Conservation of cofitness between CSW01_04375 and CSW01_12250 in Vibrio cholerae E7946 ATCC 55056

117 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04375 SsrA-binding protein 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 0.52 12
Escherichia fergusonii Becca 0.72 EFB2_01273 SsrA-binding protein 0.67 EFB2_01007 Tyrosine recombinase XerD low > 86
Escherichia coli ECRC98 0.72 JDDGAC_24790 smpB SsrA-binding protein SmpB 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_01087 SsrA-binding protein 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD low > 74
Escherichia coli Nissle 1917 0.72 ECOLIN_RS14795 SsrA-binding protein SmpB 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.72 MCAODC_11650 smpB SsrA-binding protein SmpB 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.72 NIAGMN_18895 smpB SsrA-binding protein SmpB 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BL21 0.72 ECD_02508 tmRNA-binding trans-translation protein 0.67 ECD_02726 site-specific tyrosine recombinase low > 61
Escherichia coli ECRC99 0.72 KEDOAH_07095 smpB SsrA-binding protein SmpB 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.72 BNILDI_11600 smpB SsrA-binding protein SmpB 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD low > 75
Escherichia coli ECRC100 0.72 OKFHMN_21125 smpB SsrA-binding protein SmpB 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BW25113 0.72 b2620 smpB SsrA-binding protein (NCBI) 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_12795 smpB SsrA-binding protein SmpB 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.72 HEPCGN_20245 smpB SsrA-binding protein SmpB 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4158 tmRNA-binding protein SmpB 0.67 GFF2991 Tyrosine recombinase XerD low > 78
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2723 SsrA-binding protein 0.68 EX28DRAFT_2945 tyrosine recombinase XerD 0.42 70
Enterobacter sp. TBS_079 0.70 MPMX20_03490 SsrA-binding protein 0.68 MPMX20_03753 Tyrosine recombinase XerD low > 85
Klebsiella pneumoniae MKP103 0.70 KDGMDA_02270 SsrA-binding protein SmpB 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD low > 95
Dickeya dadantii 3937 0.70 DDA3937_RS04305 SsrA-binding protein SmpB 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.70 HGI48_RS04300 SsrA-binding protein SmpB 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS04215 SsrA-binding protein SmpB 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Klebsiella michiganensis M5al 0.69 BWI76_RS21580 SsrA-binding protein 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS14680 SsrA-binding protein SmpB 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD — —
Pantoea sp. MT58 0.68 IAI47_04790 SsrA-binding protein SmpB 0.69 IAI47_03820 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_26965 smpB SsrA-binding protein SmpB 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD — —
Rahnella sp. WP5 0.68 EX31_RS21740 SsrA-binding protein SmpB 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.68 LU632_RS17025 smpB SsrA-binding protein SmpB 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS17440 SsrA-binding protein SmpB 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD low > 75
Erwinia amylovora T8 0.67 OLJFJH_10155 SsrA-binding protein SmpB 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD — —
Serratia liquefaciens MT49 0.63 IAI46_19655 SsrA-binding protein SmpB 0.69 IAI46_20730 site-specific tyrosine recombinase XerD low > 87
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0969 SsrA-binding protein 0.51 B158DRAFT_2265 tyrosine recombinase XerD low > 40
Alteromonas macleodii MIT1002 0.59 MIT1002_01806 Small protein B 0.55 MIT1002_00786 Tyrosine recombinase XerD — —
Shewanella sp. ANA-3 0.57 Shewana3_2952 smpB SsrA-binding protein (RefSeq) 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) — —
Shewanella oneidensis MR-1 0.57 SO1473 smpB SsrA-binding protein (NCBI ptt file) 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.55 Sama_2388 smpB SsrA-binding protein (RefSeq) 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) — —
Shewanella loihica PV-4 0.55 Shew_1268 smpB SsrA-binding protein (RefSeq) 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) — —
Marinobacter adhaerens HP15 0.55 HP15_3090 SsrA-binding protein 0.53 HP15_762 site-specific tyrosine recombinase XerD — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3437.1 tmRNA-binding protein SmpB 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD — —
Acinetobacter baumannii LAC-4 0.54 RR41_RS15055 SsrA-binding protein SmpB 0.44 RR41_RS17765 site-specific tyrosine recombinase XerD — —
Lysobacter sp. OAE881 0.53 ABIE51_RS11680 SsrA-binding protein SmpB 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD low > 62
