Homologs of trmA from Escherichia coli BW25113

trmA: tRNA (uracil-5-)-methyltransferase (NCBI)
KEGG: tRNA (uracil-5-)-methyltransferase

217 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli BL21 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase cofit 100 100
o Escherichia coli ECOR27 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 100 100
o Escherichia coli ECRC62 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 100 100
  Escherichia coli BW25113 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) sig. 100 100
o Escherichia coli ECRC100 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 100 100
o Escherichia coli ECRC102 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 100 100
o Escherichia coli ECRC98 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 100 100
o Escherichia coli ECRC99 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA no data 100 100
o Escherichia coli ECRC101 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 99 100
o Escherichia fergusonii Becca EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 99 100
o Escherichia coli Nissle 1917 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 99 100
o Escherichia coli ECOR38 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) cofit 94 100
o Klebsiella pneumoniae MKP103 KDGMDA_09400 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 93 100
o Klebsiella pneumoniae MRSN742743 GJGHJB_04886 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 93 100
o Enterobacter sp. TBS_079 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 92 100
o Klebsiella michiganensis M5al BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 91 100
o Enterobacter asburiae PDN3 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase insig. 91 100
o Pantoea sp. MT58 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 82 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS00945 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 82 100
o Serratia liquefaciens MT49 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 79 100
o Dickeya dadantii 3937 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 81 100
o Dickeya dianthicola ME23 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 80 100
o Dickeya dianthicola 67-19 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 80 100
o Pectobacterium carotovorum WPP14 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 79 100
o Erwinia amylovora T8 OLJFJH_06160 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 78 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13145 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 76 100
o Erwinia tracheiphila SCR3 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 76 100
o Rahnella sp. WP5 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 76 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 65 98
o Shewanella loihica PV-4 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 60 99
o Shewanella oneidensis MR-1 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) sig. 62 96
o Shewanella sp. ANA-3 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) insig. 62 96
o Shewanella amazonensis SB2B Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) sig. 60 99
o Alteromonas macleodii MIT1002 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase insig. 59 98
o Acinetobacter baumannii LAC-4 RR41_RS11900 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 51 97
o Acinetobacter radioresistens SK82 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 51 97
o Pseudomonas stutzeri RCH2 Psest_3451 tRNA (uracil-5-)-methyltransferase sig. 52 98
o Pseudomonas segetis P6 ACVTMO_RS19815 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 50 100
o Pseudomonas orientalis W4I3 QF045_RS26680 tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 50 98
o Pseudomonas putida KT2440 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase strong 51 97
o Pseudomonas sp. RS175 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 49 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) strong 49 98
o Pseudomonas simiae WCS417 PS417_24385 tRNA (uracil-5-)-methyltransferase sig. 49 98
o Pseudomonas sp. BP01 JOY50_RS27500 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 50 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05030 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 49 98
o Pseudomonas fluorescens SBW25 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA cofit 48 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 48 98
o Pseudomonas fluorescens FW300-N2E3 AO353_13905 tRNA (uracil-5-)-methyltransferase sig. 48 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) sig. 48 98
o Pseudomonas sp. S08-1 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase cofit 50 97
o Pseudomonas sp. SVBP6 COO64_RS02860 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 49 97
o Pseudomonas fluorescens FW300-N2C3 AO356_15600 tRNA (uracil-5-)-methyltransferase insig. 48 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) insig. 48 98
o Pseudomonas sp. DMC3 GFF3938 tRNA/tmRNA (uracil-C(5))-methyltransferase insig. 48 98
o Pseudomonas protegens RBAN4 FABNJH_27150 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA insig. 48 97
o Pseudomonas aeruginosa MRSN321 PFGADD_04944 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 51 99
o Pseudomonas aeruginosa PUPa3 NPBIFN_05021 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA sig. 51 99
o Pseudomonas syringae pv. syringae B728a Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 50 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4287 tRNA (uracil-5-)-methyltransferase insig. 50 97
o Pseudomonas aeruginosa PA14 IKLFDK_30015 tRNA (uridine(54)-C5)-methyltransferase TrmA strong 51 99
o Dechlorosoma suillum PS Dsui_2239 tRNA (uracil-5-)-methyltransferase insig. 46 97
  Enterobacter sp. TBS_079 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 36 48
  Enterobacter asburiae PDN3 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA insig. 35 48
  Pseudomonas sp. DMC3 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 25 99
  Serratia liquefaciens MT49 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 96
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 29 70
  Pseudomonas stutzeri RCH2 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA insig. 27 96
