Conservation of cofitness between PP_4724 and PP_1988 in Pseudomonas putida KT2440

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4724 Carbamoyl-phosphate synthase small chain 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.53 16
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_05635 carbamoyl phosphate synthase small subunit 0.92 AO353_20635 3-isopropylmalate dehydrogenase
Pseudomonas simiae WCS417 0.93 PS417_24045 carbamoyl phosphate synthase small subunit 0.93 PS417_18585 3-isopropylmalate dehydrogenase
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07485 carbamoyl phosphate synthase small subunit 0.94 AO356_21415 3-isopropylmalate dehydrogenase
Pseudomonas sp. RS175 0.92 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.93 PFR28_02821 3-isopropylmalate dehydrogenase
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pseudomonas fluorescens SBW25 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase
Pseudomonas sp. S08-1 0.88 OH686_17075 Carbamoyl-phosphate synthase small chain 0.87 OH686_04470 3-isopropylmalate dehydrogenase
Pseudomonas stutzeri RCH2 0.87 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.87 Psest_2589 3-isopropylmalate dehydrogenase
Marinobacter adhaerens HP15 0.75 HP15_3078 carbamoyl-phosphate synthase small chain 0.73 HP15_1832 3-isopropylmalate dehydrogenase 0.36 23
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.53 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Shewanella amazonensis SB2B 0.74 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.74 61
Rahnella sp. WP5 0.72 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.97 4
Shewanella oneidensis MR-1 0.72 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.89 30
Pectobacterium carotovorum WPP14 0.72 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.95 22
Klebsiella michiganensis M5al 0.72 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.50 54
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BW25113 0.71 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.84 52
Escherichia fergusonii Becca 0.71 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli BL21 0.71 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia coli ECRC99 0.71 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase
Enterobacter sp. TBS_079 0.71 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.76 61
Escherichia coli ECRC101 0.71 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC101 0.71 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC102 0.71 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase
Alteromonas macleodii MIT1002 0.71 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.95 40
Dickeya dianthicola ME23 0.71 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.71 34
Escherichia coli ECOR27 0.71 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC62 0.71 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase
Dickeya dadantii 3937 0.71 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.75 51
Escherichia coli ECRC98 0.71 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECOR38 0.71 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Dickeya dianthicola 67-19 0.71 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.77 18
Shewanella loihica PV-4 0.71 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.90 19
Lysobacter sp. OAE881 0.70 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Shewanella sp. ANA-3 0.70 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.90 50
Serratia liquefaciens MT49 0.70 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.68 48
Acinetobacter radioresistens SK82 0.70 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pantoea sp. MT58 0.69 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.87 28
Dechlorosoma suillum PS 0.69 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.68 Dsui_3198 3-isopropylmalate dehydrogenase
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase
Ralstonia solanacearum PSI07 0.69 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase
Ralstonia solanacearum UW163 0.68 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase
Erwinia tracheiphila SCR3 0.68 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.63 49
Ralstonia solanacearum GMI1000 0.68 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.64 RS_RS09990 3-isopropylmalate dehydrogenase
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.62 30
Rhodanobacter denitrificans MT42 0.66 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase
Acidovorax sp. GW101-3H11 0.66 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Variovorax sp. OAS795 0.66 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Paraburkholderia graminis OAS925 0.66 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase
Variovorax sp. SCN45 0.66 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Castellaniella sp019104865 MT123 0.62 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase
Phaeobacter inhibens DSM 17395 0.52 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.72 17
Azospirillum sp. SherDot2 0.52 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase
Rhodospirillum rubrum S1H 0.50 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.87 16
Magnetospirillum magneticum AMB-1 0.50 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase
Rhodopseudomonas palustris CGA009 0.50 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 TX73_001175 3-isopropylmalate dehydrogenase
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase
Dinoroseobacter shibae DFL-12 0.49 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq)
Sinorhizobium meliloti 1021 0.48 SMc01569 carbamoyl phosphate synthase small subunit 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.65 37
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase
Rhizobium sp. OAE497 0.47 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase
Agrobacterium fabrum C58 0.47 Atu2170 carbamoylphosphate synthase small chain 0.57 Atu2791 3-isopropylmalate dehydrogenase
Caulobacter crescentus NA1000 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.51 CCNA_00193 3-isopropylmalate dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.51 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.46 Echvi_2062 3-isopropylmalate dehydrogenase
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.67 36
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR)
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_19490 carbamoyl phosphate synthase small subunit 0.43 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Mycobacterium tuberculosis H37Rv 0.38 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase
Methanococcus maripaludis S2 0.36 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.33 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase low > 94
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase low > 61
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase low > 72
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase low > 56

Not shown: 1 genomes with orthologs for PP_4724 only; 0 genomes with orthologs for PP_1988 only