Conservation of cofitness between Psyr_4197 and Psyr_1974 in Pseudomonas syringae pv. syringae B728a

114 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4197 DNA replication and repair protein RecN 1.0 Psyr_1974 Excinuclease ABC subunit B 0.52 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4197 DNA replication and repair protein RecN 1.00 Psyr_1974 Excinuclease ABC subunit B 0.44 23
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_1178 DNA repair protein RecN 0.95 Pf1N1B4_26 Excinuclease ABC subunit B 0.40 5
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_5106 DNA repair protein RecN 0.94 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas orientalis W4I3 0.88 QF045_RS26325 DNA repair protein RecN 0.96 QF045_RS20805 excinuclease ABC subunit UvrB low > 93
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_05660 DNA repair protein RecN 0.95 AO353_20545 excinuclease ABC subunit B 0.62 5
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3370 DNA repair protein RecN 0.96 Pf6N2E2_52 Excinuclease ABC subunit B 0.69 5
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS25910 DNA repair protein RecN 0.96 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas lactucae CFBP13502 0.88 GEMAOFIL_04964 DNA repair protein RecN 0.95 GEMAOFIL_03964 UvrABC system protein B low > 96
Pseudomonas fluorescens SBW25 0.88 PFLU_RS25910 DNA repair protein RecN 0.96 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas simiae WCS417 0.88 PS417_24070 recombination and repair protein 0.96 PS417_18685 excinuclease ABC subunit B 0.62 2
Pseudomonas sp. DMC3 0.87 GFF4971 DNA repair protein RecN 0.95 GFF774 UvrABC system protein B low > 89
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_07510 DNA repair protein RecN 0.96 AO356_21335 excinuclease ABC subunit B 0.77 6
Pseudomonas sp. RS175 0.85 PFR28_00071 DNA repair protein RecN 0.95 PFR28_02837 UvrABC system protein B low > 88
Pseudomonas sp. SVBP6 0.84 COO64_RS15270 recN DNA repair protein RecN 0.92 COO64_RS05730 uvrB excinuclease ABC subunit UvrB low > 93
Pseudomonas segetis P6 0.82 ACVTMO_RS05855 recN DNA repair protein RecN 0.92 ACVTMO_RS15315 uvrB excinuclease ABC subunit UvrB low > 75
Pseudomonas sp. S08-1 0.81 OH686_17050 DNA repair protein RecN 0.88 OH686_04580 excinuclease ABC subunit B low > 80
Pseudomonas putida KT2440 0.80 PP_4729 factor used in recombination and DNA repair 0.91 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas sp. BP01 0.80 JOY50_RS26735 recN DNA repair protein RecN 0.91 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB low > 84
Pseudomonas aeruginosa PUPa3 0.79 DQ20_RS52465 recN;go_function=ATP DNA repair protein RecN 0.87 DQ20_RS34340 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB 0.35 19
Pseudomonas aeruginosa MRSN321 0.79 DY961_RS09575 recN;go_function=ATP DNA repair protein RecN 0.87 DY961_RS01215 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB low > 100
Pseudomonas aeruginosa PA14 0.79 IKLFDK_29775 DNA repair protein RecN 0.87 IKLFDK_15985 excinuclease ABC subunit UvrB 0.45 16
Pseudomonas stutzeri RCH2 0.77 Psest_0962 DNA repair protein RecN 0.90 Psest_1296 excinuclease ABC, B subunit 0.72 5
Marinobacter adhaerens HP15 0.50 HP15_3084 DNA repair protein RecN 0.76 HP15_1372 excinuclease ABC subunit B 0.88 2
Shewanella amazonensis SB2B 0.44 Sama_1026 recombination and repair protein (RefSeq) 0.70 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.55 15
Shewanella oneidensis MR-1 0.43 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.71 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.39 18
Serratia liquefaciens MT49 0.43 IAI46_19635 DNA repair protein RecN 0.74 IAI46_06550 excinuclease ABC subunit B low > 87
Shewanella sp. ANA-3 0.43 Shewana3_1104 recombination and repair protein (RefSeq) 0.71 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_04395 DNA repair protein RecN 0.73 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Shewanella loihica PV-4 0.43 Shew_1196 recombination and repair protein (RefSeq) 0.71 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.63 5
Dickeya dadantii 3937 0.42 DDA3937_RS04325 DNA repair protein RecN 0.72 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Pantoea sp. MT58 0.41 IAI47_04810 DNA repair protein RecN 0.71 IAI47_13505 excinuclease ABC subunit B low > 76
Pantoea agglomerans CFBP13505 P0401 0.41 PagCFBP13505_RS14700 DNA repair protein RecN 0.71 PagCFBP13505_RS03805 excinuclease ABC subunit B low > 74
Rahnella sp. WP5 0.41 EX31_RS21760 DNA repair protein RecN 0.72 EX31_RS23720 excinuclease ABC subunit B low > 89
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0601 DNA replication and repair protein RecN 0.73 B158DRAFT_2341 Excinuclease ABC subunit B 0.61 11
Klebsiella michiganensis M5al 0.41 BWI76_RS21560 DNA repair protein RecN 0.71 BWI76_RS08785 excinuclease ABC subunit B low > 92
Dickeya dianthicola ME23 0.41 DZA65_RS04235 DNA repair protein RecN 0.72 DZA65_RS08990 excinuclease ABC subunit B low > 75
