strong 35 92
  Ralstonia solanacearum GMI1000 RS_RS06155 ribonuclease R strong 34 92
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15345 ribonuclease R strong 35 86
  Ralstonia solanacearum UW163 UW163_RS12810 ribonuclease R insig. 35 86
  Escherichia coli BL21 ECD_04046 exoribonuclease R, RNase R insig. 38 71
  Escherichia coli BW25113 b4179 vacB putative enzyme (VIMSS) strong 38 71
  Escherichia coli ECRC100 OKFHMN_12220 rnr ribonuclease R cofit 38 71
  Escherichia coli ECRC101 MCAODC_02735 rnr ribonuclease R sig. 38 71
  Escherichia coli ECRC102 NIAGMN_10070 rnr ribonuclease R cofit 38 71
  Escherichia coli ECRC98 JDDGAC_15860 rnr ribonuclease R cofit 38 71
  Escherichia coli ECRC99 KEDOAH_15935 rnr ribonuclease R no data 38 71
  Klebsiella michiganensis M5al BWI76_RS02575 exoribonuclease R sig. 34 93
  Escherichia coli ECOR27 NOLOHH_04485 rnr ribonuclease R sig. 38 71
  Escherichia coli ECRC62 BNILDI_07005 rnr ribonuclease R cofit 38 71
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03863 Ribonuclease R cofit 38 71
  Escherichia coli Nissle 1917 ECOLIN_RS24265 ribonuclease R sig. 38 71
  Escherichia fergusonii Becca EFB2_04356 Ribonuclease R insig. 38 71
  Lysobacter sp. OAE881 ABIE51_RS07475 ribonuclease R cofit 36 89
  Enterobacter asburiae PDN3 EX28DRAFT_3376 ribonuclease R strong 35 91
  Escherichia coli ECOR38 HEPCGN_10450 rnr ribonuclease R cofit 38 71
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 strong 38 73
  Klebsiella pneumoniae MKP103 KDGMDA_11075 ribonuclease R cofit 37 73
  Klebsiella pneumoniae MRSN742743 KFA93_RS21025 rnr;go_function=RNA ribonuclease R strong 37 73
  Cupriavidus basilensis FW507-4G11 RR42_RS13065 ribonuclease R strong 33 88
  Methylophilus sp. DMC18 GFF635 Ribonuclease R insig. 32 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R strong 33 92
  Pseudomonas fluorescens FW300-N2C3 AO356_08610 exoribonuclease R strong 33 92
  Pseudomonas orientalis W4I3 QF045_RS05605 ribonuclease R strong 35 84
  Pseudomonas protegens RBAN4 FABNJH_02985 rnr ribonuclease R insig. 34 91
  Enterobacter sp. TBS_079 MPMX20_00460 Ribonuclease R sig. 35 87
  Pectobacterium carotovorum WPP14 HER17_RS03835 ribonuclease R cofit 33 93
  Pseudomonas simiae WCS417 PS417_02555 exoribonuclease R strong 35 84
  Erwinia amylovora T8 OLJFJH_02470 ribonuclease R strong 34 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R strong 39 70
  Pseudomonas fluorescens SBW25 PFLU_RS02625 ribonuclease R cofit 35 84
  Pseudomonas fluorescens SBW25-INTG PFLU_RS02625 ribonuclease R strong 35 84
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00747 Ribonuclease R cofit 33 92
  Pseudomonas fluorescens GW456-L13 PfGW456L13_144 3'-to-5' exoribonuclease RNase R strong 34 90
  Pseudomonas sp. RS175 PFR28_05130 Ribonuclease R strong 34 91
  Shewanella loihica PV-4 Shew_3289 ribonuclease R (RefSeq) strong 33 92
  Dechlorosoma suillum PS Dsui_3128 ribonuclease R cofit 37 73
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R strong 35 85
  Pseudomonas fluorescens FW300-N2E3 AO353_13200 exoribonuclease R strong 33 91
  Pseudomonas syringae pv. syringae B728a Psyr_0579 RNAse R strong 33 92
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0579 RNAse R strong 33 92
  Pseudomonas stutzeri RCH2 Psest_0691 ribonuclease R strong 34 86
  Pseudomonas sp. DMC3 GFF3229 Ribonuclease R sig. 35 85
  Pseudomonas sp. SVBP6 COO64_RS17955 rnr ribonuclease R insig. 34 89
  Rahnella sp. WP5 EX31_RS08785 ribonuclease R insig. 35 88
  Dickeya dadantii 3937 DDA3937_RS17260 ribonuclease R sig. 33 92
  Vibrio cholerae E7946 ATCC 55056 CSW01_13155 ribonuclease R cofit 33 92
  Pantoea sp. MT58 IAI47_02625 ribonuclease R sig. 34 86
  Dickeya dianthicola ME23 DZA65_RS18405 ribonuclease R insig. 32 93
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS02640 rnr ribonuclease R cofit 34 86
  Pseudomonas segetis P6 ACVTMO_RS20555 rnr ribonuclease R strong 34 88
