Conservation of cofitness between PS417_25395 and PS417_05815 in Pseudomonas simiae WCS417

115 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_05815 recombinase RecA 0.41 13
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 1.00 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 1.00 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 1.00 GEMAOFIL_01333 Protein RecA low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.93 Pf1N1B4_3143 RecA protein 0.46 10
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.92 PfGW456L13_4668 RecA protein 0.29 49
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.94 AO353_16805 recombinase RecA 0.28 95
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.93 AO356_05670 recombinase RecA 0.32 37
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.93 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.93 PFR28_00472 Protein RecA low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.92 GFF2111 Protein RecA low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.94 Psyr_1378 RecA protein 0.54 13
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.94 Psyr_1378 RecA protein 0.36 12
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.91 COO64_RS19930 recA recombinase RecA 0.43 14
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.87 JOY50_RS23780 recA recombinase RecA low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.87 PP_1629 Protein RecA — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.85 OH686_18205 protein RecA low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.87 IKLFDK_18465 recombinase RecA low > 100
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.87 Psest_2872 protein RecA 0.35 15
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.71 MCAODC_11230 recA recombinase RecA low > 88
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.71 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.71 JDDGAC_24370 recA recombinase RecA — —
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.71 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.71 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.71 HEPCGN_19900 recA recombinase RecA low > 88
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.71 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.71 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.71 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.71 BNILDI_11105 recA recombinase RecA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.71 OHPLBJKB_01035 Protein RecA low > 74
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.71 NOLOHH_12545 recA recombinase RecA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.71 GFF4693 RecA protein — —
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.71 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 61
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.71 DDA3937_RS16245 recombinase RecA low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.71 KDGMDA_02850 recombinase RecA low > 95
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.74 EX31_RS07800 recombinase RecA low > 89
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.71 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.72 DZA65_RS17450 recombinase RecA — —
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.80 HP15_1048 recombinase A low > 73
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.70 MPMX20_03580 Protein RecA low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.71 BWI76_RS22180 recombinase RecA — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.73 B158DRAFT_1531 protein RecA 0.58 17
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.73 HER17_RS05045 recombinase RecA low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.71 EX28DRAFT_2785 protein RecA — —
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.73 MIT1002_00955 Recombinase A low > 70
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.70 PagCFBP13505_RS16670 recombinase RecA low > 74
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.71 IAI46_03840 recombinase RecA 0.60 3
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.73 CSW01_02875 DNA recombination/repair protein RecA low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.70 IAI47_04300 recombinase RecA low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.71 SO3430 recA recA protein (NCBI ptt file) 0.30 44
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.71 OLJFJH_09575 recombinase RecA low > 58
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.72 Sama_1046 recA recombinase A (RefSeq) 0.30 62
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.70 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.72 LU632_RS15735 recA recombinase RecA — —
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.72 IJEDHG_01625 recA recombinase RecA — —
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.69 Shew_1215 recA recombinase A (RefSeq) low > 60
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.68 Dsui_0707 protein RecA 0.88 8
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.72 ABZR86_RS00660 recombinase RecA 0.71 24
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.68 Xcc-8004.3111.1 RecA protein — —
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.70 GFF841 Protein RecA low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.74 LRK53_RS13640 recombinase RecA — —
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.75 LRK54_RS14980 recombinase RecA 0.45 25
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.75 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.75 OKGIIK_03740 recA recombinase RecA low > 52
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.64 ABZR87_RS07965 recombinase RecA low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.64 HSERO_RS03270 protein RecA 0.43 34
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.65 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.65 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.65 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.65 RALBFv3_RS12010 recombinase RecA low > 76
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.73 RR41_RS08110 recombinase RecA — —
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.65 RR42_RS03080 recombinase RecA 0.46 12
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.67 QEN71_RS02335 recombinase RecA — —
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.68 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.68 H281DRAFT_04208 RecA protein low > 103
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.73 MPMX26_01308 Protein RecA low > 36
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.68 ABIE53_003448 recombination protein RecA 0.38 54
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.63 GFF5390 RecA protein low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.64 GFF2500 RecA protein low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.63 ABID97_RS02275 recombinase RecA low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.64 Ac3H11_1255 RecA protein — —
Xanthobacter sp. DMC5 0.62 GFF749 UvrABC system protein A 0.66 GFF1169 Protein RecA — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.69 ABCV34_RS04460 recombinase RecA low > 48
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.67 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS08575 excinuclease ABC subunit UvrA 0.65 A4249_RS12615 recombinase RecA low > 48
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.68 TX73_019940 recombinase RecA — —
Sphingobium sp. HT1-2 0.61 GFF1696 Excinuclease ABC subunit A 0.69 GFF3120 RecA protein low > 95
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.62 Dshi_1643 recA protein (RefSeq) 0.61 15
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.68 MPMX19_00869 Protein RecA — —
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.64 CCNA_01141 RecA protein 0.71 12
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.64 CCNA_01141 RecA protein — —
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.68 Ga0059261_0204 protein RecA 0.61 9
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.66 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.67 AZOBR_RS11095 recombinase RecA 0.47 39
Agrobacterium fabrum C58 0.60 Atu1513 ABC excinuclease subunit A 0.67 Atu1874 RecA protein 0.51 10
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.67 ABIE40_RS10320 recombinase RecA low > 107
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.67 SMc00760 recombinase A 0.52 19
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.64 ABIE41_RS13335 recombinase RecA 0.54 12
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.66 PGA1_c15260 protein recA (recombinase A) 0.58 9
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.62 BBR_RS16530 recombinase RecA 0.51 13
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.52 HUW76_07355 recombinase RecA low > 35
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.60 Synpcc7942_0348 recA recombinase A — —
Synechocystis sp000284455 PCC 6803 0.53 SGL_RS06380 excinuclease ABC subunit UvrA 0.60 SGL_RS18280 recombinase RecA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.56 Echvi_0044 protein RecA 0.48 23
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.57 BACOVA_05402 RecA protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.56 BT4610 RecA (NCBI ptt file) 0.55 25
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.58 ABI39_RS11930 recombinase RecA low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.61 CA264_19695 DNA recombination/repair protein RecA — —
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.58 HMPREF1058_RS15965 recombinase RecA low > 67
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.56 HMPREF1078_RS00095 recombinase RecA low > 61
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.60 M666_RS05260 recombinase RecA low > 67
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.57 HMPREF1181_RS11910 recombinase RecA low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.58 CA265_RS00600 recombinase RecA 0.70 12
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.58 ABZR88_RS16740 recombinase RecA low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.59 DVU1090 recA recA protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.58 DvMF_0876 recA recombinase A (RefSeq) 0.48 5

Not shown: 3 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_05815 only