Conservation of cofitness between PP_1988 and PP_4680 in Pseudomonas putida KT2440

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1988 3-isopropylmalate dehydrogenase 1.0 PP_4680 acetohydroxybutanoate synthase / acetolactate synthase 0.94 3
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.89 Pf6N2E2_5175 Acetolactate synthase large subunit (EC 2.2.1.6) 0.92 12
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.89 AO356_16170 acetolactate synthase 3 catalytic subunit 0.95 10
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 PfGW456L13_1538 Acetolactate synthase large subunit (EC 2.2.1.6) 0.95 8
Pseudomonas simiae WCS417 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.89 PS417_23810 acetolactate synthase 3 catalytic subunit 0.92 7
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.89 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas fluorescens SBW25 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.89 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas sp. RS175 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.90 PFR28_03699 Acetolactate synthase isozyme 3 large subunit 0.68 16
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 Pf1N1B4_2878 Acetolactate synthase large subunit (EC 2.2.1.6) 0.83 24
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.89 AO353_14495 acetolactate synthase 3 catalytic subunit 0.86 30
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.90 Psyr_0846 acetolactate synthase, large subunit 0.89 20
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.90 Psyr_0846 acetolactate synthase, large subunit 0.91 11
Pseudomonas stutzeri RCH2 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.88 Psest_1036 acetolactate synthase, large subunit, biosynthetic type
Pseudomonas sp. S08-1 0.87 OH686_04470 3-isopropylmalate dehydrogenase 0.88 OH686_08130 acetolactate synthase, large subunit, biosynthetic type 0.96 1
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.35 Xcc-8004.1059.1 Acetolactate synthase large subunit (EC 2.2.1.6) 0.85 21
Acinetobacter radioresistens SK82 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 0.70 MPMX26_00472 Acetolactate synthase isozyme 3 large subunit 0.99 4
Marinobacter adhaerens HP15 0.73 HP15_1832 3-isopropylmalate dehydrogenase 0.75 HP15_531 acetolactate synthase, large subunit, biosynthetic type 0.83 16
Dechlorosoma suillum PS 0.68 Dsui_3198 3-isopropylmalate dehydrogenase 0.60 Dsui_3529 acetolactate synthase, large subunit, biosynthetic type
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.62 ABZR87_RS14955 acetolactate synthase 3 catalytic subunit 0.66 45
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.61 H281DRAFT_04551 acetolactate synthase, large subunit
Paraburkholderia graminis OAS925 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.59 ABIE53_001574 acetolactate synthase-1/2/3 large subunit
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.59 HSERO_RS08650 acetolactate synthase 0.95 4
Variovorax sp. OAS795 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.59 ABID97_RS14885 acetolactate synthase 3 catalytic subunit
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.61 RR42_RS05435 acetolactate synthase 3 catalytic subunit
Ralstonia solanacearum GMI1000 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.62 RS_RS10420 acetolactate synthase 3 large subunit
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.62 RALBFv3_RS03050 acetolactate synthase 3 large subunit
Variovorax sp. SCN45 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.59 GFF1158 Acetolactate synthase large subunit (EC 2.2.1.6)
Ralstonia solanacearum UW163 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase 0.62 UW163_RS10675 acetolactate synthase 3 large subunit
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.59 Ac3H11_525 Acetolactate synthase large subunit (EC 2.2.1.6) 0.74 44
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.60 BPHYT_RS06545 acetolactate synthase 0.95 4
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.62 RPSI07_RS14255 acetolactate synthase, large subunit, biosynthetic type
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.59 QEN71_RS24225 acetolactate synthase 3 catalytic subunit 0.81 10
Castellaniella sp019104865 MT123 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.59 ABCV34_RS01210 acetolactate synthase 3 catalytic subunit 0.56 8
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.61 GFF4276 Acetolactate synthase large subunit (EC 2.2.1.6)
Desulfovibrio vulgaris Miyazaki F 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.51 DvMF_0153 acetolactate synthase, large subunit, biosynthetic type (RefSeq) 0.90 23