  Pseudomonas sp. S08-1 OH686_15910 ribonuclease R cofit 33 93
  Dickeya dianthicola 67-19 HGI48_RS17315 ribonuclease R cofit 33 93
  Alteromonas macleodii MIT1002 MIT1002_03606 Ribonuclease R cofit 39 71
  Serratia liquefaciens MT49 IAI46_01660 ribonuclease R strong 33 93
  Pseudomonas putida KT2440 PP_4880 exoribonuclease R strong 35 84
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09655 ribonuclease R cofit 37 78
  Rhodanobacter denitrificans MT42 LRK55_RS00235 ribonuclease R strong 37 78
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00495 ribonuclease R strong 37 78
  Rhodanobacter sp. FW510-T8 OKGIIK_06755 rnr ribonuclease R strong 35 85
  Paraburkholderia graminis OAS925 ABIE53_001940 ribonuclease R strong 32 93
  Pseudomonas sp. BP01 JOY50_RS17320 rnr ribonuclease R insig. 35 84
  Variovorax sp. OAS795 ABID97_RS17200 ribonuclease R strong 37 70
  Kangiella aquimarina DSM 16071 B158DRAFT_1989 ribonuclease R cofit 37 71
  Pseudomonas aeruginosa PA14 IKLFDK_28865 ribonuclease R strong 33 90
  Pseudomonas aeruginosa MRSN321 DY961_RS10465 rnr;go_function=RNA ribonuclease R strong 33 89
  Pseudomonas aeruginosa PUPa3 DQ20_RS51590 rnr;go_function=RNA ribonuclease R strong 33 90
  Variovorax sp. SCN45 GFF399 3'-to-5' exoribonuclease RNase R cofit 36 70
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13230 rnr ribonuclease R strong 33 90
  Erwinia tracheiphila SCR3 LU632_RS21750 rnr ribonuclease R strong 33 90
  Marinobacter adhaerens HP15 HP15_622 exoribonuclease R strong 37 70
  Shewanella sp. ANA-3 Shewana3_0697 RNAse R (RefSeq) strong 35 76
  Burkholderia phytofirmans PsJN BPHYT_RS08455 ribonuclease R sig. 32 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00712 RNAse R strong 33 86
  Paraburkholderia sabiae LMG 24235 QEN71_RS22925 ribonuclease R strong 33 86
  Acinetobacter baumannii LAC-4 RR41_RS02345 ribonuclease R strong 35 76
  Acinetobacter radioresistens SK82 MPMX26_02684 Ribonuclease R cofit 38 65
  Herbaspirillum seropedicae SmR1 HSERO_RS09290 ribonuclease R strong 36 72
  Shewanella oneidensis MR-1 SO3935 vacB ribonuclease R (NCBI ptt file) strong 35 72
  Shewanella amazonensis SB2B Sama_3067 exoribonuclease II (RefSeq) strong 34 76
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08270 ribonuclease R strong 37 72
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4921 3'-to-5' exoribonuclease RNase R cofit 34 70
  Castellaniella sp019104865 MT123 ABCV34_RS06625 ribonuclease R cofit 35 68
  Acidovorax sp. GW101-3H11 Ac3H11_412 3'-to-5' exoribonuclease RNase R strong 34 73
  Desulfovibrio vulgaris Miyazaki F DvMF_0925 ribonuclease R (RefSeq) sig. 37 70
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0669 ribonuclease R no data 32 87
  Desulfovibrio vulgaris Hildenborough JW710 DVU2467 rnr ribonuclease R (TIGR) insig. 36 70
  Fusobacterium nucleatum SB010 HUW76_06085 ribonuclease R cofit 32 68
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04270 ribonuclease R strong 32 70
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10530 ribonuclease R strong 32 68
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05885 ribonuclease R strong 30 83
  Cellulophaga baltica 18 M666_RS05085 ribonuclease R no data 33 69
  Phocaeicola dorei CL03T12C01 ABI39_RS06100 ribonuclease R sig. 33 69
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10970 ribonuclease R strong 33 69
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17355 ribonuclease R strong 32 69
  Bacteroides ovatus ATCC 8483 BACOVA_02736 ribonuclease R strong 31 69
  Bacteroides stercoris CC31F HMPREF1181_RS01550 ribonuclease R insig. 32 69
  Bacteroides thetaiotaomicron VPI-5482 BT3077 ribonuclease R (NCBI ptt file) insig. 31 69
  Klebsiella pneumoniae MKP103 KDGMDA_19680 exoribonuclease II strong 33 58
  Klebsiella pneumoniae MRSN742743 KFA93_RS20170 exoribonuclease II insig. 33 58
