Conservation of cofitness between PP_1985 and PP_1988 in Pseudomonas putida KT2440

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1985 3-isopropylmalate dehydratase large subunit 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.94 1
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.93 2
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.99 1
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.89 1
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_20620 isopropylmalate isomerase 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.98 1
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_21400 isopropylmalate isomerase 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas sp. RS175 0.89 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.89 1
Pseudomonas simiae WCS417 0.89 PS417_18600 isopropylmalate isomerase 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.94 1
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas fluorescens SBW25 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.92 1
Pseudomonas stutzeri RCH2 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.95 1
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.96 1
Pseudomonas sp. S08-1 0.86 OH686_04480 3-isopropylmalate dehydratase large subunit 0.87 OH686_04470 3-isopropylmalate dehydrogenase 0.89 7
Xanthomonas campestris pv. campestris strain 8004 0.84 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 3
Marinobacter adhaerens HP15 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.73 HP15_1832 3-isopropylmalate dehydrogenase 0.97 1
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 1
Acinetobacter radioresistens SK82 0.72 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 1.00 1
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.93 1
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS14400 isopropylmalate isomerase 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.96 1
Castellaniella sp019104865 MT123 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.74 1
Ralstonia solanacearum PSI07 0.72 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.80 5
Ralstonia solanacearum GMI1000 0.72 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.42 16
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.66 7
Ralstonia solanacearum UW163 0.71 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.93 2
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.88 1
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS33915 isopropylmalate isomerase 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.97 1
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS16515 isopropylmalate isomerase 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.96 4
Paraburkholderia graminis OAS925 0.71 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.97 1
Variovorax sp. OAS795 0.69 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase
Variovorax sp. SCN45 0.68 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.71 16
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 1
Acidovorax sp. GW101-3H11 0.67 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.98 1
Azospirillum brasilense Sp245 0.66 AZOBR_RS03545 isopropylmalate isomerase 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.89 12
Azospirillum sp. SherDot2 0.66 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase 0.93 1
Rhodospirillum rubrum S1H 0.66 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.95 8
Dechlorosoma suillum PS 0.66 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.68 Dsui_3198 3-isopropylmalate dehydrogenase
Sinorhizobium meliloti 1021 0.65 SMc03823 isopropylmalate isomerase large subunit 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.99 2
Agrobacterium fabrum C58 0.64 Atu2709 3-isopropylmalate dehydratase, large subunit 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.99 2
Rhizobium sp. OAE497 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.99 3
Bosea sp. OAE506 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase
Magnetospirillum magneticum AMB-1 0.63 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase
Rhodopseudomonas palustris CGA009 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit 0.53 TX73_001175 3-isopropylmalate dehydrogenase
Rahnella sp. WP5 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.99 1
Pectobacterium carotovorum WPP14 0.61 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.98 9
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.51 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 1.00 1
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.97 1
Pantoea sp. MT58 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.98 4
Escherichia coli ECRC62 0.61 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase
Enterobacter sp. TBS_079 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.98 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli ECRC101 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC102 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase
Escherichia coli Nissle 1917 0.61 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia coli ECOR38 0.61 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli BW25113 0.61 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.99 1
Escherichia coli BL21 0.61 ECD_00074 3-isopropylmalate dehydratase large subunit 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.78 8
Escherichia coli ECOR27 0.61 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC98 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC101 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC99 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase
Klebsiella michiganensis M5al 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.95 5
Dickeya dadantii 3937 0.60 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.97 1
Dickeya dianthicola 67-19 0.60 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.89 2
Escherichia fergusonii Becca 0.60 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Rhodanobacter denitrificans MT42 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Dickeya dianthicola ME23 0.60 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.98 1
Shewanella loihica PV-4 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.99 1
Shewanella oneidensis MR-1 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.99 1
Phaeobacter inhibens DSM 17395 0.59 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.98 1
Shewanella sp. ANA-3 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.98 3
Serratia liquefaciens MT49 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.81 6
Dinoroseobacter shibae DFL-12 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq)
Shewanella amazonensis SB2B 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.99 1
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.97 32
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.53 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Alteromonas macleodii MIT1002 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.99 1
Mycobacterium tuberculosis H37Rv 0.56 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Erwinia tracheiphila SCR3 0.56 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.97 1
Bifidobacterium breve UCC2003 0.54 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase 0.94 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_09435 3-isopropylmalate dehydratase large subunit 0.43 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase 0.96 1
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.98 1
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.98 1
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.93 2
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.96 1
Bacteroides thetaiotaomicron VPI-5482 0.49 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.94 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.46 Echvi_2062 3-isopropylmalate dehydrogenase
Bacteroides ovatus ATCC 8483 0.49 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.99 2
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.98 1
Lysobacter sp. OAE881 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.95 7
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase 0.99 10
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase
Methanococcus maripaludis JJ 0.22 MMJJ_RS06750 homoaconitase large subunit 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase
Methanococcus maripaludis S2 0.22 MMP_RS07610 homoaconitase large subunit 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.97 4
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.99 1

Not shown: 0 genomes with orthologs for PP_1985 only; 0 genomes with orthologs for PP_1988 only