Phaeobacter inhibens DSM 17395 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.46 PGA1_c20210 acetolactate synthase isozyme 3 large subunit 0.91 7
Dinoroseobacter shibae DFL-12 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.49 Dshi_1779 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Rhizobium sp. OAE497 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.49 ABIE40_RS11495 acetolactate synthase 3 large subunit 0.89 52
Sinorhizobium meliloti 1021 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.49 SMc01431 acetolactate synthase 3 catalytic subunit 0.97 9
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.45 Synpcc7942_0139 ilvB acetolactate synthase 3 catalytic subunit
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.50 DVU1376 ilvB-2 acetolactate synthase, large subunit, biosynthetic type (TIGR) 0.93 7
Azospirillum sp. SherDot2 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase 0.51 MPMX19_01776 Acetolactate synthase isozyme 3 large subunit
Agrobacterium fabrum C58 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.49 Atu2036 acetolactate synthase III, large subunit 0.88 35
Magnetospirillum magneticum AMB-1 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase 0.48 AMB_RS17740 acetolactate synthase 3 large subunit
Rhodospirillum rubrum S1H 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.49 Rru_A0467 Acetolactate synthase, large subunit, biosynthetic type (NCBI) 0.87 19
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.48 Ga0059261_0068 acetolactate synthase, large subunit (EC 2.2.1.6) 0.97 3
Azospirillum brasilense Sp245 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.50 AZOBR_RS06560 acetolactate synthase low > 97
Enterobacter sp. TBS_079 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.66 MPMX20_00771 Acetolactate synthase isozyme 3 large subunit low > 85
Escherichia coli Nissle 1917 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.67 ECOLIN_RS00415 acetolactate synthase 3 large subunit low > 52
Escherichia coli ECRC101 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.67 OKFHMN_10700 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC102 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.67 NIAGMN_08550 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC98 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.67 JDDGAC_14295 ilvI acetolactate synthase 3 large subunit
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.63 GFF161 Acetolactate synthase large subunit (EC 2.2.1.6) low > 78
Escherichia coli ECRC99 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.67 KEDOAH_17455 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC101 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.67 MCAODC_01215 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECOR38 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.67 HEPCGN_08680 ilvI acetolactate synthase 3 large subunit low > 85
Escherichia fergusonii Becca 0.54 EFB2_03972 3-isopropylmalate dehydrogenase 0.67 EFB2_03969 Acetolactate synthase isozyme 3 large subunit low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.67 OHPLBJKB_03581 Acetolactate synthase isozyme 3 large subunit low > 73
Escherichia coli ECOR27 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.67 NOLOHH_03045 ilvI acetolactate synthase 3 large subunit low > 57
Escherichia coli BL21 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.67 ECD_00079 acetolactate synthase 3 large subunit low > 60
Escherichia coli ECRC62 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase 0.67 BNILDI_08565 ilvI acetolactate synthase 3 large subunit
Escherichia coli BW25113 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.67 b0077 ilvI acetolactate synthase III large subunit (NCBI) low > 76
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.66 EX28DRAFT_3673 acetolactate synthase, large subunit (EC 2.2.1.6) low > 76
Serratia liquefaciens MT49 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.69 IAI46_03375 acetolactate synthase 3 large subunit low > 86
Shewanella loihica PV-4 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.67 Shew_1776 acetolactate synthase 3 catalytic subunit (RefSeq) low > 60
Klebsiella michiganensis M5al 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.65 BWI76_RS04695 acetolactate synthase 3 large subunit low > 92
Rhodopseudomonas palustris CGA009 0.53 TX73_001175 3-isopropylmalate dehydrogenase 0.48 TX73_010465 acetolactate synthase 3 large subunit
Rahnella sp. WP5 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.69 EX31_RS03665 acetolactate synthase 3 large subunit low > 89
Bosea sp. OAE506 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.51 ABIE41_RS12890 acetolactate synthase 3 large subunit
