Conservation of cofitness between DZA65_RS19385 and DZA65_RS06420 in Dickeya dianthicola ME23

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS06420 phosphoribosylformylglycinamidine cyclo-ligase 0.85 9
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.00 HGI48_RS06070 phosphoribosylformylglycinamidine cyclo-ligase 0.87 3
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.99 DDA3937_RS06025 phosphoribosylformylglycinamidine cyclo-ligase 0.85 17
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.92 HER17_RS15465 phosphoribosylformylglycinamidine cyclo-ligase 0.96 12
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.87 EX31_RS22695 phosphoribosylformylglycinamidine cyclo-ligase 0.89 63
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.87 BWI76_RS20965 phosphoribosylformylglycinamidine cyclo-ligase 0.57 14
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.86 EX28DRAFT_0168 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.86 OHPLBJKB_01227 Phosphoribosylformylglycinamidine cyclo-ligase 0.48 13
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.87 IAI46_18885 phosphoribosylformylglycinamidine cyclo-ligase low > 86
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.86 b2499 purM phosphoribosylaminoimidazole synthetase (NCBI) 0.84 46
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.86 ECD_02391 phosphoribosylaminoimidazole synthetase 0.82 9
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.86 NIAGMN_19580 purM Phosphoribosylformylglycinamidine cyclo-ligase
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.86 HEPCGN_20975 purM Phosphoribosylformylglycinamidine cyclo-ligase 0.81 76
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.86 NOLOHH_13460 purM Phosphoribosylformylglycinamidine cyclo-ligase 0.86 29
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.86 JDDGAC_25755 purM Phosphoribosylformylglycinamidine cyclo-ligase low > 86
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.86 OKFHMN_21810 purM Phosphoribosylformylglycinamidine cyclo-ligase low > 80
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.86 BNILDI_12270 purM Phosphoribosylformylglycinamidine cyclo-ligase 0.93 14
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.86 KEDOAH_06410 purM Phosphoribosylformylglycinamidine cyclo-ligase
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.86 MCAODC_12340 purM Phosphoribosylformylglycinamidine cyclo-ligase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.86 GFF2169 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) low > 78
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.86 ECOLIN_RS14190 phosphoribosylformylglycinamidine cyclo-ligase 0.68 50
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.86 EFB2_01399 Phosphoribosylformylglycinamidine cyclo-ligase low > 86
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.86 MPMX20_03354 Phosphoribosylformylglycinamidine cyclo-ligase 0.85 34
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.85 IAI47_05180 phosphoribosylformylglycinamidine cyclo-ligase 0.87 34
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.86 LU632_RS08275 purM phosphoribosylformylglycinamidine cyclo-ligase 0.93 7
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.77 CSW01_11350 phosphoribosylformylglycinamidine cyclo-ligase 0.53 32
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.76 Sama_2097 phosphoribosylaminoimidazole synthetase (RefSeq) 0.80 14
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.74 Shew_1513 phosphoribosylaminoimidazole synthetase (RefSeq)
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.75 SO2760 purM phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) 0.91 13
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.76 Shewana3_2545 phosphoribosylaminoimidazole synthetase (RefSeq) 0.92 26
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.71 B158DRAFT_2385 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.72 MIT1002_02219 Phosphoribosylformylglycinamidine cyclo-ligase 0.96 34
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.70 Psest_1474 phosphoribosylaminoimidazole synthetase
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.69 AO353_02680 phosphoribosylaminoimidazole synthetase
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.70 OH686_18995 Phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.69 PfGW456L13_4252 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.69 Pf6N2E2_5729 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.68 Pf1N1B4_3698 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.69 AO356_19090 phosphoribosylaminoimidazole synthetase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.70 Psyr_3689 phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.69 PP_1665 Phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.70 Psyr_3689 phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.69 PS417_20120 phosphoribosylaminoimidazole synthetase
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.69 PFLU_RS22065 phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.69 PFR28_03217 Phosphoribosylformylglycinamidine cyclo-ligase
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.69 PFLU_RS22065 phosphoribosylformylglycinamidine cyclo-ligase
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.68 HP15_1299 phosphoribosylaminoimidazole synthetase
Dechlorosoma suillum PS 0.68 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.61 Dsui_1519 phosphoribosylaminoimidazole synthetase
Acinetobacter radioresistens SK82 0.68 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.66 MPMX26_02206 Phosphoribosylformylglycinamidine cyclo-ligase low > 36
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.57 HSERO_RS03165 phosphoribosylaminoimidazole synthetase
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.59 RR42_RS17220 phosphoribosylaminoimidazole synthetase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 LRK55_RS12645 phosphoribosylformylglycinamidine cyclo-ligase
