Conservation of cofitness between PGA1_c29780 and PGA1_c29490 in Phaeobacter inhibens DSM 17395

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c29780 3-isopropylmalate dehydratase large subunit 1.0 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.93 5
Dinoroseobacter shibae DFL-12 0.85 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.32 Dshi_0129 dihydroxy-acid dehydratase (RefSeq)
Azospirillum sp. SherDot2 0.75 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.72 MPMX19_05356 Dihydroxy-acid dehydratase
Azospirillum brasilense Sp245 0.73 AZOBR_RS03545 isopropylmalate isomerase 0.73 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Sinorhizobium meliloti 1021 0.73 SMc03823 isopropylmalate isomerase large subunit 0.77 SMc04045 dihydroxy-acid dehydratase 0.97 8
Bosea sp. OAE506 0.72 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase
Agrobacterium fabrum C58 0.72 Atu2709 3-isopropylmalate dehydratase, large subunit 0.76 Atu1918 dihydroxy-acid dehydratase
Magnetospirillum magneticum AMB-1 0.71 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.74 AMB_RS12770 dihydroxy-acid dehydratase
Rhizobium sp. OAE497 0.71 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.76 ABIE40_RS08005 dihydroxy-acid dehydratase 0.87 67
Rhodospirillum rubrum S1H 0.70 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.96 3
Rhodopseudomonas palustris CGA009 0.69 TX73_001245 3-isopropylmalate dehydratase large subunit 0.76 TX73_007515 dihydroxy-acid dehydratase
Caulobacter crescentus NA1000 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.96 13
Caulobacter crescentus NA1000 Δfur 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Escherichia fergusonii Becca 0.64 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.71 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Sphingomonas koreensis DSMZ 15582 0.64 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.99 5
Escherichia coli ECRC62 0.64 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 BNILDI_04750 ilvD dihydroxy-acid dehydratase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.71 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli BL21 0.64 ECD_00074 3-isopropylmalate dehydratase large subunit 0.71 ECD_03649 dihydroxyacid dehydratase 0.82 5
Escherichia coli Nissle 1917 0.64 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.71 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli ECOR27 0.64 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli BW25113 0.64 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.71 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.98 4
Escherichia coli ECOR38 0.64 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC101 0.64 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 MCAODC_05145 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC99 0.64 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 KEDOAH_13510 ilvD dihydroxy-acid dehydratase
Marinobacter adhaerens HP15 0.64 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.68 HP15_595 dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC98 0.64 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 JDDGAC_18260 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC102 0.64 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 NIAGMN_12395 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC101 0.64 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.71 OKFHMN_14640 ilvD dihydroxy-acid dehydratase
Pseudomonas sp. S08-1 0.64 OH686_04480 3-isopropylmalate dehydratase large subunit 0.74 OH686_14100 dihydroxy-acid dehydratase 0.94 1
Dickeya dianthicola ME23 0.64 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.69 DZA65_RS21335 dihydroxy-acid dehydratase 0.89 5
Klebsiella michiganensis M5al 0.64 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.71 BWI76_RS00975 dihydroxy-acid dehydratase 0.92 13
Dickeya dianthicola 67-19 0.64 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.70 HGI48_RS20295 dihydroxy-acid dehydratase 0.76 28
Dickeya dadantii 3937 0.64 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.70 DDA3937_RS20155 dihydroxy-acid dehydratase 0.66 54
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21400 isopropylmalate isomerase 0.74 AO356_13250 dihydroxy-acid dehydratase 0.94 10
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14400 isopropylmalate isomerase 0.30 RR42_RS16210 dihydroxy-acid dehydratase
Rahnella sp. WP5 0.64 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.66 EX31_RS15005 dihydroxy-acid dehydratase 0.99 7
Enterobacter asburiae PDN3 0.64 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.71 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.96 4
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.87 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.73 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Pseudomonas sp. RS175 0.63 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.75 PFR28_04278 Dihydroxy-acid dehydratase 0.76 4
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.89 27
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.91 6
Enterobacter sp. TBS_079 0.63 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.71 MPMX20_04499 Dihydroxy-acid dehydratase 0.94 11
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_20620 isopropylmalate isomerase 0.75 AO353_08345 dihydroxy-acid dehydratase 0.96 6
Pectobacterium carotovorum WPP14 0.63 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.71 HER17_RS01075 dihydroxy-acid dehydratase 0.97 12
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase
Paraburkholderia graminis OAS925 0.63 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.72 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Pantoea sp. MT58 0.63 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.71 IAI47_01035 dihydroxy-acid dehydratase 0.99 3
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.73 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.80 34