  Kangiella aquimarina DSM 16071 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA insig. 30 54
  Klebsiella pneumoniae MKP103 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 48
  Klebsiella pneumoniae MRSN742743 GJGHJB_00975 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 34 48
  Pseudomonas protegens RBAN4 FABNJH_22980 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 99
  Shewanella loihica PV-4 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 25 97
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 49
  Erwinia tracheiphila SCR3 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 49
  Pseudomonas simiae WCS417 PS417_20155 23S rRNA methyltransferase insig. 28 70
  Escherichia coli ECOR27 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 48
  Pseudomonas aeruginosa MRSN321 PFGADD_04194 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 28 99
  Pseudomonas aeruginosa PA14 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 28 99
  Pseudomonas aeruginosa PUPa3 NPBIFN_04253 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 28 99
  Pseudomonas fluorescens FW300-N2C3 AO356_19055 23S rRNA methyltransferase insig. 30 61
  Vibrio cholerae E7946 ATCC 55056 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 49
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 48
  Escherichia coli BW25113 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) insig. 33 48
  Pseudomonas sp. RS175 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 31 53
  Escherichia coli ECRC62 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 33 48
  Pseudomonas fluorescens SBW25 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 31 51
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 31 51
  Escherichia coli Nissle 1917 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 48
  Marinobacter adhaerens HP15 HP15_790 23S rRNA 5-methyluridine methyltransferase insig. 33 47
  Escherichia coli BL21 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent insig. 32 48
  Escherichia coli ECOR38 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 48
  Erwinia amylovora T8 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 91
  Klebsiella michiganensis M5al BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase sig. 33 48
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 33 51
  Escherichia fergusonii Becca EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 33 48
  Shewanella oneidensis MR-1 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) strong 31 49
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 34 48
  Escherichia coli ECRC100 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 32 48
  Escherichia coli ECRC101 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 48
  Escherichia coli ECRC102 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 48
  Escherichia coli ECRC98 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 48
  Escherichia coli ECRC99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no data 32 48
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04385 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 32 48
  Pseudomonas sp. S08-1 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA cofit 27 99
  Pectobacterium carotovorum WPP14 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 66
  Pseudomonas syringae pv. syringae B728a Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 30 54
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3696 23S rRNA m(5)U-1939 methyltransferase insig. 30 54
  Shewanella amazonensis SB2B Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) sig. 31 50
  Pantoea sp. MT58 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 48
  Shewanella sp. ANA-3 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) cofit 30 49
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 29 51
  Rahnella sp. WP5 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 47
  Lysobacter sp. OAE881 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 31 51
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 52
  Pseudomonas sp. SVBP6 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 51
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 strong 27 70
  Fusobacterium nucleatum SB010 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 25 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 30 47
  Rhodanobacter denitrificans MT42 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 47
  Pseudomonas segetis P6 ACVTMO_RS08190 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 52
  Vibrio cholerae E7946 ATCC 55056 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 32 49
  Methylophilus sp. DMC18 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 24 95
  Shewanella amazonensis SB2B Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 32 49
  Rhodanobacter sp. FW510-T8 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 47
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA insig. 28 51
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 56
  Acinetobacter radioresistens SK82 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 48
  Acinetobacter baumannii LAC-4 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 32 47
  Alteromonas macleodii MIT1002 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 97
  Dickeya dadantii 3937 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 31 51
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 49
  Dickeya dianthicola 67-19 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 51
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 47
  Shewanella oneidensis MR-1 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) insig. 29 49
  Cellulophaga baltica 18 M666_RS10255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 55
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 sig. 32 58
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 28 53
  Phocaeicola dorei CL03T12C01 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 48
  Dickeya dianthicola ME23 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 89
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA insig. 26 56
  Paraburkholderia sabiae LMG 24235 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 25 95
  Pseudomonas sp. BP01 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 30 51
  Pseudomonas putida KT2440 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD strong 30 51