Pseudomonas sp. S08-1 0.53 OH686_17025 SsrA-binding protein 0.56 OH686_17750 tyrosine recombinase XerD low > 80
Pseudomonas sp. SVBP6 0.52 COO64_RS15300 smpB SsrA-binding protein SmpB 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD low > 93
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS05700 SsrA-binding protein SmpB 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD low > 74
Pseudomonas stutzeri RCH2 0.52 Psest_0957 SsrA-binding protein 0.54 Psest_3129 tyrosine recombinase XerD — —
Pseudomonas sp. BP01 0.52 JOY50_RS26715 smpB SsrA-binding protein SmpB 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD low > 84
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05690 SsrA-binding protein 0.58 AO353_04365 recombinase XerD low > 101
Pseudomonas segetis P6 0.51 MPMX49_01175 SsrA-binding protein 0.55 MPMX49_01575 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07540 SsrA-binding protein 0.58 AO356_06385 recombinase XerD low > 104
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3378 tmRNA-binding protein SmpB 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas aeruginosa MRSN321 0.51 DY961_RS09600 smpB;go_function=RNA SsrA-binding protein SmpB 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 100
Pseudomonas aeruginosa PA14 0.51 IKLFDK_29750 SsrA-binding protein SmpB 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD — —
Pseudomonas aeruginosa PUPa3 0.51 DQ20_RS52440 smpB;go_function=RNA SsrA-binding protein SmpB 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 101
Dechlorosoma suillum PS 0.51 Dsui_2675 SsrA-binding protein 0.49 Dsui_1217 tyrosine recombinase XerD — —
Pseudomonas putida KT2440 0.51 PP_4733 SsrA-binding protein 0.58 PP_1468 Tyrosine recombinase XerD — —
Pseudomonas sp. RS175 0.50 PFR28_00065 SsrA-binding protein 0.58 PFR28_00331 Tyrosine recombinase XerD — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_07375 smpB SsrA-binding protein SmpB 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD low > 53
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS11435 SsrA-binding protein SmpB 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS17925 SsrA-binding protein SmpB 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS17780 SsrA-binding protein SmpB 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum GMI1000 0.49 RS_RS07145 SsrA-binding protein 0.50 RS_RS12755 tyrosine recombinase XerD — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS17000 SsrA-binding protein SmpB 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD — —
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_4203 SsrA-binding protein 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_4203 SsrA-binding protein 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Ralstonia solanacearum UW163 0.49 UW163_RS13820 SsrA-binding protein SmpB 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS00490 SsrA-binding protein SmpB 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1184 tmRNA-binding protein SmpB 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD — —
Pseudomonas sp. DMC3 0.48 GFF4965 SsrA-binding protein 0.58 GFF1987 Tyrosine recombinase XerD low > 89
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS11940 SsrA-binding protein SmpB 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS11775 single-stranded DNA-binding protein 0.48 RR42_RS03345 recombinase XerD — —
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_5112 tmRNA-binding protein SmpB 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.23 39
Methylophilus sp. DMC18 0.48 GFF1142 SsrA-binding protein 0.50 GFF2342 Tyrosine recombinase XerD — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS04010 SsrA-binding protein SmpB 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD — —
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD — —
Pseudomonas simiae WCS417 0.47 PS417_24095 SsrA-binding protein 0.57 PS417_22895 tyrosine recombinase XerD — —
Pseudomonas orientalis W4I3 0.47 QF045_RS26350 SsrA-binding protein SmpB 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD low > 93
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04969 SsrA-binding protein 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS25935 SsrA-binding protein SmpB 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Variovorax sp. OAS795 0.47 ABID97_RS16435 SsrA-binding protein SmpB 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Variovorax sp. SCN45 0.46 GFF213 tmRNA-binding protein SmpB 0.47 GFF2772 Site-specific tyrosine recombinase XerD low > 127