  Marinobacter adhaerens HP15 HP15_3552 exoribonuclease R strong 28 72
  Klebsiella michiganensis M5al BWI76_RS11990 exoribonuclease II sig. 33 58
  Enterobacter sp. TBS_079 MPMX20_02487 Exoribonuclease 2 strong 32 58
  Pectobacterium carotovorum WPP14 HER17_RS09430 exoribonuclease II strong 33 58
  Enterobacter asburiae PDN3 EX28DRAFT_0961 exoribonuclease II cofit 32 58
  Pantoea sp. MT58 IAI47_09320 exoribonuclease II sig. 33 57
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS09455 exoribonuclease II cofit 32 64
  Escherichia coli Nissle 1917 ECOLIN_RS07765 exoribonuclease II no data 33 58
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2698 Exoribonuclease II (EC 3.1.13.1) strong 32 58
  Dickeya dadantii 3937 DDA3937_RS12490 exoribonuclease II strong 34 49
  Dickeya dianthicola ME23 DZA65_RS12995 exoribonuclease II sig. 34 49
  Escherichia fergusonii Becca EFB2_02638 Exoribonuclease 2 sig. 33 58
  Dickeya dianthicola 67-19 HGI48_RS12545 exoribonuclease II cofit 34 49
  Serratia liquefaciens MT49 IAI46_13870 exoribonuclease II insig. 31 58
  Escherichia coli ECOR27 NOLOHH_20185 rnb exoribonuclease II insig. 33 58
  Escherichia coli ECOR38 HEPCGN_25680 rnb exoribonuclease II strong 33 58
  Escherichia coli BW25113 b1286 rnb exoribonuclease II (NCBI) strong 33 58
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02395 Exoribonuclease 2 sig. 33 58
  Escherichia coli ECRC62 BNILDI_18335 rnb exoribonuclease II cofit 33 58
  Erwinia amylovora T8 OLJFJH_13600 exoribonuclease II cofit 30 64
  Escherichia coli BL21 ECD_01263 ribonuclease II cofit 33 58
  Escherichia coli ECRC100 OKFHMN_02520 rnb exoribonuclease II cofit 33 58
  Escherichia coli ECRC101 MCAODC_15750 rnb exoribonuclease II strong 33 58
  Escherichia coli ECRC102 NIAGMN_26690 rnb exoribonuclease II sig. 33 58
  Escherichia coli ECRC98 JDDGAC_05065 rnb exoribonuclease II sig. 33 58
  Escherichia coli ECRC99 KEDOAH_26245 rnb exoribonuclease II no data 33 58
  Rahnella sp. WP5 EX31_RS07155 exoribonuclease II insig. 31 63
  Vibrio cholerae E7946 ATCC 55056 CSW01_18190 exoribonuclease 2 insig. 29 62
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23355 exoribonuclease II no data 30 58
  Erwinia tracheiphila SCR3 LU632_RS12255 exoribonuclease II no data 30 58
  Synechocystis sp000284455 PCC 6803 SGL_RS05500 ribonuclease R strong 24 70
  Synechococcus elongatus PCC 7942 Synpcc7942_1911 zam Cold shock protein strong 24 70
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16070 RNB domain-containing ribonuclease insig. 30 58
  Rhodanobacter sp. FW510-T8 OKGIIK_02040 Ribonuclease II insig. 30 49
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1618 Exoribonuclease R insig. 28 52
  Desulfovibrio vulgaris Hildenborough JW710 DVU3207 RNB-like family protein (TIGR) strong 27 42
  Variovorax sp. SCN45 GFF7962 3'-to-5' exoribonuclease RNase R no data 37 16
  Rhodanobacter denitrificans MT42 LRK55_RS12180 RNB domain-containing ribonuclease insig. 31 41
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12440 RNB domain-containing ribonuclease insig. 31 41
  Desulfovibrio vulgaris Miyazaki F DvMF_1943 ribonuclease II (RefSeq) no data 24 39
  Synechococcus elongatus PCC 7942 Synpcc7942_1124 rnb Exoribonuclease II strong 26 46
  Synechocystis sp000284455 PCC 6803 SGL_RS05100 ribonuclease R no data 24 49
  Synechococcus elongatus PCC 7942 Synpcc7942_1546 putative ribonuclease II strong 28 38
  Dechlorosoma suillum PS Dsui_0446 exoribonuclease R no data 24 58
  Methylophilus sp. DMC18 GFF620 Exoribonuclease 2 cofit 26 26
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS05955 RNB domain-containing ribonuclease no data 24 44
  Ralstonia solanacearum UW163 UW163_RS07670 RNB domain-containing ribonuclease no data 24 44
  Castellaniella sp019104865 MT123 ABCV34_RS10695 RNB domain-containing ribonuclease no data 28 27
  Variovorax sp. SCN45 GFF4454 Exoribonuclease II (EC 3.1.13.1) strong 31 11