Shewanella sp. ANA-3 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.69 Shewana3_2269 acetolactate synthase 3 catalytic subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.70 SO2279 ilvI acetolactate synthase III, large subunit (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_12600 3-isopropylmalate dehydrogenase 0.66 CSW01_12565 acetolactate synthase 3 large subunit low > 62
Shewanella amazonensis SB2B 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.70 Sama_2018 acetolactate synthase 3 catalytic subunit (RefSeq) low > 62
Dickeya dianthicola ME23 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.68 DZA65_RS19185 acetolactate synthase 3 large subunit low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.68 HGI48_RS18040 acetolactate synthase 3 large subunit low > 71
Dickeya dadantii 3937 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.69 DDA3937_RS18105 acetolactate synthase 3 large subunit low > 74
Pectobacterium carotovorum WPP14 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.69 HER17_RS03095 acetolactate synthase 3 large subunit low > 75
Caulobacter crescentus NA1000 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.52 CCNA_02185 acetolactate synthase large subunit 0.92 27
Alteromonas macleodii MIT1002 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.65 MIT1002_00503 Acetolactate synthase isozyme 3 large subunit 0.98 12
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.52 CCNA_02185 acetolactate synthase large subunit low > 67
Pantoea sp. MT58 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.67 IAI47_15990 acetolactate synthase 3 large subunit low > 76
Erwinia tracheiphila SCR3 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.68 LU632_RS02885 ilvI acetolactate synthase 3 large subunit low > 74
Lysobacter sp. OAE881 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.37 ABIE51_RS17550 acetolactate synthase 2 catalytic subunit 0.96 33
Mucilaginibacter yixingensis YX-36 DSM 26809 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.36 ABZR88_RS11580 biosynthetic-type acetolactate synthase large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase 0.37 CA265_RS15805 acetolactate synthase, large subunit, biosynthetic type 0.94 10
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_2062 3-isopropylmalate dehydrogenase 0.36 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type
Rhodanobacter denitrificans MT42 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.32 LRK55_RS09950 biosynthetic-type acetolactate synthase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.32 LRK54_RS10310 biosynthetic-type acetolactate synthase large subunit 0.95 4
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.37 HMPREF1078_RS16690 biosynthetic-type acetolactate synthase large subunit 0.94 26
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.31 OKGIIK_13610 ilvB biosynthetic-type acetolactate synthase large subunit low > 52
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.37 HMPREF1181_RS08330 biosynthetic-type acetolactate synthase large subunit 0.93 5
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase 0.35 A4249_RS10020 acetolactate synthase 2 catalytic subunit 0.99 28
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.37 CA264_06930 acetolactate synthase, large subunit, biosynthetic type low > 74
Bacteroides thetaiotaomicron VPI-5482 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.37 BT2077 acetolactate synthase large subunit (NCBI ptt file) 0.90 8
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.36 HMPREF1058_RS16820 biosynthetic-type acetolactate synthase large subunit low > 67
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.36 ABI39_RS12720 biosynthetic-type acetolactate synthase large subunit 0.90 4
Bacteroides ovatus ATCC 8483 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.36 BACOVA_03303 acetolactate synthase, large subunit, biosynthetic type 0.98 5
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.34 ABZR86_RS15935 biosynthetic-type acetolactate synthase large subunit 0.95 15
Methanococcus maripaludis JJ 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase 0.39 MMJJ_RS01650 acetolactate synthase large subunit
Methanococcus maripaludis S2 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase 0.39 MMP_RS03415 acetolactate synthase large subunit
Mycobacterium tuberculosis H37Rv 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) 0.44 Rv3003c Acetolactate synthase (large subunit) IlvB1 (acetohydroxy-acid synthase)
Bifidobacterium breve UCC2003 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase 0.38 BBR_RS12350 acetolactate synthase large subunit low > 34

Not shown: 1 genomes with orthologs for PP_1988 only; 0 genomes with orthologs for PP_4680 only