Paraburkholderia graminis OAS925 0.46 ABIE53_002482 SsrA-binding protein 0.50 ABIE53_003361 integrase/recombinase XerD — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00630 SsrA-binding protein 0.50 H281DRAFT_04126 integrase/recombinase XerD — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12040 single-stranded DNA-binding protein 0.51 BPHYT_RS15950 tyrosine recombinase XerD — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2861 tmRNA-binding protein SmpB 0.48 Ac3H11_302 Tyrosine recombinase XerD — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS11000 single-stranded DNA-binding protein 0.48 HSERO_RS04265 tyrosine recombinase XerD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4352 tmRNA-binding protein SmpB 0.46 GFF5461 Tyrosine recombinase XerD — —
Caulobacter crescentus NA1000 0.42 CCNA_01254 SsrA-binding protein 0.31 CCNA_03101 site-specific tyrosine recombinase XerD — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01254 SsrA-binding protein 0.31 CCNA_03101 site-specific tyrosine recombinase XerD — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06520 SsrA-binding protein SmpB 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_0147 SsrA-binding protein (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS05480 SsrA-binding protein SmpB 0.30 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Rhizobium sp. OAE497 0.41 ABIE40_RS06035 SsrA-binding protein SmpB 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD — —
Rhodospirillum rubrum S1H 0.41 Rru_A1864 SmpB protein (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.40 PGA1_c29450 SsrA-binding protein SmpB 0.31 PGA1_c14060 tyrosine recombinase XerD — —
Desulfovibrio vulgaris Hildenborough JW710 0.40 DVU0828 smpB SsrA-binding protein (TIGR) 0.33 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0212 SsrA-binding protein 0.30 Ga0059261_3595 Site-specific recombinase XerD — —
Sphingobium sp. HT1-2 0.40 GFF3116 tmRNA-binding protein SmpB 0.30 GFF2416 Site-specific tyrosine recombinase XerD — —
Sinorhizobium meliloti 1021 0.39 SMc02405 SsrA-binding protein 0.36 SMc00691 site-specific tyrosine recombinase XerD — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2876 smpB SsrA-binding protein (RefSeq) 0.33 DvMF_0359 tyrosine recombinase XerD (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.38 AMB_RS12810 SsrA-binding protein 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS08425 single-stranded DNA-binding protein 0.34 AZOBR_RS03240 recombinase XerD — —
Azospirillum sp. SherDot2 0.38 MPMX19_01218 SsrA-binding protein 0.38 MPMX19_02643 Tyrosine recombinase XerD — —
Agrobacterium fabrum C58 0.37 Atu1025 SSRA-binding protein 0.35 Atu3629 site-specific tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.37 TX73_013930 SsrA-binding protein SmpB 0.36 TX73_002625 site-specific tyrosine recombinase XerD — —
Mycobacterium tuberculosis H37Rv 0.36 Rv3100c Probable SSRA-binding protein SmpB 0.29 Rv2894c Probable integrase/recombinase XerC — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_2086 SsrA-binding protein 0.31 Echvi_1809 tyrosine recombinase XerD — —
Bosea sp. OAE506 0.35 ABIE41_RS19950 SsrA-binding protein SmpB 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD — —
Xanthobacter sp. DMC5 0.34 GFF405 SsrA-binding protein 0.35 GFF3081 Tyrosine recombinase XerD — —
Bifidobacterium breve UCC2003 0.33 BBR_RS13045 SsrA-binding protein 0.33 BBR_RS16755 site-specific tyrosine recombinase XerD — —
Cellulophaga baltica 18 0.31 M666_RS17575 SsrA-binding protein SmpB 0.31 M666_RS11310 site-specific tyrosine recombinase XerD — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_04675 SsrA-binding protein 0.34 CA264_00850 site-specific tyrosine recombinase XerD — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS00810 SsrA-binding protein SmpB 0.32 ABZR88_RS10220 site-specific tyrosine recombinase XerD — —
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS12595 SsrA-binding protein 0.32 ABI39_RS07000 site-specific tyrosine recombinase XerD — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS16680 SsrA-binding protein 0.32 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS04945 SsrA-binding protein 0.33 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD — —
Bacteroides ovatus ATCC 8483 0.26 BACOVA_01261 SsrA-binding protein 0.33 BACOVA_02123 tyrosine recombinase XerD 0.71 32
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS14950 SsrA-binding protein 0.34 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS10920 SsrA-binding protein 0.34 CA265_RS09520 site-specific tyrosine recombinase XerD low > 88
Bacteroides thetaiotaomicron VPI-5482 0.25 BT0179 SsrA-binding protein (NCBI ptt file) 0.33 BT2843 integrase (NCBI ptt file) — —

Not shown: 4 genomes with orthologs for CSW01_04375 only; 2 genomes with orthologs for CSW01_12250 only