Dickeya dianthicola 67-19 0.40 HGI48_RS04320 DNA repair protein RecN 0.72 HGI48_RS08695 excinuclease ABC subunit B low > 71
Klebsiella pneumoniae MKP103 0.40 KDGMDA_02250 DNA repair protein RecN 0.71 KDGMDA_17050 excinuclease ABC subunit UvrB low > 95
Escherichia coli ECRC100 0.40 OKFHMN_21145 recN DNA repair protein RecN 0.71 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB low > 79
Escherichia coli ECRC99 0.40 KEDOAH_07075 recN DNA repair protein RecN 0.71 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS17420 DNA repair protein RecN 0.73 HER17_RS13420 excinuclease ABC subunit B low > 75
Escherichia coli ECRC102 0.40 NIAGMN_18915 recN DNA repair protein RecN 0.71 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB low > 80
Escherichia coli ECRC101 0.40 MCAODC_11670 recN DNA repair protein RecN 0.71 MCAODC_25595 uvrB excinuclease ABC subunit UvrB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF4162 DNA repair protein RecN 0.70 GFF675 Excinuclease ABC subunit B 0.45 71
Escherichia coli BL21 0.40 ECD_02504 recombination and repair protein 0.71 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component low > 61
Escherichia coli BW25113 0.40 b2616 recN recombination and repair protein (NCBI) 0.71 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.40 19
Escherichia coli ECRC62 0.40 BNILDI_11620 recN DNA repair protein RecN 0.71 BNILDI_21020 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECRC98 0.40 JDDGAC_24810 recN DNA repair protein RecN 0.71 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia fergusonii Becca 0.40 EFB2_01277 DNA repair protein RecN 0.70 EFB2_03326 UvrABC system protein B low > 86
Alteromonas macleodii MIT1002 0.40 MIT1002_01443 Recombination protein N 0.69 MIT1002_01261 Excinuclease ABC subunit B low > 70
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01091 DNA repair protein RecN 0.71 OHPLBJKB_02934 UvrABC system protein B low > 74
Escherichia coli ECOR27 0.40 NOLOHH_12815 recN DNA repair protein RecN 0.71 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 76
Escherichia coli ECOR38 0.40 HEPCGN_20265 recN DNA repair protein RecN 0.70 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 88
Erwinia amylovora T8 0.40 OLJFJH_10175 DNA repair protein RecN 0.71 OLJFJH_16735 excinuclease ABC subunit UvrB low > 58
Escherichia coli Nissle 1917 0.40 ECOLIN_RS14775 DNA repair protein RecN 0.71 ECOLIN_RS04150 excinuclease ABC subunit UvrB low > 55
Enterobacter asburiae PDN3 0.39 EX28DRAFT_2719 DNA repair protein RecN 0.71 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Enterobacter sp. TBS_079 0.39 MPMX20_03486 DNA repair protein RecN 0.71 MPMX20_01408 UvrABC system protein B 0.17 74
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.3431.1 DNA repair protein RecN 0.72 Xcc-8004.2034.1 Excinuclease ABC subunit B low > 74
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_26925 recN DNA repair protein RecN 0.72 IJEDHG_19590 uvrB excinuclease ABC subunit UvrB low > 61
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_07340 recN DNA repair protein RecN 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB low > 53
Erwinia tracheiphila SCR3 0.38 LU632_RS16985 recN DNA repair protein RecN 0.72 LU632_RS09160 uvrB excinuclease ABC subunit B low > 73
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.66 HSERO_RS15840 excinuclease ABC subunit B 0.27 68
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS05665 DNA repair protein RecN 0.70 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.81 6
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS17960 DNA repair protein RecN 0.70 LRK54_RS14235 excinuclease ABC subunit UvrB low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS17815 DNA repair protein RecN 0.70 LRK55_RS13955 excinuclease ABC subunit UvrB low > 63
Lysobacter sp. OAE881 0.37 ABIE51_RS11655 DNA repair protein RecN 0.70 ABIE51_RS15310 excinuclease ABC subunit UvrB 0.62 11
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS11400 DNA repair protein RecN 0.69 LRK53_RS14375 excinuclease ABC subunit UvrB low > 59
Methylophilus sp. DMC18 0.37 GFF306 DNA repair protein RecN 0.66 GFF1123 UvrABC system protein B low > 43
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.69 Dsui_2434 excinuclease ABC, B subunit 0.68 14
Ralstonia solanacearum PSI07 0.35 RPSI07_RS11890 DNA repair protein RecN 0.68 RPSI07_RS19240 excinuclease ABC subunit UvrB low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.67 RS_RS05005 UvrABC system protein B low > 80
Ralstonia solanacearum UW163 0.35 UW163_RS08210 DNA repair protein RecN 0.68 UW163_RS11690 excinuclease ABC subunit UvrB — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS05415 DNA repair protein RecN 0.68 RALBFv3_RS14225 excinuclease ABC subunit UvrB low > 76
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3460 DNA repair protein RecN 0.65 Ac3H11_4114 Excinuclease ABC subunit B low > 79