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.72 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.74 Psyr_0469 dihydroxyacid dehydratase 0.93 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.74 Psyr_0469 dihydroxyacid dehydratase 0.94 4
Castellaniella sp019104865 MT123 0.62 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.69 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Serratia liquefaciens MT49 0.62 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.69 IAI46_24345 dihydroxy-acid dehydratase 0.77 10
Pseudomonas simiae WCS417 0.62 PS417_18600 isopropylmalate isomerase 0.74 PS417_26890 dihydroxy-acid dehydratase 0.90 8
Pseudomonas stutzeri RCH2 0.62 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.74 Psest_0234 dihydroxy-acid dehydratase
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.30 RALBFv3_RS04535 dihydroxy-acid dehydratase
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.73 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS16515 isopropylmalate isomerase 0.70 HSERO_RS02650 dihydroxy-acid dehydratase 0.96 5
Pseudomonas putida KT2440 0.62 PP_1985 3-isopropylmalate dehydratase large subunit 0.74 PP_5128 Dihydroxy-acid dehydratase 0.90 5
Ralstonia solanacearum UW163 0.62 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.30 UW163_RS09135 dihydroxy-acid dehydratase
Pseudomonas fluorescens SBW25 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.75 PFLU_RS28535 dihydroxy-acid dehydratase 0.78 11
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS33915 isopropylmalate isomerase 0.70 BPHYT_RS10100 dihydroxy-acid dehydratase 0.83 39
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.75 PFLU_RS28535 dihydroxy-acid dehydratase 0.88 7
Ralstonia solanacearum GMI1000 0.62 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.30 RS_RS12105 dihydroxy-acid dehydratase
Acinetobacter radioresistens SK82 0.62 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.30 MPMX26_03019 Dihydroxy-acid dehydratase 0.93 15
Variovorax sp. OAS795 0.62 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.31 ABID97_RS17500 dihydroxy-acid dehydratase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.61 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Variovorax sp. SCN45 0.61 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Mycobacterium tuberculosis H37Rv 0.61 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.33 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad)
Dechlorosoma suillum PS 0.60 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.72 Dsui_1122 dihydroxy-acid dehydratase
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.73 CSW01_00140 dihydroxy-acid dehydratase low > 62
Erwinia tracheiphila SCR3 0.59 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.68 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.87 6
Alteromonas macleodii MIT1002 0.59 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.71 MIT1002_04041 Dihydroxy-acid dehydratase 0.99 2
Shewanella loihica PV-4 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.69 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.99 3
Acidovorax sp. GW101-3H11 0.59 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.73 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.74 47
Shewanella sp. ANA-3 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.69 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.96 8
Shewanella oneidensis MR-1 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.68 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.98 4
Shewanella amazonensis SB2B 0.58 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.69 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.97 10
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Rhodanobacter denitrificans MT42 0.56 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Bifidobacterium breve UCC2003 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.55 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.27 Echvi_2055 dihydroxy-acid dehydratase 0.77 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.28 ABZR88_RS11575 dihydroxy-acid dehydratase
Phocaeicola dorei CL03T12C01 0.53 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.61 ABI39_RS12715 dihydroxy-acid dehydratase 0.92 3
Phocaeicola vulgatus CL09T03C04 0.53 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.61 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.61 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.95 5
Pedobacter sp. GW460-11-11-14-LB5 0.53 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.94 8
Bacteroides ovatus ATCC 8483 0.53 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.59 BACOVA_03302 dihydroxy-acid dehydratase 0.98 4
Bacteroides thetaiotaomicron VPI-5482 0.52 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.60 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.89 17
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_09435 3-isopropylmalate dehydratase large subunit 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.52 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.25 A4249_RS10030 dihydroxy-acid dehydratase 1.00 7
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.62 HMPREF1078_RS16695 dihydroxy-acid dehydratase 0.93 46
Lysobacter sp. OAE881 0.50 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.94 16
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.94 37
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.28 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.66 4
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase
Methanococcus maripaludis S2 0.24 MMP_RS05930 3-isopropylmalate dehydratase large subunit 0.33 MMP_RS01700 dihydroxy-acid dehydratase 0.63 23
Methanococcus maripaludis JJ 0.24 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit 0.34 MMJJ_RS03675 dihydroxy-acid dehydratase
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.88 28
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.95 5

Not shown: 1 genomes with orthologs for PGA1_c29780 only; 0 genomes with orthologs for PGA1_c29490 only