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.55 ABIE51_RS15890 phosphoribosylformylglycinamidine cyclo-ligase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.55 Xcc-8004.1676.1 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 LRK54_RS12945 phosphoribosylformylglycinamidine cyclo-ligase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 ABZR87_RS00915 phosphoribosylformylglycinamidine cyclo-ligase
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.54 ABZR86_RS19865 phosphoribosylformylglycinamidine cyclo-ligase
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.56 RPSI07_RS12020 phosphoribosylformylglycinamidine cyclo-ligase
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.54 Ac3H11_1318 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.56 RALBFv3_RS05280 phosphoribosylformylglycinamidine cyclo-ligase
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 QEN71_RS26445 phosphoribosylformylglycinamidine cyclo-ligase
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.56 UW163_RS08345 phosphoribosylformylglycinamidine cyclo-ligase
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.54 OKGIIK_02315 purM phosphoribosylformylglycinamidine cyclo-ligase 0.78 16
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.55 RS_RS13145 phosphoribosylformylglycinamidine cyclo-ligase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.55 GFF3433 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.54 ABID97_RS08700 phosphoribosylformylglycinamidine cyclo-ligase
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.54 GFF3941 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.55 H281DRAFT_04710 phosphoribosylformylglycinamidine cyclo-ligase
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.55 BPHYT_RS03640 phosphoribosylformylglycinamidine cyclo-ligase 0.69 9
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.54 ABIE53_000874 phosphoribosylformylglycinamidine cyclo-ligase
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.60 ABCV34_RS08795 phosphoribosylformylglycinamidine cyclo-ligase
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.55 AZOBR_RS16290 phosphoribosylaminoimidazole synthetase
Azospirillum sp. SherDot2 0.51 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.54 MPMX19_01304 Phosphoribosylformylglycinamidine cyclo-ligase
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.52 AMB_RS14330 phosphoribosylformylglycinamidine cyclo-ligase
Rhodospirillum rubrum S1H 0.48 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.55 Rru_A2167 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.48 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.48 TX73_015785 phosphoribosylformylglycinamidine cyclo-ligase
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.55 PGA1_c13260 phosphoribosylformylglycinamidine cyclo-ligase PurM 0.64 38
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.51 Ga0059261_0228 phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Sinorhizobium meliloti 1021 0.47 SMc01569 carbamoyl phosphate synthase small subunit 0.52 SMc00615 phosphoribosylaminoimidazole synthetase 0.62 55
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.50 A4249_RS08210 phosphoribosylformylglycinamidine cyclo-ligase
Dinoroseobacter shibae DFL-12 0.47 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.50 Dshi_1889 phosphoribosylformylglycinamidine cyclo-ligase (RefSeq)
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.47 ABIE41_RS17040 phosphoribosylformylglycinamidine cyclo-ligase
Rhizobium sp. OAE497 0.45 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 ABIE40_RS06560 phosphoribosylformylglycinamidine cyclo-ligase
Agrobacterium fabrum C58 0.45 Atu2170 carbamoylphosphate synthase small chain 0.54 Atu1141 Phosphoribosylglycinamide synthetase
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.51 CCNA_01775 phosphoribosylformylglycinamidine cyclo-ligase low > 67
Caulobacter crescentus NA1000 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.51 CCNA_01775 phosphoribosylformylglycinamidine cyclo-ligase
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.51 Synpcc7942_0851 purM phosphoribosylaminoimidazole synthetase
Fusobacterium nucleatum SB010 0.40 HUW76_08755 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.47 HUW76_05175 phosphoribosylformylglycinamidine cyclo-ligase low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.09 CA265_RS05175 phosphoribosylformylglycinamidine cyclo-ligase
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_19490 carbamoyl phosphate synthase small subunit 0.08 CA264_17695 phosphoribosylformylglycinamidine cyclo-ligase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.08 ABZR88_RS04080 AIR synthase related protein
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.49 DVU1406 purM phosphoribosylformylglycinamidine cyclo-ligase (TIGR)
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.47 BBR_RS13375 phosphoribosylformylglycinamidine cyclo-ligase low > 34
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 MMJJ_RS07900 phosphoribosylformylglycinamidine cyclo-ligase
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.51 DvMF_0202 phosphoribosylaminoimidazole synthetase (RefSeq)
Methanococcus maripaludis S2 0.37 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 MMP_RS06450 phosphoribosylformylglycinamidine cyclo-ligase
Mycobacterium tuberculosis H37Rv 0.36 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.40 Rv0809 Probable phosphoribosylformylglycinamidine CYCLO-ligase PurM (AIRS) (phosphoribosyl-aminoimidazole synthetase) (air synthase)
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.09 BACOVA_05058 hypothetical protein low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.09 ABI39_RS00475 phosphoribosylformylglycinamidine cyclo-ligase low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.09 HMPREF1058_RS08025 phosphoribosylformylglycinamidine cyclo-ligase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.10 HMPREF1078_RS13965 AIR synthase-related protein low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.09 HMPREF1181_RS06340 phosphoribosylformylglycinamidine cyclo-ligase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.10 BT4211 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) low > 81

Not shown: 1 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS06420 only