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01065 DNA repair protein RecN 0.69 ABZR87_RS09940 excinuclease ABC subunit UvrB low > 80
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS26535 DNA repair protein RecN 0.66 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS05910 DNA repair protein 0.69 RR42_RS05995 excinuclease ABC subunit B 0.70 2
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.66 ABCV34_RS05110 excinuclease ABC subunit UvrB low > 48
Variovorax sp. SCN45 0.33 GFF2357 DNA repair protein RecN 0.65 GFF945 Excinuclease ABC subunit B 0.71 18
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04692 DNA replication and repair protein RecN 0.67 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Paraburkholderia graminis OAS925 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.67 ABIE53_001645 excinuclease ABC subunit B 0.39 5
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.65 GFF4962 Excinuclease ABC subunit B low > 90
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.67 BPHYT_RS06905 excinuclease ABC subunit B low > 109
Acinetobacter baumannii LAC-4 0.31 RR41_RS17380 DNA repair protein RecN 0.70 RR41_RS04945 excinuclease ABC subunit UvrB low > 55
Acinetobacter radioresistens SK82 0.31 MPMX26_00239 DNA repair protein RecN 0.69 MPMX26_02142 UvrABC system protein B 0.54 2
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS10900 DNA repair protein RecN 0.52 HMPREF1181_RS15225 excinuclease ABC subunit UvrB low > 56
Bacteroides ovatus ATCC 8483 0.29 BACOVA_00200 DNA repair protein RecN 0.52 BACOVA_03714 excinuclease ABC, B subunit low > 96
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.60 AMB_RS19255 excinuclease ABC subunit UvrB — —
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS02000 DNA repair protein RecN 0.56 HMPREF1078_RS15855 excinuclease ABC subunit UvrB low > 61
Azospirillum sp. SherDot2 0.28 MPMX19_01601 DNA repair protein RecN 0.60 MPMX19_01038 UvrABC system protein B 0.58 16
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS14500 DNA repair protein RecN 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB low > 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS06580 DNA repair protein RecN 0.55 ABZR88_RS18110 excinuclease ABC subunit UvrB low > 71
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS18225 DNA repair protein RecN 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB low > 67
Azospirillum brasilense Sp245 0.27 AZOBR_RS12395 DNA repair protein RecN 0.62 AZOBR_RS16420 excinuclease ABC subunit B — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.55 Echvi_1215 excinuclease ABC, B subunit 0.61 17
Sphingobium sp. HT1-2 0.27 GFF2340 DNA repair protein RecN 0.58 GFF700 Excinuclease ABC subunit B low > 95
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_13235 DNA repair protein RecN 0.54 CA264_19110 excinuclease ABC subunit B low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS14855 DNA repair protein RecN 0.56 CA265_RS19430 excinuclease ABC subunit B 0.83 3
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_1026 DNA repair protein RecN 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.31 23
Phaeobacter inhibens DSM 17395 0.26 PGA1_c09720 DNA repair protein RecN 0.59 PGA1_c26160 uvrABC system protein B 0.50 4
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.59 Rru_A1133 Excinuclease ABC, B subunit (NCBI) — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_2413 DNA repair protein RecN (RefSeq) 0.60 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.57 1
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.55 HUW76_02625 excinuclease ABC subunit UvrB low > 35
Cellulophaga baltica 18 0.23 M666_RS17655 DNA repair protein RecN 0.55 M666_RS19015 excinuclease ABC subunit UvrB 0.52 25
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.60 CCNA_03076 excinuclease ABC subunit B low > 67
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.60 CCNA_03076 excinuclease ABC subunit B 0.73 11
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_1779 recN DNA repair protein RecN 0.59 Synpcc7942_0563 uvrB excinuclease ABC subunit B low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.59 A4249_RS00555 excinuclease ABC subunit UvrB low > 48
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU2463 recN DNA repair protein RecN (TIGR) 0.59 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) 0.34 29
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.54 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB low > 58
Synechocystis sp000284455 PCC 6803 0.19 SGL_RS11690 DNA repair protein RecN 0.55 SGL_RS14040 excinuclease ABC subunit UvrB low > 52
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_0923 SMC domain protein (RefSeq) 0.59 DvMF_0454 excinuclease ABC subunit B (RefSeq) low > 51
Bifidobacterium breve UCC2003 0.14 BBR_RS14030 DNA repair protein RecN 0.52 BBR_RS14285 excinuclease ABC subunit UvrB 0.60 12

Not shown: 5 genomes with orthologs for Psyr_4197 only; 3 genomes with orthologs for Psyr_1974 only