  Synechococcus elongatus PCC 7942 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA cofit 33 48
  Synechocystis sp000284455 PCC 6803 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 28 54
  Bacteroides ovatus ATCC 8483 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA cofit 28 51
  Escherichia coli ECOR27 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Castellaniella sp019104865 MT123 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 26 95
  Escherichia coli ECRC62 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Pseudomonas fluorescens FW300-N2E3 AO353_02715 23S rRNA methyltransferase sig. 29 58
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD cofit 27 55
  Escherichia fergusonii Becca EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Escherichia coli ECOR38 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Escherichia coli Nissle 1917 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Shewanella loihica PV-4 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 29 48
  Shewanella sp. ANA-3 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) insig. 28 49
  Escherichia coli BL21 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent insig. 30 49
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Escherichia coli BW25113 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) sig. 30 49
  Bacteroides thetaiotaomicron VPI-5482 BT0643 RNA methyltransferase (NCBI ptt file) sig. 27 51
  Escherichia coli ECRC100 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 30 49
  Escherichia coli ECRC101 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 30 49
  Escherichia coli ECRC102 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 30 49
  Escherichia coli ECRC99 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC no data 30 49
  Klebsiella pneumoniae MKP103 KDGMDA_17730 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 49
  Klebsiella pneumoniae MRSN742743 GJGHJB_03356 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 49
  Serratia liquefaciens MT49 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 49
  Escherichia coli ECRC98 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 49
  Desulfovibrio vulgaris Miyazaki F DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) insig. 29 49
  Enterobacter asburiae PDN3 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB insig. 29 41
  Bacteroides stercoris CC31F HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 26 52
  Klebsiella michiganensis M5al BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase insig. 30 49
  Dechlorosoma suillum PS Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA cofit 29 51
  Agrobacterium fabrum C58 Atu0735 RNA methyltransferase insig. 25 98
  Rahnella sp. WP5 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 49
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 26 53
  Erwinia tracheiphila SCR3 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 53
  Pantoea sp. MT58 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 49
  Variovorax sp. SCN45 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 26 95
  Pectobacterium carotovorum WPP14 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 49
  Desulfovibrio vulgaris Hildenborough JW710 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) insig. 29 42
  Burkholderia phytofirmans PsJN BPHYT_RS09125 23S rRNA methyltransferase insig. 28 52
  Caulobacter crescentus NA1000 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein sig. 26 47
  Caulobacter crescentus NA1000 Δfur CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein cofit 26 47
  Enterobacter sp. TBS_079 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 28 41
  Paraburkholderia graminis OAS925 ABIE53_002060 tRNA/tmRNA/rRNA uracil-C5-methylase (TrmA/RlmC/RlmD family) sig. 28 52
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS13105 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC cofit 27 49
  Ralstonia sp. UNC404CL21Col ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 24 95
  Dickeya dadantii 3937 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 29 41
  Cupriavidus basilensis FW507-4G11 RR42_RS13170 23S rRNA methyltransferase insig. 29 47
  Ralstonia solanacearum GMI1000 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD sig. 27 51
  Ralstonia solanacearum PSI07 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 27 51
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) insig. 26 58
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase insig. 24 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 51
  Ralstonia solanacearum UW163 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 25 51
  Bifidobacterium breve UCC2003 BBR_RS16615 class I SAM-dependent RNA methyltransferase strong 25 52
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08425 class I SAM-dependent RNA methyltransferase cofit 29 41
  Rhizobium sp. OAE497 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase insig. 27 69
  Dickeya dianthicola 67-19 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 26 41
  Dickeya dianthicola ME23 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC insig. 27 41
  Herbaspirillum seropedicae SmR1 HSERO_RS14825 23S rRNA methyltransferase insig. 26 53
  Mycobacterium tuberculosis H37Rv Rv2689c Conserved alanine and valine and glycine rich protein insig. 27 41
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) insig. 22 93
  Rhodopseudomonas palustris CGA009 TX73_004885 methyltransferase insig. 28 47
  Magnetospirillum magneticum AMB-1 AMB_RS01660 class I SAM-dependent RNA methyltransferase insig. 30 47
  Phaeobacter inhibens DSM 17395 PGA1_c34810 putative RNA methyltransferase insig. 24 47
  Xanthobacter sp. DMC5 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 28 39
  Dinoroseobacter shibae DFL-12 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) insig. 35 19
  Sinorhizobium meliloti 1021 SMc00974 RNA methyltransferase insig. 25 47
  Sphingobium sp. HT1-2 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) cofit 25 41
  Azospirillum sp. SherDot2 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD insig. 29 41
  Bosea sp. OAE506 ABIE41_RS22255 RNA methyltransferase insig. 23 57
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase insig. 26 41
  Azospirillum brasilense Sp245 AZOBR_RS01195 RNA methyltransferase insig. 31 18